Wall clock time and date at job start Sun Mar 29 2020 22:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47186 * 2 1 4 4 C 1.53004 * 109.47477 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47425 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47299 * 180.02562 * 5 4 3 7 7 O 1.42895 * 109.47194 * 179.97438 * 6 5 4 8 8 C 1.42900 * 114.00206 * 179.97438 * 7 6 5 9 9 H 1.09008 * 110.88137 * 32.42926 * 8 7 6 10 10 C 1.55154 * 111.03913 * 156.33029 * 8 7 6 11 11 C 1.54325 * 102.94303 * 153.59305 * 10 8 7 12 12 N 1.47290 * 107.30599 * 337.81911 * 11 10 8 13 13 C 1.36938 * 125.79079 * 178.92205 * 12 11 10 14 14 H 1.08005 * 119.99558 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00146 * 0.02562 * 13 12 11 16 16 N 1.31620 * 120.00086 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99779 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47294 * 89.99594 * 17 15 13 19 19 H 1.48503 * 109.46797 * 209.99511 * 17 15 13 20 20 H 1.48500 * 109.47035 * 329.99310 * 17 15 13 21 21 C 1.47425 * 108.55742 * 358.92448 * 12 11 10 22 22 H 1.08998 * 109.46944 * 59.99636 * 1 2 3 23 23 H 1.08994 * 109.46660 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46919 * 299.99366 * 1 2 3 25 25 H 1.09003 * 109.46919 * 240.00634 * 2 1 3 26 26 H 1.09004 * 109.47628 * 120.00473 * 2 1 3 27 27 H 1.09001 * 109.47130 * 60.00225 * 3 2 1 28 28 H 1.08998 * 109.47644 * 300.00567 * 3 2 1 29 29 H 1.08992 * 109.46788 * 59.99970 * 4 3 2 30 30 H 1.09004 * 109.46933 * 300.00019 * 4 3 2 31 31 H 1.08998 * 109.47252 * 59.99325 * 5 4 3 32 32 H 1.09004 * 109.46892 * 300.00238 * 5 4 3 33 33 H 1.09001 * 109.47194 * 59.99368 * 6 5 4 34 34 H 1.09004 * 109.46825 * 299.99438 * 6 5 4 35 35 H 1.09002 * 110.72290 * 271.95991 * 10 8 7 36 36 H 1.08997 * 110.72022 * 35.22763 * 10 8 7 37 37 H 1.09004 * 109.88239 * 97.22707 * 11 10 8 38 38 H 1.08995 * 109.88239 * 218.23629 * 11 10 8 39 39 H 0.96999 * 120.00175 * 180.02562 * 16 15 13 40 40 H 1.09002 * 110.36696 * 265.26054 * 21 12 11 41 41 H 1.08995 * 110.36608 * 143.04891 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8850 0.0000 6 6 5.6100 2.8851 -0.0013 7 8 6.0863 4.2323 -0.0013 8 6 7.5108 4.3452 -0.0019 9 1 7.9659 3.5190 -0.5484 10 6 7.9611 5.7114 -0.5832 11 6 9.3289 5.9412 0.0935 12 7 9.3540 5.1247 1.3191 13 6 10.4008 5.0297 2.1968 14 1 10.3178 4.3995 3.0700 15 6 11.5684 5.7435 1.9644 16 7 11.6696 6.5112 0.9001 17 14 12.9966 5.6134 3.1614 18 1 13.8888 4.5005 2.7485 19 1 13.7606 6.8868 3.1606 20 1 12.4756 5.3496 4.5268 21 6 8.0621 4.4254 1.4436 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3632 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8901 26 1 1.8935 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9564 -0.8899 29 1 3.9330 0.9288 -0.8908 30 1 3.9338 0.9285 0.8891 31 1 3.7170 3.3984 0.8904 32 1 3.7163 3.3994 -0.8895 33 1 5.9726 2.3718 -0.8919 34 1 5.9741 2.3706 0.8881 35 1 8.0716 5.6523 -1.6660 36 1 7.2581 6.4978 -0.3087 37 1 10.1307 5.6292 -0.5758 38 1 9.4455 6.9952 0.3453 39 1 12.4857 7.0097 0.7374 40 1 7.3823 4.9943 2.0778 41 1 8.2101 3.4246 1.8492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224670060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:33 Heat of formation + Delta-G solvation = -53.306428 kcal Electronic energy + Delta-G solvation = -17136.303574 eV Core-core repulsion = 14436.885208 eV Total energy + Delta-G solvation = -2699.418366 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.39596 -36.73162 -35.66663 -32.95692 -31.96148 -29.25801 -28.24414 -26.87499 -24.46242 -23.66384 -21.29191 -21.21846 -20.18788 -19.96615 -16.92620 -16.45536 -16.19027 -15.16703 -14.69364 -14.49861 -14.21633 -13.72232 -13.60707 -13.34504 -12.98417 -12.43496 -12.26421 -12.01459 -11.88361 -11.68851 -11.40672 -11.15208 -11.00048 -10.92783 -10.83018 -10.73140 -10.67527 -10.51247 -10.14362 -10.06280 -9.73245 -9.68327 -9.00857 -8.58282 -6.81303 -5.69308 -3.03058 3.41571 3.46150 3.48554 3.89689 4.51947 4.66962 4.67126 4.81626 4.96306 5.16461 5.26922 5.27668 5.45445 5.46418 5.50808 5.56040 5.59528 5.62405 5.65420 5.75267 5.79681 5.81998 5.87239 5.90193 5.96779 6.05764 6.22164 6.23068 6.34226 6.51367 6.57950 6.72643 6.77850 7.57309 7.63848 7.70083 7.85041 8.27255 9.23223 9.83581 10.50138 11.42742 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.053907 B = 0.003373 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.290409 B = 8299.808835 C = 8695.518904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.118 4.118 5 C -0.118 4.118 6 C 0.062 3.938 7 O -0.381 6.381 8 C 0.072 3.928 9 H 0.065 0.935 10 C -0.137 4.137 11 C 0.178 3.822 12 N -0.605 5.605 13 C -0.227 4.227 14 H 0.078 0.922 15 C -0.010 4.010 16 N -0.923 5.923 17 Si 0.914 3.086 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.118 3.882 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.046 0.954 39 H 0.252 0.748 40 H 0.027 0.973 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.607 -10.149 -3.739 20.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.156 4.156 5 C -0.155 4.155 6 C -0.015 4.015 7 O -0.300 6.300 8 C 0.014 3.986 9 H 0.083 0.917 10 C -0.176 4.176 11 C 0.053 3.947 12 N -0.332 5.332 13 C -0.355 4.355 14 H 0.096 0.904 15 C -0.206 4.206 16 N -0.571 5.571 17 Si 0.744 3.256 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.207 1.207 21 C -0.009 4.009 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -17.517 -9.892 -3.715 20.457 hybrid contribution 1.003 -0.266 0.603 1.200 sum -16.514 -10.158 -3.112 19.636 Atomic orbital electron populations 1.21782 0.96029 1.01449 1.01805 1.21547 0.95737 0.97087 1.02000 1.21607 0.95244 0.96613 1.02220 1.21525 0.95425 0.96363 1.02243 1.21516 0.94056 0.96796 1.03147 1.22460 0.94461 0.84757 0.99840 1.87855 1.21758 1.25366 1.95038 1.23397 0.79187 0.98419 0.97594 0.91728 1.22969 0.99723 0.95440 0.99440 1.21206 0.90313 0.95950 0.87189 1.44422 1.11287 1.51913 1.25627 1.19069 0.91312 1.23104 1.02052 0.90409 1.24820 0.98150 0.99420 0.98193 1.69957 1.27019 1.32617 1.27477 0.86091 0.82322 0.76986 0.80205 1.21608 1.21637 1.20687 1.21928 0.88918 0.95842 0.94204 0.92798 0.92924 0.92759 0.92098 0.92045 0.91895 0.91963 0.91915 0.91808 0.91215 0.91374 0.93879 0.93567 0.91882 0.91502 0.93389 0.93559 0.93721 0.95541 0.94608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.64 16 2 C -0.13 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.12 -0.96 5.21 -26.73 -0.14 -1.10 16 4 C -0.12 -1.07 5.21 -26.73 -0.14 -1.21 16 5 C -0.12 -1.32 5.58 -26.73 -0.15 -1.47 16 6 C 0.06 0.86 5.82 37.16 0.22 1.07 16 7 O -0.38 -6.74 10.16 -35.23 -0.36 -7.10 16 8 C 0.07 1.41 3.49 -24.58 -0.09 1.33 16 9 H 0.06 1.22 7.90 -51.92 -0.41 0.81 16 10 C -0.14 -2.79 6.69 -24.90 -0.17 -2.96 16 11 C 0.18 4.51 5.38 -2.92 -0.02 4.49 16 12 N -0.60 -16.22 3.40 -169.86 -0.58 -16.80 16 13 C -0.23 -6.53 10.28 -15.06 -0.15 -6.69 16 14 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 15 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 16 N -0.92 -27.65 10.33 55.49 0.57 -27.08 16 17 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C 0.12 2.64 6.96 -2.53 -0.02 2.62 16 22 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.56 8.11 -51.93 -0.42 0.14 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.05 1.31 7.39 -51.93 -0.38 0.93 16 38 H 0.05 1.28 7.51 -51.93 -0.39 0.89 16 39 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -30.68 328.06 -8.90 -39.58 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -7.92 Total: -4.97 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -0.54 Total: -6.01 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.00 Total: -43.88 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.36 Total: -7.10 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.68 -8.90 -39.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224670060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.726 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds