Wall clock time and date at job start Sun Mar 29 2020 22:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47178 * 2 1 4 4 C 1.52996 * 109.47486 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47486 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47178 * 179.97438 * 5 4 3 7 7 O 1.42900 * 109.47168 * 179.97438 * 6 5 4 8 8 C 1.42901 * 114.00102 * 179.97438 * 7 6 5 9 9 H 1.09002 * 110.91650 * 333.90283 * 8 7 6 10 10 C 1.55157 * 111.00253 * 210.00265 * 8 7 6 11 11 C 1.54325 * 102.94184 * 206.42518 * 10 8 7 12 12 N 1.47022 * 107.26948 * 22.19107 * 11 10 8 13 13 C 1.36945 * 125.64832 * 181.02381 * 12 11 10 14 14 H 1.07997 * 119.99756 * 180.02562 * 13 12 11 15 15 C 1.38805 * 119.99878 * 0.02562 * 13 12 11 16 16 N 1.31624 * 120.00257 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00277 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00228 * 17 15 13 20 20 H 1.48499 * 109.46981 * 150.00382 * 17 15 13 21 21 C 1.47423 * 108.70390 * 1.29074 * 12 11 10 22 22 H 1.09002 * 109.47138 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46939 * 299.99849 * 1 2 3 24 24 H 1.08995 * 109.47326 * 60.00123 * 1 2 3 25 25 H 1.09003 * 109.46980 * 240.00267 * 2 1 3 26 26 H 1.08995 * 109.47326 * 119.99877 * 2 1 3 27 27 H 1.09004 * 109.47277 * 59.99824 * 3 2 1 28 28 H 1.09004 * 109.47094 * 300.00331 * 3 2 1 29 29 H 1.09004 * 109.47143 * 59.99574 * 4 3 2 30 30 H 1.09004 * 109.47088 * 300.00167 * 4 3 2 31 31 H 1.09003 * 109.46947 * 60.00080 * 5 4 3 32 32 H 1.09004 * 109.47094 * 300.00164 * 5 4 3 33 33 H 1.09003 * 109.46980 * 60.00267 * 6 5 4 34 34 H 1.08995 * 109.47326 * 299.99877 * 6 5 4 35 35 H 1.09000 * 110.72140 * 88.06348 * 10 8 7 36 36 H 1.08998 * 110.72520 * 324.78667 * 10 8 7 37 37 H 1.09002 * 109.88274 * 262.77538 * 11 10 8 38 38 H 1.08996 * 109.88444 * 141.60894 * 11 10 8 39 39 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 40 40 H 1.09000 * 110.37068 * 94.48354 * 21 12 11 41 41 H 1.09005 * 110.36651 * 216.80519 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6099 2.8850 0.0000 7 8 6.0863 4.2323 0.0000 8 6 7.5108 4.3451 0.0006 9 1 7.9708 3.4644 0.4488 10 6 7.9658 5.6396 0.7249 11 6 9.3276 5.9441 0.0657 12 7 9.3412 5.2685 -1.2400 13 6 10.3813 5.2744 -2.1309 14 1 10.2924 4.7453 -3.0682 15 6 11.5497 5.9603 -1.8291 16 7 11.6582 6.6047 -0.6865 17 14 12.9687 5.9676 -3.0440 18 1 13.8656 4.8176 -2.7645 19 1 12.4375 5.8566 -4.4262 20 1 13.7310 7.2346 -2.9069 21 6 8.0473 4.5892 -1.4343 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9330 0.9288 -0.8909 30 1 3.9337 0.9286 0.8891 31 1 3.7170 3.3983 0.8905 32 1 3.7162 3.3994 -0.8895 33 1 5.9733 2.3716 -0.8903 34 1 5.9733 2.3708 0.8897 35 1 8.0859 5.4617 1.7936 36 1 7.2603 6.4507 0.5447 37 1 10.1353 5.5612 0.6896 38 1 9.4407 7.0194 -0.0720 39 1 12.4749 7.0837 -0.4755 40 1 7.3638 5.2277 -1.9940 41 1 8.1909 3.6405 -1.9516 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224670058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:31 Heat of formation + Delta-G solvation = -53.086726 kcal Electronic energy + Delta-G solvation = -17124.838881 eV Core-core repulsion = 14425.430042 eV Total energy + Delta-G solvation = -2699.408839 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.38566 -36.74092 -35.68171 -32.95987 -31.95928 -29.24358 -28.25816 -26.86251 -24.44712 -23.67569 -21.30004 -21.22468 -20.18501 -19.96825 -16.92324 -16.44146 -16.20811 -15.16241 -14.69324 -14.50897 -14.18698 -13.71898 -13.61894 -13.34810 -12.98629 -12.42436 -12.26607 -12.01795 -11.88697 -11.69152 -11.38301 -11.17140 -10.99758 -10.92869 -10.82968 -10.73549 -10.68373 -10.53913 -10.13888 -10.05735 -9.73109 -9.68743 -8.98616 -8.57619 -6.80984 -5.68933 -3.02886 3.41692 3.46279 3.48697 3.89676 4.52163 4.66773 4.66881 4.81295 4.95870 5.15998 5.26481 5.27278 5.45152 5.46569 5.50516 5.55385 5.59025 5.62285 5.65579 5.75076 5.79153 5.81844 5.87290 5.90893 5.96669 6.05429 6.21756 6.22647 6.34177 6.52535 6.58529 6.73335 6.78100 7.57905 7.65015 7.70563 7.85572 8.28088 9.23966 9.84120 10.50280 11.42841 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.057097 B = 0.003334 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.277310 B = 8395.709079 C = 8754.045417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.118 4.118 5 C -0.118 4.118 6 C 0.062 3.938 7 O -0.381 6.381 8 C 0.072 3.928 9 H 0.066 0.934 10 C -0.140 4.140 11 C 0.179 3.821 12 N -0.605 5.605 13 C -0.227 4.227 14 H 0.078 0.922 15 C -0.010 4.010 16 N -0.923 5.923 17 Si 0.914 3.086 18 H -0.289 1.289 19 H -0.281 1.281 20 H -0.290 1.290 21 C 0.120 3.880 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.046 0.954 39 H 0.252 0.748 40 H 0.028 0.972 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.576 -10.583 3.323 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.156 4.156 5 C -0.155 4.155 6 C -0.015 4.015 7 O -0.300 6.300 8 C 0.014 3.986 9 H 0.084 0.916 10 C -0.178 4.178 11 C 0.054 3.946 12 N -0.333 5.333 13 C -0.356 4.356 14 H 0.096 0.904 15 C -0.206 4.206 16 N -0.571 5.571 17 Si 0.744 3.256 18 H -0.216 1.216 19 H -0.207 1.207 20 H -0.216 1.216 21 C -0.007 4.007 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.486 -10.325 3.310 20.575 hybrid contribution 0.997 -0.186 -0.604 1.180 sum -16.490 -10.512 2.706 19.742 Atomic orbital electron populations 1.21781 0.96027 1.01450 1.01809 1.21546 0.95740 0.97085 1.01996 1.21608 0.95241 0.96614 1.02227 1.21524 0.95432 0.96363 1.02234 1.21518 0.94053 0.96794 1.03163 1.22474 0.94489 0.84751 0.99796 1.87859 1.21794 1.25338 1.95019 1.23452 0.79168 0.98388 0.97605 0.91606 1.23008 0.99783 0.96218 0.98832 1.21163 0.90409 0.97289 0.85754 1.44377 1.11467 1.59295 1.18146 1.19073 0.91600 1.27311 0.97569 0.90409 1.24821 0.98167 1.00010 0.97590 1.69965 1.26956 1.37629 1.22525 0.86091 0.82266 0.77034 0.80209 1.21610 1.20686 1.21642 1.21933 0.88822 0.95821 0.94082 0.92924 0.92789 0.92765 0.92052 0.92096 0.91951 0.91898 0.91812 0.91922 0.91357 0.91211 0.93616 0.93863 0.91962 0.91526 0.93384 0.93619 0.93731 0.95469 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.13 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.12 -0.96 5.21 -26.74 -0.14 -1.10 16 4 C -0.12 -1.06 5.21 -26.74 -0.14 -1.20 16 5 C -0.12 -1.32 5.58 -26.73 -0.15 -1.47 16 6 C 0.06 0.85 5.77 37.16 0.21 1.07 16 7 O -0.38 -6.73 10.15 -35.23 -0.36 -7.09 16 8 C 0.07 1.41 3.56 -24.46 -0.09 1.32 16 9 H 0.07 1.24 7.83 -51.93 -0.41 0.83 16 10 C -0.14 -2.85 6.68 -24.90 -0.17 -3.02 16 11 C 0.18 4.53 5.37 -3.06 -0.02 4.51 16 12 N -0.61 -16.24 3.39 -169.94 -0.58 -16.81 16 13 C -0.23 -6.54 10.28 -15.06 -0.15 -6.70 16 14 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 15 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 16 N -0.92 -27.67 10.31 55.49 0.57 -27.10 16 17 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 C 0.12 2.69 6.97 -2.41 -0.02 2.68 16 22 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.05 1.32 7.38 -51.93 -0.38 0.93 16 38 H 0.05 1.27 7.51 -51.93 -0.39 0.88 16 39 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 327.96 15.07 4.94 4.94 Total: -1.00 -30.69 327.96 -8.90 -39.59 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -7.91 Total: -4.98 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -0.54 Total: -5.99 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.00 Total: -43.91 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.36 Total: -7.09 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.69 -8.90 -39.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224670058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.496 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds