Wall clock time and date at job start Sun Mar 29 2020 22:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46733 * 2 1 4 4 O 1.42897 * 109.47119 * 240.00222 * 2 1 3 5 5 C 1.52993 * 109.46898 * 119.99815 * 2 1 3 6 6 N 1.46897 * 109.47308 * 53.88011 * 5 2 1 7 7 C 1.46906 * 111.00087 * 77.86641 * 6 5 2 8 8 C 1.50694 * 109.47456 * 191.67002 * 7 6 5 9 9 H 1.08004 * 119.99845 * 5.07253 * 8 7 6 10 10 C 1.37878 * 120.00395 * 185.07730 * 8 7 6 11 11 N 1.31514 * 119.99784 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00205 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47135 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47206 * 119.99713 * 12 10 8 15 15 H 1.48502 * 109.46954 * 239.99954 * 12 10 8 16 16 C 1.46895 * 111.00412 * 201.81798 * 6 5 2 17 17 C 1.54275 * 110.03122 * 66.39660 * 16 6 5 18 18 C 1.54957 * 104.15930 * 217.13883 * 17 16 6 19 19 C 1.54883 * 102.78020 * 37.88912 * 18 17 16 20 20 C 1.53875 * 110.03201 * 309.18314 * 16 6 5 21 21 H 1.08998 * 109.47165 * 304.74638 * 1 2 3 22 22 H 1.08996 * 109.47376 * 64.74362 * 1 2 3 23 23 H 1.09000 * 109.47390 * 184.74686 * 1 2 3 24 24 H 1.09000 * 109.47211 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.47733 * 299.99686 * 3 2 1 26 26 H 1.09000 * 109.47668 * 60.00661 * 3 2 1 27 27 H 0.96696 * 114.00260 * 179.97438 * 4 2 1 28 28 H 1.08996 * 109.47456 * 293.87654 * 5 2 1 29 29 H 1.09002 * 109.46915 * 173.87576 * 5 2 1 30 30 H 1.09003 * 109.47023 * 311.67318 * 7 6 5 31 31 H 1.08998 * 109.47234 * 71.66708 * 7 6 5 32 32 H 0.96998 * 120.00027 * 180.02562 * 11 10 8 33 33 H 1.08997 * 110.02109 * 187.79137 * 16 6 5 34 34 H 1.09004 * 110.48007 * 335.78610 * 17 16 6 35 35 H 1.09004 * 110.48308 * 98.42871 * 17 16 6 36 36 H 1.09007 * 110.72262 * 279.57087 * 18 17 16 37 37 H 1.08998 * 110.92189 * 156.29600 * 18 17 16 38 38 H 1.09000 * 110.48743 * 203.40311 * 19 18 17 39 39 H 1.08997 * 110.60086 * 80.81942 * 19 18 17 40 40 H 1.09004 * 110.03043 * 238.56442 * 20 16 6 41 41 H 1.09000 * 110.03560 * 359.97438 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 1.4335 -2.0569 1.3254 7 6 2.0933 -2.9883 0.4005 8 6 1.2774 -4.2505 0.2915 9 1 0.3205 -4.3195 0.7876 10 6 1.7523 -5.3173 -0.4416 11 7 2.9173 -5.2331 -1.0461 12 14 0.7406 -6.8817 -0.5773 13 1 -0.5221 -6.7226 0.1880 14 1 0.4251 -7.1449 -2.0044 15 1 1.5146 -8.0214 -0.0230 16 6 1.4638 -2.5713 2.7010 17 6 0.5504 -1.7175 3.6047 18 6 1.3093 -1.6488 4.9540 19 6 2.7885 -1.5330 4.5095 20 6 2.8863 -2.4544 3.2762 21 1 -0.3633 0.5857 0.8444 22 1 -0.3634 0.4384 -0.9294 23 1 -0.3634 -1.0241 0.0850 24 1 3.1299 1.4426 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 2.9703 -0.7114 -1.2331 28 1 1.7689 -0.1480 2.1358 29 1 3.1244 -0.8171 1.1961 30 1 2.1787 -2.5248 -0.5824 31 1 3.0877 -3.2297 0.7759 32 1 3.2513 -5.9835 -1.5621 33 1 1.1387 -3.6115 2.7177 34 1 0.4255 -0.7189 3.1861 35 1 -0.4176 -2.2016 3.7348 36 1 1.1500 -2.5586 5.5329 37 1 1.0080 -0.7712 5.5258 38 1 3.4528 -1.8820 5.3001 39 1 3.0279 -0.5049 4.2376 40 1 3.2510 -3.4379 3.5728 41 1 3.5542 -2.0164 2.5344 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252354392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:42 Heat of formation + Delta-G solvation = -59.442779 kcal Electronic energy + Delta-G solvation = -19070.129438 eV Core-core repulsion = 16370.444980 eV Total energy + Delta-G solvation = -2699.684458 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.15917 -37.17164 -34.04614 -32.44595 -31.54018 -28.31410 -27.34631 -27.01448 -26.78610 -23.94587 -21.62453 -20.26448 -19.91740 -18.45374 -16.14842 -16.13609 -15.54352 -15.08677 -14.69400 -14.34203 -14.03819 -13.36265 -13.08570 -12.91842 -12.42704 -11.98810 -11.86600 -11.77211 -11.65081 -11.33725 -11.08334 -10.99507 -10.86419 -10.73615 -10.65178 -10.57224 -10.38251 -10.14801 -10.10552 -9.80556 -9.71956 -9.31776 -8.75935 -8.23716 -7.03718 -5.90769 -3.88637 3.36658 3.44177 3.48844 4.51227 4.70616 4.90208 5.07904 5.12038 5.25697 5.36035 5.45620 5.49441 5.64022 5.80425 5.85033 5.92361 5.97445 6.01936 6.05209 6.10787 6.13687 6.17108 6.22771 6.30172 6.37969 6.44580 6.51173 6.57391 6.67091 6.77799 7.02636 7.05925 7.53186 7.58747 7.94594 8.30017 8.33630 8.40853 8.71886 9.18998 9.73364 11.20217 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.009589 C = 0.007188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.375575 B = 2919.297135 C = 3894.349408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.133 3.867 3 C -0.176 4.176 4 O -0.543 6.543 5 C 0.030 3.970 6 N -0.518 5.518 7 C 0.175 3.825 8 C -0.496 4.496 9 H 0.059 0.941 10 C 0.054 3.946 11 N -0.900 5.900 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.287 1.287 16 C 0.088 3.912 17 C -0.117 4.117 18 C -0.125 4.125 19 C -0.121 4.121 20 C -0.153 4.153 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.087 0.913 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.368 0.632 28 H 0.067 0.933 29 H 0.025 0.975 30 H 0.063 0.937 31 H -0.012 1.012 32 H 0.257 0.743 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.924 10.950 7.725 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.091 3.909 3 C -0.234 4.234 4 O -0.348 6.348 5 C -0.099 4.099 6 N -0.241 5.241 7 C 0.050 3.950 8 C -0.535 4.535 9 H 0.077 0.923 10 C -0.147 4.147 11 N -0.540 5.540 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.214 1.214 16 C -0.022 4.022 17 C -0.155 4.155 18 C -0.163 4.163 19 C -0.159 4.159 20 C -0.192 4.192 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.106 0.894 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.215 0.785 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.006 0.994 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.954 10.811 7.339 13.212 hybrid contribution 1.174 -0.967 0.277 1.546 sum -0.780 9.843 7.616 12.470 Atomic orbital electron populations 1.21570 0.92612 1.04292 0.99877 1.21182 0.95538 0.88802 0.85334 1.22507 1.00970 0.97906 1.02059 1.86677 1.25873 1.78714 1.43555 1.22698 0.96205 0.93456 0.97591 1.62275 1.55252 1.01325 1.05211 1.20146 0.91951 0.90370 0.92485 1.21197 1.04422 0.97759 1.30115 0.92289 1.24934 0.95091 0.98598 0.96041 1.69961 1.18755 1.31409 1.33893 0.86552 0.80340 0.83456 0.77707 1.19812 1.21173 1.21386 1.22289 0.91859 0.99721 0.88306 1.22496 0.98418 1.00504 0.94109 1.22499 0.95462 1.00827 0.97507 1.22318 0.96480 0.99366 0.97713 1.22814 1.00039 0.99353 0.97020 0.92784 0.93611 0.89441 0.92951 0.92167 0.92193 0.78538 0.91467 0.95660 0.91918 0.99426 0.93314 0.89067 0.91499 0.91987 0.91872 0.92401 0.92630 0.92478 0.92271 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.70 37.16 0.32 -1.76 16 2 C 0.13 2.18 1.17 -90.62 -0.11 2.07 16 3 C -0.18 -2.27 8.81 37.16 0.33 -1.95 16 4 O -0.54 -10.35 10.22 -35.23 -0.36 -10.71 16 5 C 0.03 0.51 3.02 -3.83 -0.01 0.50 16 6 N -0.52 -10.67 3.25 -226.75 -0.74 -11.41 16 7 C 0.18 4.45 4.36 -4.98 -0.02 4.43 16 8 C -0.50 -13.98 8.27 -34.44 -0.28 -14.27 16 9 H 0.06 1.67 7.52 -52.48 -0.39 1.28 16 10 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 11 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 12 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 C 0.09 1.66 2.82 -66.59 -0.19 1.47 16 17 C -0.12 -1.81 6.17 -25.03 -0.15 -1.97 16 18 C -0.13 -1.65 6.91 -24.70 -0.17 -1.82 16 19 C -0.12 -1.68 6.83 -25.07 -0.17 -1.85 16 20 C -0.15 -2.67 5.34 -25.61 -0.14 -2.80 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.09 1.72 7.28 -51.93 -0.38 1.34 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.37 6.09 8.91 45.56 0.41 6.50 16 28 H 0.07 1.05 6.04 -51.93 -0.31 0.74 16 29 H 0.03 0.45 6.66 -51.93 -0.35 0.11 16 30 H 0.06 1.70 5.04 -51.93 -0.26 1.43 16 31 H -0.01 -0.33 7.09 -51.93 -0.37 -0.70 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.09 1.99 6.90 -51.93 -0.36 1.63 16 34 H 0.07 1.01 6.25 -51.93 -0.32 0.69 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 1.17 5.49 -51.93 -0.28 0.88 16 LS Contribution 310.54 15.07 4.68 4.68 Total: -1.00 -30.14 310.54 -7.80 -37.94 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.41 Total: 5.12 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -0.69 Total: -16.49 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.00 Total: -37.64 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.36 Total: -10.71 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.14 -7.80 -37.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252354392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.502 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds