Wall clock time and date at job start Sun Mar 29 2020 22:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46758 * 2 1 4 4 C 1.52995 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47303 * 55.00073 * 4 3 2 6 6 O 1.42901 * 109.47103 * 294.99795 * 4 3 2 7 7 C 1.53000 * 109.47269 * 175.00049 * 4 3 2 8 8 N 1.46892 * 109.47253 * 178.77456 * 7 4 3 9 9 C 1.46848 * 111.00173 * 51.94184 * 8 7 4 10 10 C 1.53039 * 109.52642 * 185.83638 * 9 8 7 11 11 C 1.53117 * 109.27851 * 300.82517 * 10 9 8 12 12 C 1.50704 * 109.57283 * 177.58813 * 11 10 9 13 13 H 1.07994 * 119.99817 * 240.28152 * 12 11 10 14 14 C 1.37874 * 119.99942 * 60.28710 * 12 11 10 15 15 N 1.31519 * 120.00130 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00215 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47106 * 59.99150 * 16 14 12 18 18 H 1.48495 * 109.47466 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46705 * 299.99754 * 16 14 12 20 20 C 1.53118 * 109.16487 * 57.64969 * 11 10 9 21 21 C 1.46855 * 111.00112 * 176.15099 * 8 7 4 22 22 H 1.09003 * 109.47100 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46895 * 299.99530 * 1 2 3 24 24 H 1.08996 * 109.47596 * 59.99697 * 1 2 3 25 25 H 1.08997 * 109.46908 * 240.00465 * 2 1 3 26 26 H 1.09000 * 109.47358 * 119.99846 * 2 1 3 27 27 H 1.08997 * 109.47283 * 60.00051 * 3 2 1 28 28 H 1.09000 * 109.47060 * 300.00028 * 3 2 1 29 29 H 0.96701 * 114.00432 * 300.00267 * 6 4 3 30 30 H 1.09003 * 109.46938 * 298.77908 * 7 4 3 31 31 H 1.09001 * 109.47130 * 58.77031 * 7 4 3 32 32 H 1.08994 * 109.46456 * 305.85767 * 9 8 7 33 33 H 1.09009 * 109.46077 * 65.82492 * 9 8 7 34 34 H 1.08997 * 109.50444 * 180.88186 * 10 9 8 35 35 H 1.08999 * 109.53189 * 60.78428 * 10 9 8 36 36 H 1.09003 * 109.51933 * 297.74176 * 11 10 9 37 37 H 0.97004 * 120.00060 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.50244 * 182.40356 * 20 11 10 39 39 H 1.09003 * 109.53144 * 62.30688 * 20 11 10 40 40 H 1.09000 * 109.46218 * 294.17956 * 21 8 7 41 41 H 1.08994 * 109.45887 * 54.15668 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 3.9329 0.8534 -0.8427 6 8 4.0468 0.8732 1.2201 7 6 4.0798 2.8797 -0.1264 8 7 5.5484 2.8824 -0.0975 9 6 6.0960 1.9405 -1.0821 10 6 7.6162 1.8621 -0.9246 11 6 8.2184 3.2544 -1.1327 12 6 9.7094 3.1964 -0.9208 13 1 10.1683 3.7930 -0.1463 14 6 10.4875 2.3818 -1.7157 15 7 9.9285 1.6550 -2.6585 16 14 12.3355 2.3093 -1.4526 17 1 12.6210 1.8424 -0.0721 18 1 12.9378 1.3658 -2.4283 19 1 12.9166 3.6619 -1.6477 20 6 7.5961 4.2268 -0.1268 21 6 6.0765 4.2366 -0.3075 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.7617 1.3474 2.0132 30 1 3.7340 3.3069 -1.0677 31 1 3.6989 3.4743 0.7040 32 1 5.6627 0.9535 -0.9204 33 1 5.8523 2.2837 -2.0876 34 1 8.0239 1.1748 -1.6658 35 1 7.8611 1.5055 0.0759 36 1 8.0076 3.5946 -2.1466 37 1 10.4760 1.0821 -3.2180 38 1 7.9894 5.2288 -0.2981 39 1 7.8400 3.9083 0.8867 40 1 5.8328 4.5690 -1.3165 41 1 5.6292 4.9171 0.4170 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252787366.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:21 Heat of formation + Delta-G solvation = -94.538796 kcal Electronic energy + Delta-G solvation = -18094.926916 eV Core-core repulsion = 15393.720580 eV Total energy + Delta-G solvation = -2701.206335 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.25030 -38.38915 -35.57732 -34.93148 -33.28771 -31.48736 -30.50863 -28.01498 -26.03290 -24.17182 -23.47903 -22.05523 -21.80827 -20.34621 -18.45223 -17.40062 -17.01379 -16.69002 -16.15503 -15.76847 -15.58537 -15.03217 -14.64899 -14.56533 -14.34752 -14.05512 -13.85370 -13.14233 -13.06151 -12.82627 -12.64537 -12.57506 -12.48758 -12.32467 -12.14230 -11.96168 -11.86321 -11.59409 -11.49490 -11.30904 -10.82958 -10.71693 -10.51212 -10.35556 -9.11498 -8.07539 -6.21371 1.40994 1.43092 1.50493 2.44080 2.98067 3.19010 3.66930 3.76417 4.08378 4.11981 4.23950 4.26852 4.30230 4.40355 4.44781 4.57107 4.68919 4.69409 4.75845 4.83224 4.91595 4.95209 4.97502 5.02843 5.07213 5.16892 5.24030 5.27981 5.34185 5.42865 5.49630 5.57551 5.63040 6.00342 6.03134 6.30646 6.36481 6.41066 6.90212 7.03300 7.46301 8.96908 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.043646 B = 0.004742 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.367093 B = 5903.809307 C = 6228.840141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.109 3.891 5 H 0.077 0.923 6 O -0.565 6.565 7 C 0.023 3.977 8 N -0.533 5.533 9 C 0.069 3.931 10 C -0.093 4.093 11 C 0.044 3.956 12 C -0.536 4.536 13 H 0.051 0.949 14 C 0.011 3.989 15 N -0.919 5.919 16 Si 0.955 3.045 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.271 1.271 20 C -0.099 4.099 21 C 0.065 3.935 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.383 0.617 30 H 0.038 0.962 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.009 0.991 34 H 0.057 0.943 35 H 0.026 0.974 36 H -0.013 1.013 37 H 0.260 0.740 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.019 0.981 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.648 0.632 5.633 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.177 4.177 4 C 0.050 3.950 5 H 0.095 0.905 6 O -0.372 6.372 7 C -0.105 4.105 8 N -0.258 5.258 9 C -0.059 4.059 10 C -0.131 4.131 11 C 0.026 3.974 12 C -0.574 4.574 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.558 5.558 16 Si 0.780 3.220 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.196 1.196 20 C -0.137 4.137 21 C -0.063 4.063 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.232 0.768 30 H 0.057 0.943 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.028 0.972 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.005 0.995 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.184 -0.063 5.545 18.056 hybrid contribution 0.822 0.466 -0.772 1.220 sum -16.362 0.403 4.773 17.049 Atomic orbital electron populations 1.21758 0.94779 1.01925 1.02143 1.21443 0.96424 0.96294 1.01790 1.22215 0.93908 0.97920 1.03703 1.21964 0.93217 0.92160 0.87706 0.90497 1.86590 1.77797 1.56809 1.15973 1.22941 0.87436 0.98490 1.01610 1.61916 1.06636 1.07153 1.50072 1.22046 0.96154 0.96134 0.91543 1.21382 0.92311 1.00234 0.99178 1.18659 0.93685 0.92312 0.92792 1.21578 0.93686 1.25068 1.17052 0.93063 1.25773 1.02939 0.95168 0.94866 1.70023 1.36678 1.28027 1.21091 0.85666 0.80334 0.78025 0.77954 1.19740 1.20886 1.19567 1.21534 0.93957 0.98783 0.99446 1.22070 0.95505 0.89799 0.98896 0.92558 0.92105 0.92501 0.93143 0.92146 0.89956 0.90573 0.76839 0.94332 0.88677 0.91082 0.97232 0.92411 0.95523 0.99514 0.93108 0.92794 0.93147 0.96267 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.12 -2.16 5.83 30.60 0.18 -1.99 16 3 C -0.14 -2.39 4.89 30.60 0.15 -2.24 16 4 C 0.11 2.62 2.38 30.59 0.07 2.69 16 5 H 0.08 2.19 6.27 -2.39 -0.01 2.17 16 6 O -0.57 -15.00 12.72 -148.98 -1.89 -16.89 16 7 C 0.02 0.59 4.79 86.30 0.41 1.00 16 8 N -0.53 -18.65 4.61 -896.36 -4.13 -22.78 16 9 C 0.07 2.85 5.04 86.33 0.43 3.28 16 10 C -0.09 -4.71 5.12 30.65 0.16 -4.56 16 11 C 0.04 2.32 2.16 -11.46 -0.02 2.30 16 12 C -0.54 -30.86 8.56 25.60 0.22 -30.64 16 13 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 14 C 0.01 0.62 5.31 84.65 0.45 1.07 16 15 N -0.92 -54.89 11.37 21.45 0.24 -54.65 16 16 Si 0.95 44.97 29.54 68.60 2.03 47.00 16 17 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 C -0.10 -4.28 5.32 30.64 0.16 -4.12 16 21 C 0.06 2.29 5.46 86.32 0.47 2.76 16 22 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.18 7.82 -2.39 -0.02 1.16 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.38 7.27 9.05 -74.06 -0.67 6.60 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 32 H 0.07 2.81 5.87 -2.39 -0.01 2.79 16 33 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 34 H 0.06 3.29 6.17 -2.39 -0.01 3.28 16 35 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 36 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 37 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 2.58 8.12 -2.39 -0.02 2.56 16 Total: -1.00 -64.96 317.67 -0.05 -65.01 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.30 Total: 14.11 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 3.40 Total: -31.81 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -3.89 Total: -77.42 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -1.89 Total: -16.89 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.96 -0.05 -65.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252787366.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.528 kcal (2) G-P(sol) polarization free energy of solvation -64.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds