Wall clock time and date at job start Sun Mar 29 2020 22:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47449 * 2 1 4 4 C 1.52996 * 109.47449 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47205 * 305.00134 * 4 3 2 6 6 O 1.42901 * 109.46902 * 64.99784 * 4 3 2 7 7 C 1.52999 * 109.47359 * 184.99636 * 4 3 2 8 8 N 1.46901 * 109.47247 * 180.65990 * 7 4 3 9 9 C 1.46845 * 110.99792 * 169.67051 * 8 7 4 10 10 C 1.53038 * 109.51944 * 185.84358 * 9 8 7 11 11 C 1.53117 * 109.27880 * 300.81996 * 10 9 8 12 12 C 1.50699 * 109.57339 * 177.59457 * 11 10 9 13 13 H 1.08002 * 120.00036 * 240.28805 * 12 11 10 14 14 C 1.37876 * 120.00352 * 60.28840 * 12 11 10 15 15 N 1.31511 * 119.99708 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00037 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47219 * 60.00019 * 16 14 12 18 18 H 1.48503 * 109.46888 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47187 * 299.99802 * 16 14 12 20 20 C 1.53116 * 109.15977 * 57.65850 * 11 10 9 21 21 C 1.46846 * 111.00199 * 293.88539 * 8 7 4 22 22 H 1.08992 * 109.47286 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47018 * 300.00558 * 1 2 3 24 24 H 1.08999 * 109.46999 * 59.99924 * 1 2 3 25 25 H 1.08995 * 109.47331 * 239.99870 * 2 1 3 26 26 H 1.08999 * 109.46999 * 120.00075 * 2 1 3 27 27 H 1.09005 * 109.46941 * 59.99711 * 3 2 1 28 28 H 1.08999 * 109.47081 * 300.00025 * 3 2 1 29 29 H 0.96697 * 114.00002 * 60.00170 * 6 4 3 30 30 H 1.08995 * 109.47319 * 300.66696 * 7 4 3 31 31 H 1.09006 * 109.46555 * 60.66437 * 7 4 3 32 32 H 1.09001 * 109.46165 * 305.85802 * 9 8 7 33 33 H 1.09000 * 109.46334 * 65.82728 * 9 8 7 34 34 H 1.09003 * 109.50354 * 180.87953 * 10 9 8 35 35 H 1.09001 * 109.53814 * 60.78804 * 10 9 8 36 36 H 1.08994 * 109.52206 * 297.75178 * 11 10 9 37 37 H 0.97005 * 119.99872 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.50156 * 182.40153 * 20 11 10 39 39 H 1.09003 * 109.53562 * 62.30636 * 20 11 10 40 40 H 1.09000 * 109.46210 * 294.17181 * 21 8 7 41 41 H 1.09001 * 109.46451 * 54.15467 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 8 4.0458 0.8732 -1.2220 7 6 4.0801 2.8795 0.1250 8 7 5.5490 2.8809 0.1085 9 6 6.0725 4.2468 -0.0194 10 6 7.5938 4.1986 -0.1795 11 6 8.2089 3.5084 1.0410 12 6 9.7017 3.4044 0.8632 13 1 10.1778 2.4351 0.8500 14 6 10.4599 4.5467 0.7173 15 7 9.8802 5.7271 0.7328 16 14 12.3105 4.4177 0.4976 17 1 12.6101 3.6297 -0.7249 18 1 12.8890 5.7788 0.3627 19 1 12.9034 3.7423 1.6796 20 6 7.6111 2.1056 1.1795 21 6 6.0894 2.2144 1.3002 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.7601 1.3478 -2.0146 30 1 3.7068 3.4719 -0.7103 31 1 3.7269 3.3097 1.0622 32 1 5.6303 4.7249 -0.8935 33 1 5.8193 4.8180 0.8738 34 1 7.9837 5.2134 -0.2587 35 1 7.8480 3.6398 -1.0802 36 1 7.9884 4.0884 1.9371 37 1 10.4136 6.5307 0.6298 38 1 8.0135 1.6249 2.0712 39 1 7.8650 1.5128 0.3007 40 1 5.8361 2.7950 2.1873 41 1 5.6596 1.2163 1.3845 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252787364.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:19 Heat of formation + Delta-G solvation = -76.463817 kcal Electronic energy + Delta-G solvation = -18012.898233 eV Core-core repulsion = 15312.475688 eV Total energy + Delta-G solvation = -2700.422546 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.82514 -37.11835 -34.16326 -33.71630 -31.43923 -29.94737 -29.20865 -26.49333 -24.55350 -22.58096 -21.81505 -21.11892 -20.68386 -18.52796 -16.41105 -16.27147 -15.97923 -14.98567 -14.63981 -14.60119 -14.28825 -13.68093 -13.49137 -13.18260 -12.72175 -12.37660 -12.27424 -12.10101 -11.82039 -11.45295 -11.35784 -11.26109 -10.88806 -10.79425 -10.76502 -10.61160 -10.45257 -10.14345 -9.98229 -9.62188 -9.37096 -8.86192 -8.66284 -8.24363 -7.64990 -5.92751 -3.97762 3.36244 3.40234 3.43621 4.20222 4.49214 4.66796 4.76161 4.89422 4.96397 5.15597 5.31972 5.37263 5.42249 5.50783 5.66656 5.69330 5.77382 5.83324 5.91608 5.93465 5.97480 6.14914 6.19096 6.23157 6.26144 6.41586 6.64169 6.69795 6.93270 7.15254 7.23109 7.48925 7.67983 7.72591 7.88612 7.91154 8.11157 8.21015 8.53939 9.05773 9.66266 11.13464 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.062376 B = 0.004369 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.782356 B = 6407.832070 C = 6557.988387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.151 4.151 4 C 0.111 3.889 5 H 0.095 0.905 6 O -0.545 6.545 7 C 0.021 3.979 8 N -0.524 5.524 9 C 0.058 3.942 10 C -0.103 4.103 11 C 0.048 3.952 12 C -0.509 4.509 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.106 4.106 21 C 0.060 3.940 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.368 0.632 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.053 0.947 33 H 0.020 0.980 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.019 0.981 37 H 0.259 0.741 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.020 0.980 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.189 -6.440 -1.597 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.190 4.190 4 C 0.051 3.949 5 H 0.113 0.887 6 O -0.349 6.349 7 C -0.108 4.108 8 N -0.249 5.249 9 C -0.070 4.070 10 C -0.142 4.142 11 C 0.030 3.970 12 C -0.548 4.548 13 H 0.072 0.928 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.143 4.143 21 C -0.068 4.068 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.214 0.786 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.701 -6.926 -1.601 17.235 hybrid contribution 0.392 1.017 0.305 1.132 sum -15.309 -5.908 -1.296 16.460 Atomic orbital electron populations 1.21789 0.96218 1.01419 1.01552 1.21448 0.95199 0.96539 1.02625 1.22327 0.96585 0.97552 1.02501 1.21946 0.91045 0.93526 0.88380 0.88699 1.86605 1.77265 1.56003 1.15022 1.22812 0.90480 0.97055 1.00420 1.61925 1.04128 1.18915 1.39935 1.22280 0.99246 0.87052 0.98384 1.21649 0.89056 1.03819 0.99633 1.18673 0.94272 0.90000 0.94085 1.21193 0.92016 0.92460 1.49106 0.92800 1.24969 0.98290 0.95463 0.95328 1.69870 1.35231 0.97323 1.50862 0.86690 0.85879 0.76928 0.78674 1.20294 1.21409 1.20393 1.21661 0.91478 1.00825 1.00373 1.22150 0.97755 0.97154 0.89738 0.92893 0.92979 0.92910 0.91277 0.92155 0.91388 0.91747 0.78565 0.91202 0.94976 0.92861 0.96208 0.89050 0.93771 0.96289 0.93106 0.93356 0.92373 0.96192 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -1.12 5.83 -26.73 -0.16 -1.27 16 3 C -0.15 -1.46 4.89 -26.73 -0.13 -1.59 16 4 C 0.11 1.38 2.84 -26.73 -0.08 1.30 16 5 H 0.10 1.28 6.47 -51.93 -0.34 0.95 16 6 O -0.55 -7.48 12.73 -35.23 -0.45 -7.92 16 7 C 0.02 0.30 4.63 -3.82 -0.02 0.28 16 8 N -0.52 -9.56 4.51 -234.67 -1.06 -10.62 16 9 C 0.06 1.16 5.46 -3.83 -0.02 1.14 16 10 C -0.10 -2.50 5.12 -26.65 -0.14 -2.64 16 11 C 0.05 1.23 2.16 -91.65 -0.20 1.04 16 12 C -0.51 -14.33 8.56 -34.44 -0.29 -14.63 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 15 N -0.89 -25.83 11.37 55.43 0.63 -25.20 16 16 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 C -0.11 -2.32 5.32 -26.65 -0.14 -2.46 16 21 C 0.06 1.12 5.29 -3.83 -0.02 1.10 16 22 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.37 3.89 9.04 45.56 0.41 4.31 16 30 H 0.07 0.91 7.98 -51.93 -0.41 0.50 16 31 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.05 0.98 8.01 -51.93 -0.42 0.56 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 35 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 1.00 6.24 -51.93 -0.32 0.68 16 LS Contribution 318.41 15.07 4.80 4.80 Total: -1.00 -29.57 318.41 -8.86 -38.43 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.84 Total: 0.84 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -0.92 Total: -16.95 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.43 Total: -35.82 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.45 Total: -7.92 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.57 -8.86 -38.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252787364.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.035 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds