Wall clock time and date at job start Sun Mar 29 2020 22:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46987 * 2 1 4 4 C 1.52997 * 109.46987 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46973 * 55.00034 * 4 3 2 6 6 O 1.42896 * 109.46999 * 294.99506 * 4 3 2 7 7 C 1.53008 * 109.47106 * 174.99789 * 4 3 2 8 8 N 1.46894 * 109.47382 * 185.00025 * 7 4 3 9 9 C 1.46894 * 111.00202 * 174.96257 * 8 7 4 10 10 C 1.50696 * 110.01950 * 304.56727 * 9 8 7 11 11 H 1.07996 * 120.00335 * 124.97390 * 10 9 8 12 12 C 1.37878 * 119.99402 * 304.97231 * 10 9 8 13 13 N 1.31510 * 120.00655 * 354.97529 * 12 10 9 14 14 Si 1.86807 * 119.99752 * 175.25299 * 12 10 9 15 15 H 1.48498 * 109.47021 * 179.72151 * 14 12 10 16 16 H 1.48500 * 109.46932 * 299.72627 * 14 12 10 17 17 H 1.48506 * 109.46963 * 59.72273 * 14 12 10 18 18 C 1.54274 * 110.03151 * 65.95705 * 9 8 7 19 19 C 1.54965 * 104.16126 * 95.75216 * 18 9 8 20 20 C 1.54889 * 102.77628 * 37.88878 * 19 18 9 21 21 C 1.53877 * 110.03374 * 183.17084 * 9 8 7 22 22 H 1.09003 * 109.47510 * 300.00244 * 1 2 3 23 23 H 1.09005 * 109.47377 * 59.99955 * 1 2 3 24 24 H 1.09001 * 109.47358 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47232 * 240.00356 * 2 1 3 26 26 H 1.08996 * 109.47123 * 119.99489 * 2 1 3 27 27 H 1.09003 * 109.47195 * 59.99563 * 3 2 1 28 28 H 1.09005 * 109.47099 * 300.00216 * 3 2 1 29 29 H 0.96696 * 114.00734 * 300.00068 * 6 4 3 30 30 H 1.08998 * 109.46805 * 65.00045 * 7 4 3 31 31 H 1.09001 * 109.47084 * 305.00398 * 7 4 3 32 32 H 1.00908 * 111.00050 * 298.92024 * 8 7 4 33 33 H 0.96993 * 120.00402 * 180.02562 * 13 12 10 34 34 H 1.08999 * 110.48678 * 214.39954 * 18 9 8 35 35 H 1.09001 * 110.48360 * 337.04580 * 18 9 8 36 36 H 1.09002 * 110.72125 * 279.57775 * 19 18 9 37 37 H 1.08995 * 110.76335 * 156.22146 * 19 18 9 38 38 H 1.08999 * 110.48894 * 203.40621 * 20 19 18 39 39 H 1.09005 * 110.48869 * 80.76142 * 20 19 18 40 40 H 1.09004 * 110.03206 * 359.95335 * 21 9 8 41 41 H 1.08994 * 110.03293 * 121.38460 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9336 0.8530 -0.8409 6 8 4.0457 0.8735 1.2220 7 6 4.0800 2.8796 -0.1251 8 7 5.5440 2.8709 -0.2449 9 6 6.0605 4.2245 -0.4874 10 6 5.3976 4.8195 -1.7029 11 1 4.8935 5.7719 -1.6312 12 6 5.4347 4.1479 -2.9065 13 7 6.1313 3.0381 -3.0191 14 14 4.5019 4.8187 -4.3794 15 1 4.7074 3.9224 -5.5454 16 1 3.0538 4.8890 -4.0581 17 1 5.0031 6.1780 -4.7056 18 6 5.8035 5.1167 0.7447 19 6 7.1288 5.0489 1.5450 20 6 8.2029 5.0454 0.4291 21 6 7.5854 4.1788 -0.6879 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.6765 1.9564 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.7601 1.3480 2.0146 30 1 3.7912 3.4463 0.7600 31 1 3.6457 3.3431 -1.0110 32 1 5.9713 2.4618 0.5726 33 1 6.1577 2.5659 -3.8659 34 1 5.5959 6.1415 0.4369 35 1 4.9786 4.7207 1.3370 36 1 7.1784 4.1316 2.1317 37 1 7.2391 5.9244 2.1846 38 1 9.1283 4.5977 0.7916 39 1 8.3834 6.0587 0.0700 40 1 7.9424 3.1522 -0.6044 41 1 7.8461 4.5869 -1.6643 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252810082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:08 Heat of formation + Delta-G solvation = -93.273073 kcal Electronic energy + Delta-G solvation = -18634.233827 eV Core-core repulsion = 15933.082378 eV Total energy + Delta-G solvation = -2701.151450 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.86122 -38.55204 -34.98676 -34.70384 -33.71958 -30.52463 -29.21495 -28.60803 -26.34988 -24.97704 -22.48609 -22.04021 -21.08528 -20.36110 -17.96010 -17.19439 -17.04772 -16.58005 -16.34966 -15.90139 -15.30684 -14.88388 -14.63800 -14.25905 -14.15337 -13.92432 -13.57485 -12.98119 -12.85476 -12.69107 -12.58958 -12.40997 -12.39324 -12.03563 -11.81871 -11.68451 -11.56161 -11.51800 -11.48272 -11.35614 -11.19460 -10.80626 -10.47329 -10.22867 -8.44267 -7.85247 -6.01618 1.40534 1.43407 1.47926 2.49912 3.32739 3.53371 3.78814 4.08176 4.12838 4.16525 4.20168 4.22519 4.38613 4.49005 4.59609 4.75601 4.79326 4.85138 4.93595 4.97792 5.05054 5.07075 5.13756 5.19311 5.21574 5.25110 5.25895 5.34063 5.45762 5.47698 5.50518 5.59557 5.69585 5.82278 6.02126 6.39777 6.83987 6.97467 7.11385 7.47516 7.66084 9.14230 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.008969 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.238459 B = 3121.024445 C = 4267.081872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.141 4.141 4 C 0.120 3.880 5 H 0.070 0.930 6 O -0.569 6.569 7 C 0.058 3.942 8 N -0.654 5.654 9 C 0.236 3.764 10 C -0.535 4.535 11 H 0.038 0.962 12 C 0.049 3.951 13 N -0.862 5.862 14 Si 0.919 3.081 15 H -0.290 1.290 16 H -0.276 1.276 17 H -0.279 1.279 18 C -0.147 4.147 19 C -0.112 4.112 20 C -0.123 4.123 21 C -0.079 4.079 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.379 0.621 30 H 0.016 0.984 31 H 0.055 0.945 32 H 0.310 0.690 33 H 0.249 0.751 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.031 0.969 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.071 -1.946 8.885 10.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.179 4.179 4 C 0.061 3.939 5 H 0.088 0.912 6 O -0.375 6.375 7 C -0.072 4.072 8 N -0.283 5.283 9 C 0.147 3.853 10 C -0.574 4.574 11 H 0.056 0.944 12 C -0.156 4.156 13 N -0.497 5.497 14 Si 0.746 3.254 15 H -0.216 1.216 16 H -0.201 1.201 17 H -0.205 1.205 18 C -0.186 4.186 19 C -0.150 4.150 20 C -0.160 4.160 21 C -0.118 4.118 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.227 0.773 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.737 -2.704 7.650 9.937 hybrid contribution -0.755 1.227 -0.243 1.461 sum -6.492 -1.476 7.407 9.960 Atomic orbital electron populations 1.21758 0.94703 1.02090 1.01948 1.21416 0.96461 0.95724 1.01831 1.22199 0.94873 0.98111 1.02708 1.21826 0.92471 0.93206 0.86415 0.91200 1.86538 1.77632 1.57366 1.16005 1.22238 0.90854 0.95193 0.98916 1.60473 1.03469 1.22981 1.41336 1.19094 0.91298 0.84234 0.90720 1.21120 1.36783 1.04830 0.94685 0.94424 1.25384 0.95535 0.95003 0.99639 1.70216 1.38832 1.16508 1.24138 0.86274 0.79994 0.78210 0.80934 1.21569 1.20119 1.20477 1.23093 0.96975 1.00229 0.98349 1.22412 0.94558 1.01291 0.96702 1.22402 0.98006 0.99485 0.96156 1.21879 0.96740 0.96899 0.96317 0.92027 0.93102 0.91910 0.93379 0.91495 0.90468 0.92160 0.77284 0.96607 0.92685 0.87375 0.94188 0.93673 0.93036 0.91649 0.90961 0.91541 0.92663 0.94976 0.95369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.91 71.98 0.71 -2.27 16 2 C -0.12 -2.92 5.83 30.59 0.18 -2.74 16 3 C -0.14 -3.96 4.89 30.59 0.15 -3.81 16 4 C 0.12 4.20 3.21 30.60 0.10 4.29 16 5 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 6 O -0.57 -18.01 12.48 -148.98 -1.86 -19.87 16 7 C 0.06 2.35 4.78 86.31 0.41 2.76 16 8 N -0.65 -29.63 5.15 -470.29 -2.42 -32.05 16 9 C 0.24 11.05 0.42 3.51 0.00 11.05 16 10 C -0.54 -28.51 6.27 25.60 0.16 -28.34 16 11 H 0.04 2.04 7.52 -2.91 -0.02 2.02 16 12 C 0.05 2.64 4.85 84.66 0.41 3.05 16 13 N -0.86 -48.94 11.93 21.45 0.26 -48.69 16 14 Si 0.92 43.38 29.54 68.60 2.03 45.41 16 15 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 C -0.15 -5.82 5.82 31.70 0.18 -5.63 16 19 C -0.11 -3.72 6.91 31.91 0.22 -3.50 16 20 C -0.12 -4.49 6.83 31.67 0.22 -4.27 16 21 C -0.08 -3.71 5.42 31.32 0.17 -3.54 16 22 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.65 7.82 -2.39 -0.02 1.63 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.38 8.92 9.05 -74.06 -0.67 8.25 16 30 H 0.02 0.60 6.44 -2.39 -0.02 0.58 16 31 H 0.05 2.61 6.61 -2.39 -0.02 2.59 16 32 H 0.31 13.29 8.42 -89.69 -0.75 12.53 16 33 H 0.25 13.88 8.31 -92.71 -0.77 13.10 16 34 H 0.04 1.86 7.66 -2.39 -0.02 1.84 16 35 H 0.05 1.93 6.17 -2.39 -0.01 1.91 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.03 1.56 7.92 -2.38 -0.02 1.54 16 41 H 0.03 1.47 7.39 -2.39 -0.02 1.45 16 Total: -1.00 -59.32 318.42 0.49 -58.83 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -0.43 Total: 29.31 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 2.92 Total: -32.96 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -2.16 Total: -80.73 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -1.86 Total: -19.87 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -59.32 0.49 -58.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252810082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.441 kcal (2) G-P(sol) polarization free energy of solvation -59.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds