Wall clock time and date at job start Sun Mar 29 2020 22:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47499 * 2 1 4 4 C 1.53004 * 109.47020 * 240.00079 * 2 1 3 5 5 C 1.53000 * 109.47121 * 120.00112 * 2 1 3 6 6 C 1.52998 * 109.46810 * 59.99842 * 5 2 1 7 7 O 1.42904 * 109.46961 * 179.97438 * 6 5 2 8 8 C 1.42903 * 113.99880 * 180.02562 * 7 6 5 9 9 H 1.08994 * 110.88779 * 333.87654 * 8 7 6 10 10 C 1.55159 * 111.00089 * 210.00193 * 8 7 6 11 11 C 1.54325 * 102.94381 * 206.42362 * 10 8 7 12 12 N 1.47026 * 107.26644 * 22.19183 * 11 10 8 13 13 C 1.36935 * 125.64477 * 181.02318 * 12 11 10 14 14 H 1.08005 * 119.99877 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00369 * 359.75402 * 13 12 11 16 16 N 1.31617 * 119.99773 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00451 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47045 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47426 * 119.99572 * 17 15 13 20 20 H 1.48501 * 109.46833 * 239.99815 * 17 15 13 21 21 C 1.47420 * 108.70732 * 1.28881 * 12 11 10 22 22 H 1.09006 * 109.46996 * 300.00207 * 1 2 3 23 23 H 1.09003 * 109.46870 * 59.99850 * 1 2 3 24 24 H 1.08993 * 109.47624 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47119 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47015 * 300.00301 * 3 2 1 27 27 H 1.08998 * 109.46895 * 60.00082 * 3 2 1 28 28 H 1.09003 * 109.47027 * 299.99778 * 4 2 1 29 29 H 1.09003 * 109.47241 * 60.00298 * 4 2 1 30 30 H 1.09004 * 109.47178 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47212 * 299.99881 * 5 2 1 32 32 H 1.09004 * 109.47342 * 179.97438 * 5 2 1 33 33 H 1.09006 * 109.47473 * 60.00217 * 6 5 2 34 34 H 1.08993 * 109.47448 * 299.99930 * 6 5 2 35 35 H 1.08995 * 110.72318 * 88.05861 * 10 8 7 36 36 H 1.09004 * 110.87132 * 324.85724 * 10 8 7 37 37 H 1.08999 * 109.88324 * 262.77933 * 11 10 8 38 38 H 1.08996 * 110.01583 * 141.67989 * 11 10 8 39 39 H 0.97004 * 120.00382 * 180.02562 * 16 15 13 40 40 H 1.08998 * 110.36863 * 94.48168 * 21 12 11 41 41 H 1.08994 * 110.36906 * 216.80715 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2492 6 6 1.5299 -2.1637 1.2491 7 8 2.0067 -2.8376 2.4156 8 6 1.5855 -4.1997 2.5130 9 1 0.6509 -4.3569 1.9745 10 6 1.4530 -4.6361 3.9960 11 6 1.6818 -6.1609 3.9294 12 7 2.4251 -6.4369 2.6913 13 6 2.8093 -7.6751 2.2504 14 1 3.3550 -7.7730 1.3235 15 6 2.5025 -8.8040 2.9976 16 7 1.8427 -8.6843 4.1301 17 14 3.0272 -10.4931 2.3965 18 1 3.7502 -10.3569 1.1066 19 1 3.9219 -11.1204 3.4020 20 1 1.8262 -11.3446 2.2028 21 6 2.6939 -5.1595 2.0064 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 -1.7489 -1.2493 29 1 1.6766 -0.2074 -2.1393 30 1 3.1300 -0.7217 -1.2491 31 1 1.6766 -0.2075 2.1392 32 1 3.1300 -0.7217 1.2490 33 1 1.8932 -2.6776 0.3591 34 1 0.4399 -2.1637 1.2492 35 1 0.4565 -4.4120 4.3764 36 1 2.2156 -4.1583 4.6111 37 1 0.7230 -6.6791 3.9095 38 1 2.2625 -6.4890 4.7914 39 1 1.6286 -9.4731 4.6525 40 1 3.6795 -4.7825 2.2797 41 1 2.6213 -5.2855 0.9262 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224725424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:34 Heat of formation + Delta-G solvation = -61.305283 kcal Electronic energy + Delta-G solvation = -17827.211075 eV Core-core repulsion = 15127.445852 eV Total energy + Delta-G solvation = -2699.765222 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.06169 -38.82256 -37.17021 -34.20801 -31.35534 -30.35386 -28.68757 -28.13911 -28.10406 -26.34814 -24.00951 -22.07871 -21.86004 -19.48837 -18.94424 -17.99161 -16.73893 -16.59919 -16.10470 -15.70175 -15.38664 -15.18007 -14.68263 -14.48513 -14.06972 -14.01787 -13.63823 -13.31621 -13.00152 -12.91771 -12.75700 -12.58393 -12.52974 -12.44884 -12.10258 -12.02881 -11.98804 -11.79069 -11.56950 -11.44940 -11.39155 -11.26614 -10.74460 -10.37102 -8.94970 -7.87374 -5.24762 1.45843 1.47429 1.57955 2.44494 2.66493 3.31369 3.70394 3.81227 3.89045 3.92421 3.97684 4.06681 4.15483 4.28658 4.47170 4.53805 4.58436 4.64867 4.75059 4.80212 4.83607 4.94320 4.94781 4.97015 5.02951 5.05975 5.08886 5.12222 5.18085 5.24123 5.41446 5.42248 5.52939 5.53565 5.60651 5.70556 6.14224 6.36985 7.06555 7.72270 8.37240 9.23319 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.045951 B = 0.004300 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.194936 B = 6510.391345 C = 6852.478274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 C -0.138 4.138 4 C -0.148 4.148 5 C -0.102 4.102 6 C 0.052 3.948 7 O -0.389 6.389 8 C 0.092 3.908 9 H 0.076 0.924 10 C -0.127 4.127 11 C 0.186 3.814 12 N -0.627 5.627 13 C -0.248 4.248 14 H 0.083 0.917 15 C -0.065 4.065 16 N -0.951 5.951 17 Si 0.983 3.017 18 H -0.265 1.265 19 H -0.291 1.291 20 H -0.289 1.289 21 C 0.117 3.883 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.019 0.981 38 H 0.011 0.989 39 H 0.249 0.751 40 H 0.021 0.979 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.578 18.661 -8.455 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.065 4.065 3 C -0.195 4.195 4 C -0.205 4.205 5 C -0.140 4.140 6 C -0.024 4.024 7 O -0.308 6.308 8 C 0.033 3.967 9 H 0.094 0.906 10 C -0.166 4.166 11 C 0.061 3.939 12 N -0.354 5.354 13 C -0.376 4.376 14 H 0.101 0.899 15 C -0.258 4.258 16 N -0.600 5.600 17 Si 0.811 3.189 18 H -0.190 1.190 19 H -0.218 1.218 20 H -0.216 1.216 21 C -0.009 4.009 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.029 0.971 39 H 0.058 0.942 40 H 0.039 0.961 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.471 18.571 -8.274 20.480 hybrid contribution 0.182 -1.404 -0.082 1.418 sum -2.289 17.167 -8.356 19.230 Atomic orbital electron populations 1.21967 0.94111 1.01873 1.02386 1.20496 0.96103 0.95954 0.93961 1.21835 1.01066 0.94242 1.02350 1.21983 1.01126 1.00181 0.97210 1.21557 1.01079 0.92639 0.98692 1.22894 0.98407 0.93731 0.87334 1.87845 1.75302 1.23242 1.44427 1.23096 0.95997 0.80820 0.96813 0.90610 1.22838 1.02535 0.95618 0.95566 1.20920 0.94534 0.90363 0.88083 1.44688 1.65509 1.01665 1.23584 1.19526 1.30009 0.83242 1.04866 0.89913 1.25713 1.01006 1.01743 0.97348 1.70188 1.45597 1.28515 1.15701 0.84942 0.77206 0.79076 0.77670 1.18959 1.21793 1.21565 1.22065 0.96661 0.86357 0.95838 0.92293 0.91606 0.92967 0.92614 0.91582 0.92326 0.93090 0.91529 0.92685 0.91220 0.91773 0.93284 0.92451 0.89394 0.91060 0.96239 0.97066 0.94215 0.96071 0.93803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.12 71.98 0.58 -1.67 16 2 C -0.07 -1.07 0.80 -52.18 -0.04 -1.12 16 3 C -0.14 -1.90 8.47 71.98 0.61 -1.29 16 4 C -0.15 -2.45 8.12 71.98 0.58 -1.87 16 5 C -0.10 -2.15 4.64 30.59 0.14 -2.01 16 6 C 0.05 1.35 5.07 71.98 0.36 1.71 16 7 O -0.39 -13.01 10.15 -148.98 -1.51 -14.53 16 8 C 0.09 3.43 3.56 32.06 0.11 3.55 16 9 H 0.08 2.70 7.83 -2.39 -0.02 2.68 16 10 C -0.13 -5.07 6.68 31.78 0.21 -4.86 16 11 C 0.19 9.63 5.38 86.73 0.47 10.10 16 12 N -0.63 -33.99 3.39 -691.56 -2.35 -36.34 16 13 C -0.25 -14.38 10.28 84.03 0.86 -13.52 16 14 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 15 C -0.07 -3.79 5.49 84.86 0.47 -3.32 16 16 N -0.95 -58.27 10.31 21.65 0.22 -58.05 16 17 Si 0.98 46.39 29.55 68.60 2.03 48.42 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 21 C 0.12 5.17 6.97 86.93 0.61 5.78 16 22 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.05 0.87 6.43 -2.39 -0.02 0.86 16 25 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.93 6.43 -2.39 -0.02 0.92 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.42 8.14 -2.38 -0.02 1.41 16 33 H 0.05 1.27 6.43 -2.38 -0.02 1.25 16 34 H 0.06 1.36 6.41 -2.39 -0.02 1.35 16 35 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 37 H 0.02 1.10 7.40 -2.39 -0.02 1.08 16 38 H 0.01 0.64 7.48 -2.39 -0.02 0.62 16 39 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -65.73 318.69 4.32 -61.40 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 0.96 Total: 7.60 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 4.97 Total: -8.51 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -2.12 Total: -94.38 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -1.51 Total: -14.53 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -65.73 4.32 -61.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224725424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.098 kcal (2) G-P(sol) polarization free energy of solvation -65.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds