Wall clock time and date at job start Sun Mar 29 2020 22:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47055 * 2 1 4 4 C 1.53004 * 109.47465 * 239.99979 * 2 1 3 5 5 C 1.53001 * 109.47267 * 119.99745 * 2 1 3 6 6 C 1.53005 * 109.46874 * 60.00145 * 5 2 1 7 7 O 1.42901 * 109.46918 * 180.02562 * 6 5 2 8 8 C 1.42904 * 113.99935 * 180.02562 * 7 6 5 9 9 H 1.09002 * 110.63643 * 31.68166 * 8 7 6 10 10 C 1.55155 * 110.71835 * 155.02246 * 8 7 6 11 11 C 1.54917 * 101.57721 * 153.86407 * 10 8 7 12 12 N 1.47425 * 104.83228 * 322.98868 * 11 10 8 13 13 C 1.36938 * 125.64597 * 204.16507 * 12 11 10 14 14 H 1.07999 * 119.99555 * 161.46897 * 13 12 11 15 15 C 1.38807 * 120.00205 * 341.47221 * 13 12 11 16 16 N 1.31612 * 120.00090 * 157.61633 * 15 13 12 17 17 Si 1.86806 * 119.99962 * 337.62150 * 15 13 12 18 18 H 1.48505 * 109.47043 * 84.53327 * 17 15 13 19 19 H 1.48500 * 109.46817 * 204.53488 * 17 15 13 20 20 H 1.48499 * 109.47221 * 324.53624 * 17 15 13 21 21 C 1.47016 * 108.70082 * 24.12995 * 12 11 10 22 22 H 1.09000 * 109.47252 * 299.99921 * 1 2 3 23 23 H 1.08994 * 109.47314 * 59.99962 * 1 2 3 24 24 H 1.08999 * 109.47319 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46610 * 180.02562 * 3 2 1 26 26 H 1.08995 * 109.46823 * 299.99697 * 3 2 1 27 27 H 1.08991 * 109.46956 * 60.00056 * 3 2 1 28 28 H 1.08999 * 109.46632 * 300.00152 * 4 2 1 29 29 H 1.09003 * 109.46760 * 59.99584 * 4 2 1 30 30 H 1.08996 * 109.47580 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.47257 * 300.00331 * 5 2 1 32 32 H 1.09006 * 109.47378 * 179.97438 * 5 2 1 33 33 H 1.09000 * 109.47027 * 60.00045 * 6 5 2 34 34 H 1.08996 * 109.47118 * 299.99806 * 6 5 2 35 35 H 1.09008 * 111.00317 * 271.93402 * 10 8 7 36 36 H 1.08992 * 111.00891 * 35.78629 * 10 8 7 37 37 H 1.08996 * 110.36188 * 204.14453 * 11 10 8 38 38 H 1.09001 * 110.45653 * 81.87770 * 11 10 8 39 39 H 0.97002 * 120.00288 * 179.97438 * 16 15 13 40 40 H 1.09007 * 109.88373 * 239.51869 * 21 12 11 41 41 H 1.09005 * 109.88589 * 118.36398 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 6 1.5300 -2.1637 1.2493 7 8 2.0059 -2.8372 2.4164 8 6 1.5847 -4.1992 2.5139 9 1 1.4788 -4.6405 1.5228 10 6 2.5756 -5.0195 3.3813 11 6 1.6606 -6.1509 3.9129 12 7 0.3593 -5.5016 4.1548 13 6 -0.6004 -5.9385 5.0284 14 1 -1.3744 -5.2633 5.3622 15 6 -0.5784 -7.2492 5.4850 16 7 -1.1812 -7.5637 6.6119 17 14 0.3069 -8.5666 4.5001 18 1 1.7502 -8.5603 4.8500 19 1 -0.2737 -9.8960 4.8177 20 1 0.1482 -8.2908 3.0496 21 6 0.2632 -4.3069 3.3035 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.6767 -1.7489 -1.2492 29 1 1.6766 -0.2074 -2.1392 30 1 3.1300 -0.7209 -1.2495 31 1 1.6766 -0.2074 2.1393 32 1 3.1300 -0.7216 1.2491 33 1 1.8933 -2.6776 0.3593 34 1 0.4400 -2.1638 1.2493 35 1 3.3845 -5.4245 2.7731 36 1 2.9686 -4.4175 4.2005 37 1 2.0605 -6.5572 4.8419 38 1 1.5583 -6.9398 3.1677 39 1 -1.1662 -8.4797 6.9308 40 1 0.1281 -3.4201 3.9229 41 1 -0.5740 -4.4100 2.6130 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224725426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:36 Heat of formation + Delta-G solvation = -60.311824 kcal Electronic energy + Delta-G solvation = -17913.173614 eV Core-core repulsion = 15213.451471 eV Total energy + Delta-G solvation = -2699.722143 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.21268 -38.92329 -37.27055 -34.40264 -31.74681 -30.41944 -29.28382 -28.14687 -28.11795 -26.08429 -24.03016 -22.72748 -21.79080 -19.50805 -18.98844 -18.07630 -17.24483 -16.65449 -16.10299 -15.84819 -15.35337 -15.23921 -15.03902 -14.70131 -14.19875 -13.97511 -13.83373 -13.57558 -13.16569 -13.07807 -12.89126 -12.65548 -12.55552 -12.53720 -12.25914 -12.14737 -12.01083 -11.65250 -11.50375 -11.45003 -11.43788 -11.26688 -10.85783 -10.41437 -9.10944 -8.21004 -5.49341 1.30138 1.38273 1.48043 2.39846 2.57194 3.00357 3.36950 3.70186 3.82025 3.89705 3.90791 3.97006 4.10135 4.27169 4.32169 4.44112 4.52392 4.57799 4.68432 4.75189 4.79429 4.81589 4.90975 4.93757 4.94199 4.96868 5.05346 5.07021 5.11678 5.14002 5.19789 5.23984 5.41437 5.51862 5.53501 5.62513 6.05810 6.33069 6.71063 7.48955 8.04830 8.98956 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047790 B = 0.004581 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.757998 B = 6110.307646 C = 6306.458287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.145 4.145 5 C -0.103 4.103 6 C 0.051 3.949 7 O -0.389 6.389 8 C 0.091 3.909 9 H 0.090 0.910 10 C -0.113 4.113 11 C 0.102 3.898 12 N -0.627 5.627 13 C -0.244 4.244 14 H 0.054 0.946 15 C -0.036 4.036 16 N -0.956 5.956 17 Si 0.950 3.050 18 H -0.264 1.264 19 H -0.304 1.304 20 H -0.267 1.267 21 C 0.111 3.889 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.034 0.966 39 H 0.264 0.736 40 H 0.027 0.973 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.578 14.225 -17.770 24.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.065 4.065 3 C -0.196 4.196 4 C -0.203 4.203 5 C -0.141 4.141 6 C -0.025 4.025 7 O -0.308 6.308 8 C 0.032 3.968 9 H 0.107 0.893 10 C -0.151 4.151 11 C -0.022 4.022 12 N -0.355 5.355 13 C -0.372 4.372 14 H 0.072 0.928 15 C -0.231 4.231 16 N -0.603 5.603 17 Si 0.778 3.222 18 H -0.189 1.189 19 H -0.233 1.233 20 H -0.192 1.192 21 C -0.014 4.014 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.127 0.873 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.591 14.210 -17.488 24.490 hybrid contribution -0.507 -0.963 0.119 1.094 sum 9.085 13.247 -17.370 23.658 Atomic orbital electron populations 1.21987 0.94649 1.01828 1.02117 1.20490 0.95667 0.96004 0.94310 1.21842 1.01240 0.94362 1.02143 1.21963 1.01332 1.00223 0.96739 1.21556 1.01360 0.92790 0.98346 1.22902 0.98307 0.93906 0.87352 1.87890 1.73995 1.23792 1.45093 1.22975 0.92835 0.82522 0.98453 0.89251 1.22768 0.97022 0.95462 0.99816 1.22120 0.85819 0.95792 0.98491 1.44758 1.15028 1.28858 1.46818 1.18573 1.06788 0.94820 1.17060 0.92818 1.25680 1.00380 0.99123 0.97869 1.69976 1.49951 1.19667 1.20660 0.85885 0.78691 0.77939 0.79706 1.18911 1.23266 1.19190 1.21952 0.97298 0.89450 0.92743 0.92981 0.91561 0.92955 0.92215 0.91630 0.92827 0.92702 0.91719 0.92159 0.92178 0.91020 0.91775 0.93446 0.87294 0.90577 0.93562 0.94861 0.92661 0.95446 0.95065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.12 71.98 0.58 -1.82 16 2 C -0.06 -1.01 0.80 -52.18 -0.04 -1.05 16 3 C -0.14 -1.85 8.47 71.98 0.61 -1.24 16 4 C -0.15 -2.00 8.12 71.98 0.58 -1.42 16 5 C -0.10 -2.04 4.64 30.60 0.14 -1.90 16 6 C 0.05 1.20 5.10 71.98 0.37 1.57 16 7 O -0.39 -11.87 10.07 -148.98 -1.50 -13.37 16 8 C 0.09 2.96 3.40 31.78 0.11 3.07 16 9 H 0.09 2.52 7.88 -2.39 -0.02 2.50 16 10 C -0.11 -3.73 6.81 31.99 0.22 -3.51 16 11 C 0.10 4.39 4.70 86.86 0.41 4.80 16 12 N -0.63 -31.75 3.21 -691.99 -2.22 -33.97 16 13 C -0.24 -14.74 10.57 84.03 0.89 -13.85 16 14 H 0.05 3.53 8.06 -2.91 -0.02 3.51 16 15 C -0.04 -2.18 5.43 84.86 0.46 -1.71 16 16 N -0.96 -61.76 13.97 21.65 0.30 -61.46 16 17 Si 0.95 47.24 24.27 68.60 1.66 48.91 16 18 H -0.26 -12.15 6.49 99.48 0.65 -11.51 16 19 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 20 H -0.27 -12.68 6.66 99.48 0.66 -12.02 16 21 C 0.11 4.65 7.02 86.73 0.61 5.26 16 22 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.05 0.92 6.43 -2.39 -0.02 0.90 16 25 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.79 6.43 -2.39 -0.02 0.78 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.38 8.14 -2.38 -0.02 1.37 16 33 H 0.06 1.30 6.39 -2.39 -0.02 1.28 16 34 H 0.05 1.15 6.43 -2.39 -0.02 1.13 16 35 H 0.11 2.78 8.14 -2.38 -0.02 2.76 16 36 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.05 2.13 6.64 -2.39 -0.02 2.11 16 38 H 0.03 1.41 5.57 -2.39 -0.01 1.40 16 39 H 0.26 16.09 8.31 -92.71 -0.77 15.31 16 40 H 0.03 1.22 8.06 -2.38 -0.02 1.20 16 41 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -68.87 312.84 4.05 -64.83 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 0.86 Total: 6.86 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 4.94 Total: -11.81 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -1.92 Total: -95.42 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -1.50 Total: -13.37 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.66 Total: 48.91 kcal Total: -68.87 4.05 -64.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224725426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.515 kcal (2) G-P(sol) polarization free energy of solvation -68.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds