Wall clock time and date at job start Sun Mar 29 2020 22:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47499 * 2 1 4 4 C 1.53004 * 109.47020 * 240.00079 * 2 1 3 5 5 C 1.53000 * 109.47121 * 120.00112 * 2 1 3 6 6 C 1.52998 * 109.46810 * 59.99842 * 5 2 1 7 7 O 1.42904 * 109.46961 * 179.97438 * 6 5 2 8 8 C 1.42903 * 113.99880 * 180.02562 * 7 6 5 9 9 H 1.08994 * 110.88779 * 333.87654 * 8 7 6 10 10 C 1.55159 * 111.00089 * 210.00193 * 8 7 6 11 11 C 1.54325 * 102.94381 * 206.42362 * 10 8 7 12 12 N 1.47026 * 107.26644 * 22.19183 * 11 10 8 13 13 C 1.36935 * 125.64477 * 181.02318 * 12 11 10 14 14 H 1.08005 * 119.99877 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00369 * 359.75402 * 13 12 11 16 16 N 1.31617 * 119.99773 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00451 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47045 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47426 * 119.99572 * 17 15 13 20 20 H 1.48501 * 109.46833 * 239.99815 * 17 15 13 21 21 C 1.47420 * 108.70732 * 1.28881 * 12 11 10 22 22 H 1.09006 * 109.46996 * 300.00207 * 1 2 3 23 23 H 1.09003 * 109.46870 * 59.99850 * 1 2 3 24 24 H 1.08993 * 109.47624 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47119 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47015 * 300.00301 * 3 2 1 27 27 H 1.08998 * 109.46895 * 60.00082 * 3 2 1 28 28 H 1.09003 * 109.47027 * 299.99778 * 4 2 1 29 29 H 1.09003 * 109.47241 * 60.00298 * 4 2 1 30 30 H 1.09004 * 109.47178 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47212 * 299.99881 * 5 2 1 32 32 H 1.09004 * 109.47342 * 179.97438 * 5 2 1 33 33 H 1.09006 * 109.47473 * 60.00217 * 6 5 2 34 34 H 1.08993 * 109.47448 * 299.99930 * 6 5 2 35 35 H 1.08995 * 110.72318 * 88.05861 * 10 8 7 36 36 H 1.09004 * 110.87132 * 324.85724 * 10 8 7 37 37 H 1.08999 * 109.88324 * 262.77933 * 11 10 8 38 38 H 1.08996 * 110.01583 * 141.67989 * 11 10 8 39 39 H 0.97004 * 120.00382 * 180.02562 * 16 15 13 40 40 H 1.08998 * 110.36863 * 94.48168 * 21 12 11 41 41 H 1.08994 * 110.36906 * 216.80715 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2492 6 6 1.5299 -2.1637 1.2491 7 8 2.0067 -2.8376 2.4156 8 6 1.5855 -4.1997 2.5130 9 1 0.6509 -4.3569 1.9745 10 6 1.4530 -4.6361 3.9960 11 6 1.6818 -6.1609 3.9294 12 7 2.4251 -6.4369 2.6913 13 6 2.8093 -7.6751 2.2504 14 1 3.3550 -7.7730 1.3235 15 6 2.5025 -8.8040 2.9976 16 7 1.8427 -8.6843 4.1301 17 14 3.0272 -10.4931 2.3965 18 1 3.7502 -10.3569 1.1066 19 1 3.9219 -11.1204 3.4020 20 1 1.8262 -11.3446 2.2028 21 6 2.6939 -5.1595 2.0064 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 -1.7489 -1.2493 29 1 1.6766 -0.2074 -2.1393 30 1 3.1300 -0.7217 -1.2491 31 1 1.6766 -0.2075 2.1392 32 1 3.1300 -0.7217 1.2490 33 1 1.8932 -2.6776 0.3591 34 1 0.4399 -2.1637 1.2492 35 1 0.4565 -4.4120 4.3764 36 1 2.2156 -4.1583 4.6111 37 1 0.7230 -6.6791 3.9095 38 1 2.2625 -6.4890 4.7914 39 1 1.6286 -9.4731 4.6525 40 1 3.6795 -4.7825 2.2797 41 1 2.6213 -5.2855 0.9262 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224725424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:35 Heat of formation + Delta-G solvation = -43.813051 kcal Electronic energy + Delta-G solvation = -17826.452555 eV Core-core repulsion = 15127.445852 eV Total energy + Delta-G solvation = -2699.006702 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.75685 -37.59976 -35.61571 -32.19127 -29.78608 -28.86757 -27.46676 -27.43891 -26.86155 -24.33687 -22.96113 -20.28818 -20.02318 -18.67161 -16.93357 -16.55762 -15.45855 -14.79661 -14.71303 -14.39786 -14.33564 -14.01095 -13.34616 -13.05281 -12.70925 -12.47388 -12.17277 -12.03431 -11.84407 -11.75652 -11.66101 -11.33692 -10.97065 -10.92605 -10.79674 -10.76124 -10.52040 -10.43442 -10.11457 -10.03153 -9.72705 -9.68499 -8.94816 -8.57696 -6.80744 -5.68915 -3.02756 3.41487 3.46632 3.49429 3.92406 4.52916 4.66526 4.66550 4.79161 5.17499 5.33450 5.38638 5.44576 5.46160 5.50233 5.56565 5.58651 5.62027 5.63278 5.74551 5.78944 5.81672 5.86584 5.90255 5.95926 5.99775 6.14211 6.27915 6.29975 6.33869 6.52910 6.59163 6.73764 6.78587 7.58462 7.65121 7.71929 7.86127 8.28150 9.24045 9.84273 10.50453 11.42878 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.045951 B = 0.004300 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.194936 B = 6510.391345 C = 6852.478274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.147 4.147 5 C -0.107 4.107 6 C 0.059 3.941 7 O -0.382 6.382 8 C 0.073 3.927 9 H 0.065 0.935 10 C -0.140 4.140 11 C 0.178 3.822 12 N -0.605 5.605 13 C -0.227 4.227 14 H 0.079 0.921 15 C -0.009 4.009 16 N -0.922 5.922 17 Si 0.913 3.087 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.120 3.880 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.252 0.748 40 H 0.027 0.973 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.350 17.410 -7.212 18.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.197 4.197 4 C -0.204 4.204 5 C -0.144 4.144 6 C -0.018 4.018 7 O -0.300 6.300 8 C 0.015 3.985 9 H 0.083 0.917 10 C -0.178 4.178 11 C 0.053 3.947 12 N -0.333 5.333 13 C -0.356 4.356 14 H 0.096 0.904 15 C -0.205 4.205 16 N -0.570 5.570 17 Si 0.743 3.257 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.218 1.218 21 C -0.006 4.006 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.250 17.283 -7.007 18.785 hybrid contribution 0.088 -1.077 -0.440 1.166 sum -2.162 16.206 -7.447 17.966 Atomic orbital electron populations 1.21964 0.94628 1.02118 1.01619 1.20502 0.95717 0.95445 0.95141 1.21852 1.01056 0.95166 1.01607 1.21973 1.01228 1.00563 0.96643 1.21554 1.01459 0.94007 0.97422 1.22624 0.97578 0.92842 0.88735 1.87854 1.74979 1.24552 1.42659 1.23434 0.96911 0.80236 0.97945 0.91677 1.22998 1.00869 0.99544 0.94405 1.21163 0.96791 0.87109 0.89590 1.44381 1.65444 1.00734 1.22730 1.19125 1.29915 0.81965 1.04546 0.90360 1.24815 1.00721 0.97906 0.97097 1.69973 1.44614 1.27813 1.14621 0.86024 0.77715 0.84143 0.77776 1.20507 1.21723 1.21751 1.21927 0.95807 0.87246 0.95644 0.92566 0.92791 0.92244 0.92582 0.92709 0.92646 0.92167 0.92800 0.92468 0.91307 0.91173 0.93350 0.93604 0.92009 0.91538 0.93457 0.93553 0.93794 0.95490 0.94576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.12 37.15 0.30 -1.00 16 2 C -0.07 -0.64 0.80 -154.51 -0.12 -0.76 16 3 C -0.14 -1.13 8.47 37.16 0.31 -0.82 16 4 C -0.15 -1.36 8.12 37.16 0.30 -1.06 16 5 C -0.11 -1.22 4.64 -26.73 -0.12 -1.35 16 6 C 0.06 0.81 5.07 37.16 0.19 1.00 16 7 O -0.38 -6.73 10.15 -35.23 -0.36 -7.08 16 8 C 0.07 1.42 3.56 -24.46 -0.09 1.34 16 9 H 0.07 1.22 7.83 -51.93 -0.41 0.82 16 10 C -0.14 -2.84 6.68 -24.89 -0.17 -3.01 16 11 C 0.18 4.51 5.38 -3.06 -0.02 4.50 16 12 N -0.61 -16.22 3.39 -169.94 -0.58 -16.80 16 13 C -0.23 -6.53 10.28 -15.06 -0.15 -6.69 16 14 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 15 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 16 N -0.92 -27.60 10.31 55.49 0.57 -27.02 16 17 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 C 0.12 2.70 6.97 -2.41 -0.02 2.68 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.66 6.43 -51.93 -0.33 0.33 16 34 H 0.05 0.60 6.41 -51.93 -0.33 0.26 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.05 1.30 7.40 -51.93 -0.38 0.91 16 38 H 0.05 1.29 7.48 -51.93 -0.39 0.90 16 39 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 318.69 15.07 4.80 4.80 Total: -1.00 -30.65 318.69 -7.82 -38.46 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -7.56 Total: -4.24 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 0.32 Total: -5.53 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.00 Total: -43.82 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.36 Total: -7.08 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.65 -7.82 -38.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224725424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.351 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds