Wall clock time and date at job start Sun Mar 29 2020 22:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47178 * 2 1 4 4 C 1.52996 * 109.47486 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47486 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47178 * 179.97438 * 5 4 3 7 7 O 1.42900 * 109.47168 * 179.97438 * 6 5 4 8 8 C 1.42901 * 114.00102 * 179.97438 * 7 6 5 9 9 H 1.09002 * 110.91650 * 333.90283 * 8 7 6 10 10 C 1.55157 * 111.00253 * 210.00265 * 8 7 6 11 11 C 1.54325 * 102.94184 * 206.42518 * 10 8 7 12 12 N 1.47022 * 107.26948 * 22.19107 * 11 10 8 13 13 C 1.36945 * 125.64832 * 181.02381 * 12 11 10 14 14 H 1.07997 * 119.99756 * 180.02562 * 13 12 11 15 15 C 1.38805 * 119.99878 * 0.02562 * 13 12 11 16 16 N 1.31624 * 120.00257 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00277 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00228 * 17 15 13 20 20 H 1.48499 * 109.46981 * 150.00382 * 17 15 13 21 21 C 1.47423 * 108.70390 * 1.29074 * 12 11 10 22 22 H 1.09002 * 109.47138 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46939 * 299.99849 * 1 2 3 24 24 H 1.08995 * 109.47326 * 60.00123 * 1 2 3 25 25 H 1.09003 * 109.46980 * 240.00267 * 2 1 3 26 26 H 1.08995 * 109.47326 * 119.99877 * 2 1 3 27 27 H 1.09004 * 109.47277 * 59.99824 * 3 2 1 28 28 H 1.09004 * 109.47094 * 300.00331 * 3 2 1 29 29 H 1.09004 * 109.47143 * 59.99574 * 4 3 2 30 30 H 1.09004 * 109.47088 * 300.00167 * 4 3 2 31 31 H 1.09003 * 109.46947 * 60.00080 * 5 4 3 32 32 H 1.09004 * 109.47094 * 300.00164 * 5 4 3 33 33 H 1.09003 * 109.46980 * 60.00267 * 6 5 4 34 34 H 1.08995 * 109.47326 * 299.99877 * 6 5 4 35 35 H 1.09000 * 110.72140 * 88.06348 * 10 8 7 36 36 H 1.08998 * 110.72520 * 324.78667 * 10 8 7 37 37 H 1.09002 * 109.88274 * 262.77538 * 11 10 8 38 38 H 1.08996 * 109.88444 * 141.60894 * 11 10 8 39 39 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 40 40 H 1.09000 * 110.37068 * 94.48354 * 21 12 11 41 41 H 1.09005 * 110.36651 * 216.80519 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6099 2.8850 0.0000 7 8 6.0863 4.2323 0.0000 8 6 7.5108 4.3451 0.0006 9 1 7.9708 3.4644 0.4488 10 6 7.9658 5.6396 0.7249 11 6 9.3276 5.9441 0.0657 12 7 9.3412 5.2685 -1.2400 13 6 10.3813 5.2744 -2.1309 14 1 10.2924 4.7453 -3.0682 15 6 11.5497 5.9603 -1.8291 16 7 11.6582 6.6047 -0.6865 17 14 12.9687 5.9676 -3.0440 18 1 13.8656 4.8176 -2.7645 19 1 12.4375 5.8566 -4.4262 20 1 13.7310 7.2346 -2.9069 21 6 8.0473 4.5892 -1.4343 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9330 0.9288 -0.8909 30 1 3.9337 0.9286 0.8891 31 1 3.7170 3.3983 0.8905 32 1 3.7162 3.3994 -0.8895 33 1 5.9733 2.3716 -0.8903 34 1 5.9733 2.3708 0.8897 35 1 8.0859 5.4617 1.7936 36 1 7.2603 6.4507 0.5447 37 1 10.1353 5.5612 0.6896 38 1 9.4407 7.0194 -0.0720 39 1 12.4749 7.0837 -0.4755 40 1 7.3638 5.2277 -1.9940 41 1 8.1909 3.6405 -1.9516 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224670058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:30 Heat of formation + Delta-G solvation = -69.993660 kcal Electronic energy + Delta-G solvation = -17125.572021 eV Core-core repulsion = 14425.430042 eV Total energy + Delta-G solvation = -2700.141979 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.91682 -37.96519 -36.85466 -34.37127 -33.41522 -31.12082 -29.36768 -28.47394 -26.36225 -24.62692 -22.27730 -22.10179 -21.83496 -21.57001 -18.96993 -17.89082 -17.05289 -16.71821 -16.23106 -15.92917 -15.54074 -15.05074 -14.65416 -14.46842 -14.04941 -13.95822 -13.86725 -13.49543 -13.07481 -12.87466 -12.82615 -12.65082 -12.29445 -12.15089 -12.09458 -12.03623 -11.81789 -11.75204 -11.61649 -11.46879 -11.34598 -11.32913 -10.73807 -10.42186 -8.95108 -7.87451 -5.24893 1.45465 1.48178 1.56998 2.44399 2.65877 3.31093 3.69852 3.82135 3.92658 3.99514 4.06750 4.13548 4.16726 4.22801 4.42354 4.49373 4.54684 4.56446 4.65481 4.76741 4.83418 4.90869 4.92982 4.95053 5.01363 5.04538 5.11654 5.14613 5.24014 5.27875 5.39809 5.41279 5.49565 5.54572 5.60661 5.70416 6.14136 6.36460 7.06403 7.72211 8.37117 9.23132 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.057097 B = 0.003334 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.277310 B = 8395.709079 C = 8754.045417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.117 4.117 4 C -0.112 4.112 5 C -0.112 4.112 6 C 0.053 3.947 7 O -0.390 6.390 8 C 0.091 3.909 9 H 0.077 0.923 10 C -0.128 4.128 11 C 0.186 3.814 12 N -0.627 5.627 13 C -0.247 4.247 14 H 0.083 0.917 15 C -0.067 4.067 16 N -0.952 5.952 17 Si 0.984 3.016 18 H -0.283 1.283 19 H -0.269 1.269 20 H -0.293 1.293 21 C 0.116 3.884 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.020 0.980 38 H 0.010 0.990 39 H 0.249 0.751 40 H 0.022 0.978 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.570 -11.916 3.220 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.155 4.155 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.023 4.023 7 O -0.308 6.308 8 C 0.032 3.968 9 H 0.095 0.905 10 C -0.166 4.166 11 C 0.061 3.939 12 N -0.355 5.355 13 C -0.376 4.376 14 H 0.101 0.899 15 C -0.260 4.260 16 N -0.601 5.601 17 Si 0.812 3.188 18 H -0.209 1.209 19 H -0.194 1.194 20 H -0.219 1.219 21 C -0.010 4.010 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.029 0.971 39 H 0.058 0.942 40 H 0.040 0.960 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.520 -11.683 3.200 22.130 hybrid contribution 1.237 0.205 -0.586 1.384 sum -17.283 -11.478 2.614 20.911 Atomic orbital electron populations 1.21785 0.95562 1.01897 1.01875 1.21540 0.96174 0.96466 1.02151 1.21586 0.94471 0.97228 1.02215 1.21489 0.96057 0.94813 1.02646 1.21498 0.92201 0.98272 1.02945 1.22777 0.96026 0.82960 1.00555 1.87850 1.20159 1.27915 1.94917 1.23115 0.80473 0.98154 0.95077 0.90472 1.22848 0.96746 0.97046 0.99954 1.20919 0.92573 0.94922 0.85469 1.44687 1.12550 1.59901 1.18322 1.19482 0.92520 1.27312 0.98278 0.89904 1.25734 1.00854 0.99867 0.99533 1.70185 1.27337 1.38305 1.24258 0.84999 0.78698 0.76757 0.78371 1.20935 1.19378 1.21911 1.22079 0.87063 0.95509 0.96354 0.92323 0.92649 0.92804 0.92034 0.91820 0.91814 0.92108 0.91655 0.91263 0.91254 0.91789 0.93413 0.92513 0.89335 0.91063 0.96182 0.97145 0.94196 0.96043 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.13 -1.57 5.93 30.59 0.18 -1.39 16 3 C -0.12 -1.66 5.21 30.59 0.16 -1.50 16 4 C -0.11 -1.78 5.21 30.59 0.16 -1.62 16 5 C -0.11 -2.27 5.58 30.59 0.17 -2.10 16 6 C 0.05 1.34 5.77 71.98 0.42 1.75 16 7 O -0.39 -12.94 10.15 -148.98 -1.51 -14.45 16 8 C 0.09 3.38 3.56 32.06 0.11 3.49 16 9 H 0.08 2.72 7.83 -2.39 -0.02 2.70 16 10 C -0.13 -5.07 6.68 31.78 0.21 -4.86 16 11 C 0.19 9.63 5.37 86.73 0.47 10.10 16 12 N -0.63 -33.97 3.39 -691.55 -2.35 -36.32 16 13 C -0.25 -14.34 10.28 84.03 0.86 -13.48 16 14 H 0.08 4.58 7.83 -2.91 -0.02 4.55 16 15 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 16 N -0.95 -58.42 10.31 21.65 0.22 -58.20 16 17 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 21 C 0.12 5.12 6.97 86.93 0.61 5.73 16 22 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 23 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.30 8.12 -2.39 -0.02 1.28 16 35 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.02 1.13 7.38 -2.39 -0.02 1.11 16 38 H 0.01 0.60 7.51 -2.39 -0.02 0.58 16 39 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -65.76 327.96 3.86 -61.90 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 0.94 Total: 6.96 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 4.53 Total: -8.34 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -2.12 Total: -94.51 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -1.51 Total: -14.45 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -65.76 3.86 -61.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224670058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.097 kcal (2) G-P(sol) polarization free energy of solvation -65.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds