Wall clock time and date at job start Sun Mar 29 2020 22:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46987 * 2 1 4 4 C 1.52997 * 109.46987 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46973 * 55.00034 * 4 3 2 6 6 O 1.42896 * 109.46999 * 294.99506 * 4 3 2 7 7 C 1.53008 * 109.47106 * 174.99789 * 4 3 2 8 8 N 1.46894 * 109.47382 * 185.00025 * 7 4 3 9 9 C 1.46894 * 111.00202 * 174.96257 * 8 7 4 10 10 C 1.50696 * 110.01950 * 304.56727 * 9 8 7 11 11 H 1.07996 * 120.00335 * 124.97390 * 10 9 8 12 12 C 1.37878 * 119.99402 * 304.97231 * 10 9 8 13 13 N 1.31510 * 120.00655 * 354.97529 * 12 10 9 14 14 Si 1.86807 * 119.99752 * 175.25299 * 12 10 9 15 15 H 1.48498 * 109.47021 * 179.72151 * 14 12 10 16 16 H 1.48500 * 109.46932 * 299.72627 * 14 12 10 17 17 H 1.48506 * 109.46963 * 59.72273 * 14 12 10 18 18 C 1.54274 * 110.03151 * 65.95705 * 9 8 7 19 19 C 1.54965 * 104.16126 * 95.75216 * 18 9 8 20 20 C 1.54889 * 102.77628 * 37.88878 * 19 18 9 21 21 C 1.53877 * 110.03374 * 183.17084 * 9 8 7 22 22 H 1.09003 * 109.47510 * 300.00244 * 1 2 3 23 23 H 1.09005 * 109.47377 * 59.99955 * 1 2 3 24 24 H 1.09001 * 109.47358 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47232 * 240.00356 * 2 1 3 26 26 H 1.08996 * 109.47123 * 119.99489 * 2 1 3 27 27 H 1.09003 * 109.47195 * 59.99563 * 3 2 1 28 28 H 1.09005 * 109.47099 * 300.00216 * 3 2 1 29 29 H 0.96696 * 114.00734 * 300.00068 * 6 4 3 30 30 H 1.08998 * 109.46805 * 65.00045 * 7 4 3 31 31 H 1.09001 * 109.47084 * 305.00398 * 7 4 3 32 32 H 1.00908 * 111.00050 * 298.92024 * 8 7 4 33 33 H 0.96993 * 120.00402 * 180.02562 * 13 12 10 34 34 H 1.08999 * 110.48678 * 214.39954 * 18 9 8 35 35 H 1.09001 * 110.48360 * 337.04580 * 18 9 8 36 36 H 1.09002 * 110.72125 * 279.57775 * 19 18 9 37 37 H 1.08995 * 110.76335 * 156.22146 * 19 18 9 38 38 H 1.08999 * 110.48894 * 203.40621 * 20 19 18 39 39 H 1.09005 * 110.48869 * 80.76142 * 20 19 18 40 40 H 1.09004 * 110.03206 * 359.95335 * 21 9 8 41 41 H 1.08994 * 110.03293 * 121.38460 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9336 0.8530 -0.8409 6 8 4.0457 0.8735 1.2220 7 6 4.0800 2.8796 -0.1251 8 7 5.5440 2.8709 -0.2449 9 6 6.0605 4.2245 -0.4874 10 6 5.3976 4.8195 -1.7029 11 1 4.8935 5.7719 -1.6312 12 6 5.4347 4.1479 -2.9065 13 7 6.1313 3.0381 -3.0191 14 14 4.5019 4.8187 -4.3794 15 1 4.7074 3.9224 -5.5454 16 1 3.0538 4.8890 -4.0581 17 1 5.0031 6.1780 -4.7056 18 6 5.8035 5.1167 0.7447 19 6 7.1288 5.0489 1.5450 20 6 8.2029 5.0454 0.4291 21 6 7.5854 4.1788 -0.6879 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.6765 1.9564 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.7601 1.3480 2.0146 30 1 3.7912 3.4463 0.7600 31 1 3.6457 3.3431 -1.0110 32 1 5.9713 2.4618 0.5726 33 1 6.1577 2.5659 -3.8659 34 1 5.5959 6.1415 0.4369 35 1 4.9786 4.7207 1.3370 36 1 7.1784 4.1316 2.1317 37 1 7.2391 5.9244 2.1846 38 1 9.1283 4.5977 0.7916 39 1 8.3834 6.0587 0.0700 40 1 7.9424 3.1522 -0.6044 41 1 7.8461 4.5869 -1.6643 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252810082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:08 Heat of formation + Delta-G solvation = -75.450911 kcal Electronic energy + Delta-G solvation = -18633.461000 eV Core-core repulsion = 15933.082378 eV Total energy + Delta-G solvation = -2700.378623 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.23582 -37.08503 -33.85520 -32.96703 -31.82846 -29.12997 -27.52342 -26.93453 -24.69246 -23.34074 -21.08697 -20.81237 -19.48744 -18.51745 -16.06411 -15.79422 -15.61665 -14.81166 -14.71045 -14.28749 -13.93016 -13.41537 -13.25996 -12.88632 -12.59568 -12.27827 -11.79826 -11.66293 -11.51704 -11.20995 -10.93868 -10.81449 -10.53760 -10.52774 -10.44160 -10.25068 -10.16654 -9.96924 -9.86349 -9.63630 -9.42552 -8.99273 -8.84334 -8.20475 -6.69653 -5.80429 -3.92032 3.34149 3.40293 3.42858 4.50278 4.82981 5.07109 5.23313 5.28209 5.40209 5.58038 5.66836 5.73424 5.78084 5.80876 5.85846 5.99818 6.09898 6.11641 6.26017 6.31056 6.38689 6.43481 6.48708 6.53652 6.67412 6.74259 6.84651 6.87419 6.96758 6.98379 7.14730 7.40979 7.45794 7.87542 7.93604 8.16688 8.34312 8.76124 8.96324 9.29640 9.72767 11.21859 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.008969 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.238459 B = 3121.024445 C = 4267.081872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.149 4.149 4 C 0.106 3.894 5 H 0.104 0.896 6 O -0.564 6.564 7 C 0.050 3.950 8 N -0.639 5.639 9 C 0.246 3.754 10 C -0.528 4.528 11 H 0.049 0.951 12 C 0.086 3.914 13 N -0.838 5.838 14 Si 0.869 3.131 15 H -0.289 1.289 16 H -0.280 1.280 17 H -0.280 1.280 18 C -0.151 4.151 19 C -0.124 4.124 20 C -0.129 4.129 21 C -0.083 4.083 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.361 0.639 30 H 0.002 0.998 31 H 0.089 0.911 32 H 0.304 0.696 33 H 0.254 0.746 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 -2.157 7.087 9.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.187 4.187 4 C 0.047 3.953 5 H 0.121 0.879 6 O -0.368 6.368 7 C -0.080 4.080 8 N -0.267 5.267 9 C 0.157 3.843 10 C -0.566 4.566 11 H 0.067 0.933 12 C -0.120 4.120 13 N -0.471 5.471 14 Si 0.697 3.303 15 H -0.214 1.214 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.191 4.191 19 C -0.161 4.161 20 C -0.167 4.167 21 C -0.122 4.122 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.206 0.794 30 H 0.020 0.980 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.927 -2.931 5.837 8.182 hybrid contribution -1.024 1.278 0.300 1.665 sum -5.951 -1.652 6.138 8.707 Atomic orbital electron populations 1.21793 0.96560 1.01053 1.01488 1.21452 0.94875 0.97093 1.02310 1.22290 0.97360 0.96810 1.02272 1.22174 0.90636 0.95742 0.86732 0.87865 1.86577 1.77329 1.57212 1.15677 1.22337 0.92200 0.93463 1.00032 1.60597 1.02147 1.23179 1.40785 1.19060 0.91539 0.83327 0.90382 1.20849 1.37254 1.05285 0.93253 0.93254 1.24881 0.94830 0.94701 0.97621 1.70097 1.37556 1.15456 1.24037 0.87066 0.80858 0.78942 0.83413 1.21442 1.20544 1.20546 1.23228 0.95056 1.01687 0.99133 1.22466 0.97131 0.99392 0.97149 1.22463 0.96879 1.00135 0.97211 1.22021 0.96272 0.97367 0.96547 0.93113 0.92937 0.93178 0.92148 0.91716 0.92407 0.91171 0.79418 0.98040 0.89304 0.87957 0.93623 0.92567 0.93851 0.92882 0.93681 0.93718 0.92940 0.93270 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.33 16 2 C -0.12 -1.58 5.83 -26.73 -0.16 -1.74 16 3 C -0.15 -2.19 4.89 -26.73 -0.13 -2.32 16 4 C 0.11 1.87 3.21 -26.73 -0.09 1.78 16 5 H 0.10 2.10 8.14 -51.93 -0.42 1.68 16 6 O -0.56 -9.37 12.48 -35.23 -0.44 -9.81 16 7 C 0.05 1.01 4.78 -3.82 -0.02 0.99 16 8 N -0.64 -14.42 5.15 -100.00 -0.51 -14.94 16 9 C 0.25 5.75 0.42 -131.64 -0.05 5.69 16 10 C -0.53 -13.81 6.27 -34.44 -0.22 -14.02 16 11 H 0.05 1.32 7.52 -52.49 -0.39 0.92 16 12 C 0.09 2.30 4.85 -17.82 -0.09 2.21 16 13 N -0.84 -23.11 11.93 55.43 0.66 -22.45 16 14 Si 0.87 20.73 29.54 -169.99 -5.02 15.71 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C -0.15 -3.12 5.82 -25.03 -0.15 -3.26 16 19 C -0.12 -2.24 6.91 -24.70 -0.17 -2.41 16 20 C -0.13 -2.48 6.83 -25.07 -0.17 -2.65 16 21 C -0.08 -1.93 5.42 -25.61 -0.14 -2.07 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.86 7.82 -51.93 -0.41 0.45 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.36 4.73 9.05 45.56 0.41 5.14 16 30 H 0.00 0.03 6.44 -51.93 -0.33 -0.30 16 31 H 0.09 2.07 6.61 -51.93 -0.34 1.73 16 32 H 0.30 6.62 8.42 -39.29 -0.33 6.29 16 33 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.06 1.20 7.66 -51.93 -0.40 0.80 16 35 H 0.04 0.86 6.17 -51.93 -0.32 0.54 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.05 1.18 7.92 -51.93 -0.41 0.77 16 41 H 0.06 1.66 7.39 -51.93 -0.38 1.28 16 LS Contribution 318.42 15.07 4.80 4.80 Total: -1.00 -27.32 318.42 -8.22 -35.54 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -6.70 Total: 10.27 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -1.01 Total: -19.13 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.15 Total: -37.38 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.44 Total: -9.81 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.32 -8.22 -35.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252810082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.912 kcal (2) G-P(sol) polarization free energy of solvation -27.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds