Wall clock time and date at job start Sun Mar 29 2020 22:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47011 * 2 1 4 4 C 1.53001 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47375 * 54.99837 * 4 3 2 6 6 O 1.42900 * 109.47036 * 294.99889 * 4 3 2 7 7 C 1.53006 * 109.46955 * 175.00325 * 4 3 2 8 8 N 1.46903 * 109.46545 * 184.99800 * 7 4 3 9 9 C 1.46904 * 110.99577 * 179.97438 * 8 7 4 10 10 H 1.08997 * 109.41871 * 324.86668 * 9 8 7 11 11 C 1.52964 * 109.41202 * 84.64810 * 9 8 7 12 12 C 1.53220 * 109.40796 * 183.70396 * 11 9 8 13 13 C 1.51275 * 108.53730 * 305.37531 * 12 11 9 14 14 C 1.37878 * 120.84955 * 231.37261 * 13 12 11 15 15 N 1.31520 * 119.99815 * 348.89358 * 14 13 12 16 16 Si 1.86796 * 119.99911 * 168.90126 * 14 13 12 17 17 H 1.48496 * 109.47215 * 354.65792 * 16 14 13 18 18 H 1.48502 * 109.47114 * 114.65759 * 16 14 13 19 19 H 1.48500 * 109.47203 * 234.65344 * 16 14 13 20 20 C 1.51269 * 118.29927 * 51.34555 * 13 12 11 21 21 C 1.52954 * 109.41450 * 205.00028 * 9 8 7 22 22 H 1.08999 * 109.47102 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46989 * 299.99868 * 1 2 3 24 24 H 1.09004 * 109.46931 * 59.99948 * 1 2 3 25 25 H 1.09002 * 109.47399 * 240.00468 * 2 1 3 26 26 H 1.09002 * 109.47405 * 119.99833 * 2 1 3 27 27 H 1.09000 * 109.47136 * 60.00223 * 3 2 1 28 28 H 1.08994 * 109.47465 * 299.99867 * 3 2 1 29 29 H 0.96699 * 114.00572 * 300.00231 * 6 4 3 30 30 H 1.09001 * 109.46876 * 304.99652 * 7 4 3 31 31 H 1.09001 * 109.47406 * 64.99967 * 7 4 3 32 32 H 1.00901 * 110.99946 * 56.05000 * 8 7 4 33 33 H 1.09000 * 109.48222 * 303.68961 * 11 9 8 34 34 H 1.09001 * 109.48035 * 63.72127 * 11 9 8 35 35 H 1.08998 * 109.63028 * 185.66032 * 12 11 9 36 36 H 1.09003 * 109.78258 * 65.17796 * 12 11 9 37 37 H 0.96999 * 119.99610 * 180.02562 * 15 14 13 38 38 H 1.09000 * 109.62639 * 188.94049 * 20 13 12 39 39 H 1.08993 * 109.78220 * 68.46016 * 20 13 12 40 40 H 1.08998 * 109.48633 * 296.27673 * 21 9 8 41 41 H 1.08997 * 109.48458 * 56.31961 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8426 6 8 4.0468 0.8730 1.2201 7 6 4.0799 2.8796 -0.1263 8 7 5.5439 2.8708 -0.2473 9 6 6.0702 4.2368 -0.3708 10 1 5.3693 4.8448 -0.9427 11 6 6.2457 4.8419 1.0231 12 6 6.7064 6.2973 0.8920 13 6 7.9531 6.3319 0.0359 14 6 9.0883 6.9856 0.4661 15 7 9.0360 7.7688 1.5213 16 14 10.7004 6.7588 -0.4499 17 1 10.5262 5.7366 -1.5129 18 1 11.1059 8.0482 -1.0648 19 1 11.7506 6.3114 0.4998 20 6 7.9226 5.6305 -1.3040 21 6 7.4178 4.1991 -1.0932 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9564 -0.8899 29 1 3.7618 1.3472 2.0132 30 1 3.6449 3.3434 -1.0117 31 1 3.7919 3.4461 0.7593 32 1 5.8391 2.2983 -1.0240 33 1 5.2957 4.8079 1.5565 34 1 6.9933 4.2723 1.5751 35 1 6.9291 6.7013 1.8795 36 1 5.9227 6.8913 0.4216 37 1 9.8345 8.2290 1.8237 38 1 8.9268 5.6059 -1.7273 39 1 7.2524 6.1589 -1.9819 40 1 8.1377 3.6448 -0.4911 41 1 7.2986 3.7096 -2.0597 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252798920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:40 Heat of formation + Delta-G solvation = -85.203709 kcal Electronic energy + Delta-G solvation = -17785.104791 eV Core-core repulsion = 15084.303255 eV Total energy + Delta-G solvation = -2700.801536 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.47021 -37.08739 -34.24867 -33.91591 -31.68270 -29.62394 -29.47993 -27.06508 -24.70945 -21.99484 -21.75317 -21.23198 -20.78251 -19.11123 -16.53730 -16.17394 -15.93199 -15.05231 -14.68090 -14.44865 -14.17705 -13.72940 -13.47717 -13.20844 -12.63179 -12.62277 -12.12951 -12.01630 -11.96581 -11.67004 -11.43499 -11.32622 -10.90565 -10.83856 -10.74436 -10.71683 -10.43992 -10.10951 -9.83730 -9.72812 -9.29830 -8.83960 -8.59571 -8.34855 -7.85691 -6.06990 -3.95104 3.28872 3.38901 3.39071 4.21342 4.42191 4.60604 4.77508 4.85655 4.96234 5.13494 5.21887 5.25852 5.42584 5.49945 5.64135 5.68692 5.77734 5.79417 5.87517 5.94142 5.99340 6.14891 6.22096 6.25928 6.59635 6.71989 6.84537 6.93011 6.97582 7.14473 7.17559 7.47710 7.65383 7.69084 7.76281 7.82307 7.89485 7.95698 8.45066 9.01676 9.59253 11.02782 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.054648 B = 0.004307 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.251273 B = 6499.741466 C = 6670.590185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.152 4.152 4 C 0.111 3.889 5 H 0.092 0.908 6 O -0.550 6.550 7 C 0.028 3.972 8 N -0.681 5.681 9 C 0.100 3.900 10 H 0.028 0.972 11 C -0.091 4.091 12 C 0.010 3.990 13 C -0.485 4.485 14 C 0.075 3.925 15 N -0.888 5.888 16 Si 0.878 3.122 17 H -0.256 1.256 18 H -0.284 1.284 19 H -0.286 1.286 20 C -0.023 4.023 21 C -0.107 4.107 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.371 0.629 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.331 0.669 33 H 0.024 0.976 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.000 1.000 37 H 0.263 0.737 38 H 0.041 0.959 39 H 0.013 0.987 40 H 0.059 0.941 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.616 -11.901 -3.524 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.190 4.190 4 C 0.051 3.949 5 H 0.110 0.890 6 O -0.354 6.354 7 C -0.102 4.102 8 N -0.312 5.312 9 C -0.008 4.008 10 H 0.046 0.954 11 C -0.130 4.130 12 C -0.028 4.028 13 C -0.504 4.504 14 C -0.127 4.127 15 N -0.525 5.525 16 Si 0.706 3.294 17 H -0.181 1.181 18 H -0.210 1.210 19 H -0.212 1.212 20 C -0.061 4.061 21 C -0.145 4.145 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.218 0.782 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.148 0.852 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.018 0.982 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.032 0.968 40 H 0.077 0.923 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -12.129 -12.230 -3.133 17.508 hybrid contribution 0.300 0.654 -1.001 1.233 sum -11.830 -11.576 -4.134 17.060 Atomic orbital electron populations 1.21793 0.96157 1.01433 1.01652 1.21450 0.95295 0.96504 1.02523 1.22323 0.96415 0.97567 1.02735 1.21922 0.91411 0.93413 0.88161 0.89011 1.86569 1.77280 1.56323 1.15242 1.22695 0.89956 0.96593 1.00931 1.60577 1.07900 1.13548 1.49155 1.21473 0.95246 0.86296 0.97819 0.95352 1.21597 0.98107 0.99274 0.93983 1.19378 0.94425 0.90391 0.98609 1.20027 0.97550 1.31547 1.01302 1.24853 0.98505 0.94320 0.95051 1.69908 1.29003 1.28204 1.25426 0.86756 0.83891 0.78488 0.80224 1.18118 1.21045 1.21197 1.19928 0.97294 0.91715 0.97142 1.21748 0.96126 1.00055 0.96620 0.92891 0.92827 0.92947 0.92223 0.91308 0.91565 0.91299 0.78188 0.95252 0.90853 0.85196 0.95713 0.92731 0.92875 0.98197 0.92741 0.94119 0.96818 0.92271 0.95457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.06 5.83 -26.73 -0.16 -1.21 16 3 C -0.15 -1.41 4.89 -26.73 -0.13 -1.54 16 4 C 0.11 1.27 3.14 -26.73 -0.08 1.19 16 5 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 6 O -0.55 -7.08 12.82 -35.23 -0.45 -7.53 16 7 C 0.03 0.39 5.12 -3.82 -0.02 0.37 16 8 N -0.68 -11.29 6.26 -106.76 -0.67 -11.96 16 9 C 0.10 1.97 2.39 -67.75 -0.16 1.81 16 10 H 0.03 0.58 7.80 -51.93 -0.40 0.17 16 11 C -0.09 -2.01 5.45 -26.64 -0.15 -2.16 16 12 C 0.01 0.25 5.93 -27.49 -0.16 0.09 16 13 C -0.49 -13.04 5.48 -98.92 -0.54 -13.58 16 14 C 0.08 2.09 5.44 -17.82 -0.10 1.99 16 15 N -0.89 -26.02 12.82 55.43 0.71 -25.30 16 16 Si 0.88 21.08 27.95 -169.99 -4.75 16.33 16 17 H -0.26 -5.86 5.58 56.52 0.32 -5.55 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 C -0.02 -0.54 5.65 -27.48 -0.16 -0.70 16 21 C -0.11 -2.22 5.24 -26.63 -0.14 -2.36 16 22 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.65 7.82 -51.93 -0.41 0.25 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.37 3.83 9.05 45.56 0.41 4.24 16 30 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16 31 H 0.07 1.05 7.35 -51.93 -0.38 0.67 16 32 H 0.33 5.11 8.29 -39.29 -0.33 4.78 16 33 H 0.02 0.50 7.35 -51.93 -0.38 0.12 16 34 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.05 1.48 7.19 -51.93 -0.37 1.11 16 36 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.04 0.96 4.36 -51.93 -0.23 0.73 16 39 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.03 0.49 8.05 -51.93 -0.42 0.08 16 LS Contribution 317.31 15.07 4.78 4.78 Total: -1.00 -29.20 317.31 -8.60 -37.80 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.80 Total: 2.77 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -1.43 Total: -16.90 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.04 Total: -37.26 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.45 Total: -7.53 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.75 Total: 16.33 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.20 -8.60 -37.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252798920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.400 kcal (2) G-P(sol) polarization free energy of solvation -29.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds