Wall clock time and date at job start Sun Mar 29 2020 22:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47449 * 2 1 4 4 C 1.52996 * 109.47449 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47205 * 305.00134 * 4 3 2 6 6 O 1.42901 * 109.46902 * 64.99784 * 4 3 2 7 7 C 1.52999 * 109.47359 * 184.99636 * 4 3 2 8 8 N 1.46901 * 109.47247 * 180.65990 * 7 4 3 9 9 C 1.46845 * 110.99792 * 169.67051 * 8 7 4 10 10 C 1.53038 * 109.51944 * 185.84358 * 9 8 7 11 11 C 1.53117 * 109.27880 * 300.81996 * 10 9 8 12 12 C 1.50699 * 109.57339 * 177.59457 * 11 10 9 13 13 H 1.08002 * 120.00036 * 240.28805 * 12 11 10 14 14 C 1.37876 * 120.00352 * 60.28840 * 12 11 10 15 15 N 1.31511 * 119.99708 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00037 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47219 * 60.00019 * 16 14 12 18 18 H 1.48503 * 109.46888 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47187 * 299.99802 * 16 14 12 20 20 C 1.53116 * 109.15977 * 57.65850 * 11 10 9 21 21 C 1.46846 * 111.00199 * 293.88539 * 8 7 4 22 22 H 1.08992 * 109.47286 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47018 * 300.00558 * 1 2 3 24 24 H 1.08999 * 109.46999 * 59.99924 * 1 2 3 25 25 H 1.08995 * 109.47331 * 239.99870 * 2 1 3 26 26 H 1.08999 * 109.46999 * 120.00075 * 2 1 3 27 27 H 1.09005 * 109.46941 * 59.99711 * 3 2 1 28 28 H 1.08999 * 109.47081 * 300.00025 * 3 2 1 29 29 H 0.96697 * 114.00002 * 60.00170 * 6 4 3 30 30 H 1.08995 * 109.47319 * 300.66696 * 7 4 3 31 31 H 1.09006 * 109.46555 * 60.66437 * 7 4 3 32 32 H 1.09001 * 109.46165 * 305.85802 * 9 8 7 33 33 H 1.09000 * 109.46334 * 65.82728 * 9 8 7 34 34 H 1.09003 * 109.50354 * 180.87953 * 10 9 8 35 35 H 1.09001 * 109.53814 * 60.78804 * 10 9 8 36 36 H 1.08994 * 109.52206 * 297.75178 * 11 10 9 37 37 H 0.97005 * 119.99872 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.50156 * 182.40153 * 20 11 10 39 39 H 1.09003 * 109.53562 * 62.30636 * 20 11 10 40 40 H 1.09000 * 109.46210 * 294.17181 * 21 8 7 41 41 H 1.09001 * 109.46451 * 54.15467 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 8 4.0458 0.8732 -1.2220 7 6 4.0801 2.8795 0.1250 8 7 5.5490 2.8809 0.1085 9 6 6.0725 4.2468 -0.0194 10 6 7.5938 4.1986 -0.1795 11 6 8.2089 3.5084 1.0410 12 6 9.7017 3.4044 0.8632 13 1 10.1778 2.4351 0.8500 14 6 10.4599 4.5467 0.7173 15 7 9.8802 5.7271 0.7328 16 14 12.3105 4.4177 0.4976 17 1 12.6101 3.6297 -0.7249 18 1 12.8890 5.7788 0.3627 19 1 12.9034 3.7423 1.6796 20 6 7.6111 2.1056 1.1795 21 6 6.0894 2.2144 1.3002 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.7601 1.3478 -2.0146 30 1 3.7068 3.4719 -0.7103 31 1 3.7269 3.3097 1.0622 32 1 5.6303 4.7249 -0.8935 33 1 5.8193 4.8180 0.8738 34 1 7.9837 5.2134 -0.2587 35 1 7.8480 3.6398 -1.0802 36 1 7.9884 4.0884 1.9371 37 1 10.4136 6.5307 0.6298 38 1 8.0135 1.6249 2.0712 39 1 7.8650 1.5128 0.3007 40 1 5.8361 2.7950 2.1873 41 1 5.6596 1.2163 1.3845 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252787364.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:19 Heat of formation + Delta-G solvation = -96.232256 kcal Electronic energy + Delta-G solvation = -18013.755457 eV Core-core repulsion = 15312.475688 eV Total energy + Delta-G solvation = -2701.279769 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.17870 -38.40195 -35.58290 -34.90975 -33.26907 -31.56911 -30.44296 -28.01751 -26.03690 -24.12630 -23.37623 -22.04203 -21.92798 -20.35165 -18.45151 -17.38946 -16.97075 -16.66110 -16.19976 -15.74232 -15.59337 -14.98089 -14.78145 -14.46597 -14.26534 -14.12358 -13.87811 -13.12965 -12.96128 -12.83199 -12.75543 -12.54314 -12.52200 -12.25685 -12.08986 -11.99125 -11.88759 -11.58585 -11.47747 -11.35315 -10.85299 -10.66439 -10.58433 -10.34594 -9.10616 -8.08001 -6.21489 1.41151 1.42917 1.50446 2.43968 2.96132 3.18544 3.71093 3.77643 4.07816 4.13852 4.22095 4.25914 4.35473 4.37137 4.48914 4.57326 4.67108 4.69639 4.78111 4.81285 4.89700 4.93769 4.97179 5.03678 5.09449 5.15894 5.23758 5.28794 5.34289 5.44330 5.51039 5.55981 5.62741 6.00352 6.03122 6.31516 6.35086 6.41285 6.89430 7.03675 7.46017 8.96445 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.062376 B = 0.004369 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.782356 B = 6407.832070 C = 6557.988387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.142 4.142 4 C 0.116 3.884 5 H 0.083 0.917 6 O -0.565 6.565 7 C 0.022 3.978 8 N -0.533 5.533 9 C 0.069 3.931 10 C -0.094 4.094 11 C 0.045 3.955 12 C -0.536 4.536 13 H 0.049 0.951 14 C 0.012 3.988 15 N -0.918 5.918 16 Si 0.954 3.046 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.272 1.272 20 C -0.099 4.099 21 C 0.067 3.933 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.381 0.619 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.013 0.987 34 H 0.061 0.939 35 H 0.028 0.972 36 H -0.012 1.012 37 H 0.260 0.740 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.019 0.981 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.483 -7.019 -1.948 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.180 4.180 4 C 0.057 3.943 5 H 0.101 0.899 6 O -0.371 6.371 7 C -0.106 4.106 8 N -0.258 5.258 9 C -0.059 4.059 10 C -0.133 4.133 11 C 0.026 3.974 12 C -0.574 4.574 13 H 0.067 0.933 14 C -0.186 4.186 15 N -0.557 5.557 16 Si 0.780 3.220 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.137 4.137 21 C -0.061 4.061 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.229 0.771 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.006 0.994 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.037 0.963 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.016 -7.512 -1.956 18.703 hybrid contribution 0.788 1.191 0.410 1.486 sum -16.228 -6.321 -1.546 17.484 Atomic orbital electron populations 1.21765 0.94999 1.01921 1.02043 1.21428 0.96239 0.96142 1.01955 1.22230 0.94192 0.98016 1.03538 1.21891 0.92835 0.91867 0.87715 0.89881 1.86572 1.77839 1.56709 1.15964 1.22945 0.87432 0.98756 1.01513 1.61865 1.06942 1.17359 1.39597 1.22047 0.96300 0.88512 0.99037 1.21407 0.92282 1.01404 0.98193 1.18645 0.93682 0.91832 0.93196 1.21567 0.93735 0.92482 1.49631 0.93267 1.25747 1.02823 0.95116 0.94934 1.70007 1.36758 0.97829 1.51128 0.85676 0.80424 0.77141 0.78801 1.19745 1.20778 1.19713 1.21528 0.93984 0.98231 0.99954 1.22038 0.95392 0.98561 0.90092 0.92473 0.92521 0.92367 0.92150 0.92701 0.90558 0.90455 0.77055 0.89548 0.94215 0.90741 0.96855 0.92030 0.95279 0.99419 0.93043 0.93102 0.93421 0.96252 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.12 -1.96 5.83 30.59 0.18 -1.78 16 3 C -0.14 -2.31 4.89 30.59 0.15 -2.16 16 4 C 0.12 2.62 2.84 30.59 0.09 2.70 16 5 H 0.08 2.07 6.47 -2.39 -0.02 2.05 16 6 O -0.56 -14.29 12.73 -148.98 -1.90 -16.19 16 7 C 0.02 0.55 4.63 86.30 0.40 0.95 16 8 N -0.53 -18.64 4.51 -896.36 -4.04 -22.68 16 9 C 0.07 2.72 5.46 86.33 0.47 3.19 16 10 C -0.09 -4.67 5.12 30.65 0.16 -4.52 16 11 C 0.04 2.36 2.16 -11.46 -0.02 2.34 16 12 C -0.54 -30.85 8.56 25.60 0.22 -30.63 16 13 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 14 C 0.01 0.69 5.31 84.65 0.45 1.14 16 15 N -0.92 -54.14 11.37 21.45 0.24 -53.90 16 16 Si 0.95 44.76 29.54 68.60 2.03 46.78 16 17 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 20 C -0.10 -4.39 5.32 30.65 0.16 -4.22 16 21 C 0.07 2.45 5.29 86.33 0.46 2.91 16 22 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 1.09 7.82 -2.39 -0.02 1.07 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.38 7.16 9.04 -74.06 -0.67 6.49 16 30 H 0.09 1.96 7.98 -2.39 -0.02 1.94 16 31 H 0.04 0.99 8.12 -2.38 -0.02 0.97 16 32 H 0.07 2.61 8.01 -2.39 -0.02 2.59 16 33 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 3.40 6.17 -2.39 -0.01 3.38 16 35 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 36 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 37 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 2.63 6.24 -2.39 -0.01 2.62 16 Total: -1.00 -63.87 318.41 0.06 -63.82 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.30 Total: 13.51 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 3.42 Total: -31.34 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -3.80 Total: -76.58 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -1.90 Total: -16.19 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -63.87 0.06 -63.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252787364.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.414 kcal (2) G-P(sol) polarization free energy of solvation -63.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds