Wall clock time and date at job start Sun Mar 29 2020 22:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47295 * 2 1 4 4 C 1.53001 * 109.47295 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47117 * 54.99666 * 4 3 2 6 6 O 1.42903 * 109.47151 * 294.99657 * 4 3 2 7 7 C 1.53008 * 109.47054 * 174.99881 * 4 3 2 8 8 N 1.46904 * 109.46761 * 184.99948 * 7 4 3 9 9 C 1.46902 * 110.99874 * 179.97438 * 8 7 4 10 10 H 1.09005 * 109.41160 * 324.86227 * 9 8 7 11 11 C 1.53005 * 109.33712 * 84.48654 * 9 8 7 12 12 C 1.53232 * 109.37855 * 183.47542 * 11 9 8 13 13 C 1.51270 * 108.69741 * 305.66359 * 12 11 9 14 14 C 1.37867 * 120.85172 * 231.22989 * 13 12 11 15 15 N 1.31515 * 120.00018 * 359.97438 * 14 13 12 16 16 Si 1.86801 * 120.00257 * 179.97438 * 14 13 12 17 17 H 1.48507 * 109.46725 * 60.00124 * 16 14 13 18 18 H 1.48499 * 109.47402 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47138 * 300.00522 * 16 14 13 20 20 C 1.51271 * 118.29945 * 51.25119 * 13 12 11 21 21 C 1.52953 * 109.41493 * 205.00211 * 9 8 7 22 22 H 1.08994 * 109.46787 * 60.00345 * 1 2 3 23 23 H 1.09000 * 109.46923 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47033 * 299.99918 * 1 2 3 25 25 H 1.09002 * 109.47333 * 239.99706 * 2 1 3 26 26 H 1.09007 * 109.47048 * 119.99539 * 2 1 3 27 27 H 1.09000 * 109.47667 * 59.99712 * 3 2 1 28 28 H 1.09001 * 109.47043 * 299.99970 * 3 2 1 29 29 H 0.96703 * 113.99781 * 299.99832 * 6 4 3 30 30 H 1.08996 * 109.46887 * 64.99866 * 7 4 3 31 31 H 1.08998 * 109.46783 * 304.99864 * 7 4 3 32 32 H 1.00899 * 111.00035 * 56.04770 * 8 7 4 33 33 H 1.09003 * 109.33509 * 63.60303 * 11 9 8 34 34 H 1.08998 * 109.65336 * 303.54748 * 11 9 8 35 35 H 1.09002 * 109.62686 * 185.85253 * 12 11 9 36 36 H 1.09001 * 109.62522 * 65.47590 * 12 11 9 37 37 H 0.97001 * 120.00180 * 179.97438 * 15 14 13 38 38 H 1.08996 * 109.62720 * 68.36253 * 20 13 12 39 39 H 1.08991 * 109.62768 * 188.93933 * 20 13 12 40 40 H 1.08997 * 109.48509 * 56.38212 * 21 9 8 41 41 H 1.09004 * 109.49182 * 296.35123 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8530 -0.8427 6 8 4.0469 0.8729 1.2202 7 6 4.0800 2.8795 -0.1264 8 7 5.5440 2.8707 -0.2474 9 6 6.0703 4.2366 -0.3710 10 1 5.3693 4.8445 -0.9431 11 6 6.2414 4.8418 1.0238 12 6 6.7076 6.2956 0.8936 13 6 7.9544 6.3303 0.0376 14 6 9.0896 6.9836 0.4680 15 7 9.0976 7.5877 1.6362 16 14 10.6163 7.0109 -0.6080 17 1 10.2969 7.6623 -1.9039 18 1 11.6911 7.7730 0.0769 19 1 11.0741 5.6197 -0.8530 20 6 7.9236 5.6301 -1.3030 21 6 7.4179 4.1989 -1.0935 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 1.6767 1.9564 0.8899 28 1 1.6767 1.9562 -0.8900 29 1 3.7619 1.3473 2.0132 30 1 3.7920 3.4460 0.7591 31 1 3.6450 3.3432 -1.0118 32 1 5.8392 2.2982 -1.0240 33 1 6.9863 4.2693 1.5767 34 1 5.2907 4.8111 1.5559 35 1 6.9306 6.6985 1.8816 36 1 5.9244 6.8906 0.4239 37 1 9.8964 8.0471 1.9392 38 1 7.2517 6.1606 -1.9777 39 1 8.9276 5.6053 -1.7262 40 1 7.2984 3.7103 -2.0605 41 1 8.1376 3.6434 -0.4921 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252798919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:38 Heat of formation + Delta-G solvation = -109.367654 kcal Electronic energy + Delta-G solvation = -17780.961217 eV Core-core repulsion = 15079.111854 eV Total energy + Delta-G solvation = -2701.849363 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.67049 -38.50561 -35.61882 -34.93318 -33.46348 -31.44828 -30.68279 -28.53748 -25.90696 -23.70301 -23.20043 -22.30253 -21.98107 -20.84520 -18.05225 -17.50713 -16.93142 -16.42576 -16.28116 -15.68281 -15.35135 -15.04651 -14.77572 -14.53075 -14.24043 -14.12432 -13.82059 -13.23029 -13.15233 -12.73476 -12.71017 -12.55384 -12.46694 -12.36851 -12.09521 -11.95760 -11.72475 -11.59818 -11.49461 -11.44362 -10.92525 -10.57272 -10.51978 -10.49216 -9.21182 -8.17037 -6.11131 1.39042 1.39902 1.48192 2.40382 3.03386 3.20667 3.71031 3.83887 4.08309 4.12808 4.15205 4.24276 4.34586 4.44828 4.57342 4.66804 4.72681 4.77122 4.79241 4.95075 4.97698 5.01258 5.05136 5.13694 5.16051 5.21174 5.24007 5.24367 5.29662 5.42597 5.49485 5.60543 5.62629 5.77628 5.90389 6.24189 6.36525 6.60195 6.95466 6.96428 7.46524 8.94428 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.055702 B = 0.004285 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.556776 B = 6532.138368 C = 6706.635546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.145 4.145 4 C 0.118 3.882 5 H 0.093 0.907 6 O -0.567 6.567 7 C 0.029 3.971 8 N -0.685 5.685 9 C 0.112 3.888 10 H 0.029 0.971 11 C -0.080 4.080 12 C 0.006 3.994 13 C -0.501 4.501 14 C 0.018 3.982 15 N -0.934 5.934 16 Si 0.946 3.054 17 H -0.265 1.265 18 H -0.294 1.294 19 H -0.265 1.265 20 C -0.012 4.012 21 C -0.103 4.103 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.381 0.619 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.341 0.659 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.022 0.978 36 H -0.004 1.004 37 H 0.263 0.737 38 H 0.022 0.978 39 H 0.028 0.972 40 H 0.063 0.937 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.844 -12.936 -5.459 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.183 4.183 4 C 0.058 3.942 5 H 0.111 0.889 6 O -0.374 6.374 7 C -0.101 4.101 8 N -0.317 5.317 9 C 0.002 3.998 10 H 0.047 0.953 11 C -0.118 4.118 12 C -0.032 4.032 13 C -0.520 4.520 14 C -0.180 4.180 15 N -0.574 5.574 16 Si 0.772 3.228 17 H -0.190 1.190 18 H -0.221 1.221 19 H -0.190 1.190 20 C -0.050 4.050 21 C -0.141 4.141 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.229 0.771 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.160 0.840 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.015 0.985 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.369 -13.295 -5.074 19.525 hybrid contribution 0.498 1.209 -0.569 1.426 sum -12.870 -12.086 -5.643 18.535 Atomic orbital electron populations 1.21776 0.95201 1.01946 1.01955 1.21424 0.96111 0.95986 1.02094 1.22248 0.94608 0.98081 1.03356 1.21891 0.92744 0.91760 0.87767 0.88913 1.86543 1.77785 1.56922 1.16122 1.22773 0.88066 0.98187 1.01034 1.60421 1.09914 1.11525 1.49801 1.21181 0.94961 0.88026 0.95584 0.95332 1.21389 0.97920 0.96619 0.95907 1.19358 0.94220 0.92796 0.96840 1.20687 0.97805 1.31163 1.02345 1.25659 1.01274 0.94992 0.96067 1.69976 1.29918 1.36497 1.21050 0.85759 0.79240 0.78574 0.79218 1.18972 1.22107 1.18978 1.19638 0.96465 0.93666 0.95269 1.21631 0.96219 0.97778 0.98456 0.92480 0.92343 0.92681 0.92215 0.92212 0.91139 0.90477 0.77088 0.91547 0.94205 0.84004 0.94866 0.94217 0.95970 0.98534 0.92841 0.95937 0.95393 0.91847 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.25 16 2 C -0.12 -1.83 5.83 30.59 0.18 -1.65 16 3 C -0.14 -2.32 4.89 30.59 0.15 -2.17 16 4 C 0.12 2.42 3.14 30.60 0.10 2.52 16 5 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 6 O -0.57 -13.61 12.82 -148.98 -1.91 -15.52 16 7 C 0.03 0.72 5.12 86.31 0.44 1.16 16 8 N -0.69 -21.02 6.25 -491.61 -3.07 -24.10 16 9 C 0.11 4.17 2.39 44.90 0.11 4.28 16 10 H 0.03 1.08 7.80 -2.38 -0.02 1.06 16 11 C -0.08 -3.51 5.46 30.67 0.17 -3.34 16 12 C 0.01 0.30 5.96 30.11 0.18 0.48 16 13 C -0.50 -27.04 5.52 -16.17 -0.09 -27.13 16 14 C 0.02 1.01 5.46 84.65 0.46 1.47 16 15 N -0.93 -56.46 12.73 21.44 0.27 -56.19 16 16 Si 0.95 44.33 26.80 68.60 1.84 46.17 16 17 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 19 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 20 C -0.01 -0.56 5.59 30.11 0.17 -0.39 16 21 C -0.10 -4.00 5.24 30.66 0.16 -3.84 16 22 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 1.03 7.82 -2.38 -0.02 1.01 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.38 7.28 9.05 -74.05 -0.67 6.61 16 30 H 0.07 1.75 7.34 -2.39 -0.02 1.73 16 31 H 0.04 0.93 8.05 -2.39 -0.02 0.91 16 32 H 0.34 9.44 8.29 -89.69 -0.74 8.70 16 33 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.04 1.59 7.35 -2.39 -0.02 1.58 16 35 H 0.02 1.27 7.07 -2.39 -0.02 1.26 16 36 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.03 1.24 5.17 -2.39 -0.01 1.22 16 40 H 0.06 2.05 8.05 -2.39 -0.02 2.03 16 41 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -62.66 318.32 -0.55 -63.21 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -0.42 Total: 16.29 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 2.74 Total: -29.86 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -2.80 Total: -80.29 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -1.91 Total: -15.52 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.84 Total: 46.17 kcal Total: -62.66 -0.55 -63.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252798919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.153 kcal (2) G-P(sol) polarization free energy of solvation -62.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds