Wall clock time and date at job start Sun Mar 29 2020 22:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47127 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47131 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.46739 * 55.00050 * 6 5 4 8 8 O 1.42896 * 109.47375 * 295.00395 * 6 5 4 9 9 C 1.52992 * 109.47153 * 174.99932 * 6 5 4 10 10 N 1.46903 * 109.47382 * 185.00372 * 9 6 5 11 11 C 1.47488 * 110.99882 * 265.97488 * 10 9 6 12 12 C 1.53512 * 87.92925 * 221.29339 * 11 10 9 13 13 C 1.50704 * 114.34046 * 139.68353 * 12 11 10 14 14 H 1.07997 * 120.00224 * 266.07378 * 13 12 11 15 15 C 1.37875 * 120.00000 * 86.07627 * 13 12 11 16 16 N 1.31512 * 120.00131 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99925 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47283 * 90.00268 * 17 15 13 19 19 H 1.48500 * 109.46998 * 209.99797 * 17 15 13 20 20 H 1.48502 * 109.47384 * 329.99915 * 17 15 13 21 21 C 1.47481 * 111.00169 * 170.00335 * 10 9 6 22 22 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 23 23 H 1.08992 * 109.47534 * 59.99520 * 1 2 3 24 24 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46993 * 239.99869 * 2 1 3 26 26 H 1.09004 * 109.47298 * 120.00283 * 2 1 3 27 27 H 1.09001 * 109.46832 * 60.00325 * 3 2 1 28 28 H 1.08993 * 109.47194 * 299.99846 * 3 2 1 29 29 H 1.09001 * 109.46801 * 300.00272 * 4 3 2 30 30 H 1.09001 * 109.46998 * 59.99868 * 4 3 2 31 31 H 1.08996 * 109.46952 * 300.00302 * 5 4 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 5 4 3 33 33 H 0.96698 * 114.00145 * 299.99621 * 8 6 5 34 34 H 1.08999 * 109.47430 * 305.00264 * 9 6 5 35 35 H 1.09003 * 109.47599 * 65.00527 * 9 6 5 36 36 H 1.08999 * 113.47270 * 336.06145 * 11 10 9 37 37 H 1.08997 * 113.47639 * 106.52607 * 11 10 9 38 38 H 1.08998 * 114.17357 * 272.37283 * 12 11 10 39 39 H 0.97004 * 120.00203 * 180.02562 * 16 15 13 40 40 H 1.09001 * 113.47534 * 253.46625 * 21 10 9 41 41 H 1.08992 * 113.47651 * 23.87742 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8849 0.0000 7 1 5.9733 2.2958 -0.8422 8 8 6.0864 2.3150 1.2207 9 6 6.1200 4.3219 -0.1251 10 7 7.5840 4.3133 -0.2456 11 6 8.2238 4.4855 1.0721 12 6 9.2336 5.4242 0.3970 13 6 9.5902 6.6415 1.2107 14 1 9.0555 7.5676 1.0597 15 6 10.5992 6.5730 2.1478 16 7 11.2501 5.4452 2.3320 17 14 11.0417 8.0821 3.1558 18 1 10.2280 8.1039 4.3978 19 1 12.4833 8.0359 3.5094 20 1 10.7658 9.3063 2.3617 21 6 8.0927 5.6501 -0.6050 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6766 1.9562 0.8900 28 1 1.6767 1.9563 -0.8899 29 1 3.9337 0.9284 0.8891 30 1 3.9330 0.9287 -0.8909 31 1 3.7163 3.3993 -0.8895 32 1 3.7171 3.3982 0.8905 33 1 5.8011 2.7890 2.0138 34 1 5.6853 4.7860 -1.0104 35 1 5.8317 4.8883 0.7605 36 1 7.5869 4.9853 1.8019 37 1 8.6728 3.5711 1.4596 38 1 10.1026 4.9175 -0.0228 39 1 11.9598 5.3969 2.9915 40 1 8.4307 5.7226 -1.6387 41 1 7.4205 6.4606 -0.3236 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253520948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:59 Heat of formation + Delta-G solvation = -71.197048 kcal Electronic energy + Delta-G solvation = -17315.214839 eV Core-core repulsion = 14615.020678 eV Total energy + Delta-G solvation = -2700.194161 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.81615 -38.62462 -36.54280 -34.72927 -33.33888 -31.71582 -29.09213 -27.13621 -26.50372 -24.84997 -22.73345 -22.13044 -21.70556 -20.42686 -18.67608 -17.31288 -17.12471 -16.61121 -16.34490 -16.18677 -15.61209 -15.40377 -14.71110 -14.33282 -14.23727 -13.91560 -13.73636 -13.37907 -13.18349 -12.86795 -12.73527 -12.71137 -12.40195 -12.15026 -11.99410 -11.82355 -11.71615 -11.68853 -11.57980 -11.34224 -11.17114 -10.86952 -10.61509 -10.43006 -9.63110 -8.15011 -6.27196 1.42218 1.43147 1.53969 2.42096 3.13819 3.18769 3.58433 3.82300 4.02518 4.07384 4.13042 4.18740 4.26102 4.37192 4.41381 4.49951 4.56438 4.68656 4.72204 4.77123 4.81132 4.91092 4.94161 4.98710 4.99710 5.07824 5.13288 5.25533 5.26808 5.31131 5.39358 5.48617 5.54761 5.54858 5.61778 5.84730 6.29273 6.42969 6.82565 6.88086 7.41415 8.94835 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.053188 B = 0.003575 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.307666 B = 7830.493444 C = 7923.083038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.115 4.115 4 C -0.112 4.112 5 C -0.139 4.139 6 C 0.121 3.879 7 H 0.087 0.913 8 O -0.573 6.573 9 C -0.012 4.012 10 N -0.482 5.482 11 C 0.032 3.968 12 C 0.017 3.983 13 C -0.530 4.530 14 H 0.060 0.940 15 C 0.012 3.988 16 N -0.923 5.923 17 Si 0.960 3.040 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.264 1.264 21 C 0.007 3.993 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.377 0.623 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.040 0.960 38 H 0.025 0.975 39 H 0.263 0.737 40 H 0.071 0.929 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.468 -5.936 -3.807 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.153 4.153 4 C -0.149 4.149 5 C -0.177 4.177 6 C 0.061 3.939 7 H 0.105 0.895 8 O -0.379 6.379 9 C -0.141 4.141 10 N -0.204 5.204 11 C -0.097 4.097 12 C -0.003 4.003 13 C -0.569 4.569 14 H 0.078 0.922 15 C -0.187 4.187 16 N -0.562 5.562 17 Si 0.785 3.215 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.189 1.189 21 C -0.122 4.122 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.225 0.775 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.950 -7.038 -4.556 20.722 hybrid contribution 0.152 1.612 1.450 2.174 sum -18.799 -5.426 -3.106 19.811 Atomic orbital electron populations 1.21772 0.95274 1.01905 1.01967 1.21549 0.96359 0.96772 1.01834 1.21595 0.94507 0.96994 1.02185 1.21477 0.95690 0.95887 1.01873 1.22197 0.93936 0.98133 1.03456 1.21872 0.92913 0.91955 0.87128 0.89507 1.86583 1.77914 1.57180 1.16242 1.23461 0.90417 0.98503 1.01741 1.68747 1.07067 1.26768 1.17803 1.23667 0.97049 0.98104 0.90915 1.20077 0.92150 0.94591 0.93434 1.21369 1.18277 0.97057 1.20160 0.92175 1.25880 0.95674 0.98833 0.98318 1.70113 1.23644 1.27458 1.34969 0.85527 0.77296 0.79723 0.78938 1.19885 1.20996 1.18869 1.23850 0.97669 0.90696 0.99940 0.92671 0.92476 0.92403 0.92186 0.92469 0.91967 0.91627 0.92553 0.92497 0.89992 0.91066 0.77511 0.89374 0.93809 0.93219 0.94178 0.95696 0.92852 0.91032 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.13 -1.89 5.93 30.59 0.18 -1.71 16 3 C -0.12 -1.80 5.21 30.60 0.16 -1.64 16 4 C -0.11 -2.13 5.11 30.60 0.16 -1.97 16 5 C -0.14 -2.76 4.89 30.59 0.15 -2.61 16 6 C 0.12 3.31 3.21 30.59 0.10 3.40 16 7 H 0.09 2.60 8.14 -2.38 -0.02 2.59 16 8 O -0.57 -17.91 12.21 -148.98 -1.82 -19.73 16 9 C -0.01 -0.38 4.53 86.30 0.39 0.02 16 10 N -0.48 -19.57 6.31 -927.81 -5.85 -25.42 16 11 C 0.03 1.51 6.66 83.58 0.56 2.07 16 12 C 0.02 0.86 3.76 -11.19 -0.04 0.82 16 13 C -0.53 -29.35 8.83 25.60 0.23 -29.12 16 14 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 15 C 0.01 0.68 5.46 84.65 0.46 1.14 16 16 N -0.92 -55.17 13.26 21.45 0.28 -54.89 16 17 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 21 C 0.01 0.30 7.25 83.58 0.61 0.91 16 22 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.22 7.82 -2.39 -0.02 1.20 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.38 9.71 9.05 -74.06 -0.67 9.04 16 34 H 0.09 2.39 8.08 -2.39 -0.02 2.37 16 35 H 0.04 1.35 7.30 -2.39 -0.02 1.33 16 36 H 0.05 2.30 7.38 -2.39 -0.02 2.29 16 37 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.02 1.47 8.11 -2.39 -0.02 1.45 16 39 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 40 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.06 2.49 7.87 -2.39 -0.02 2.47 16 Total: -1.00 -62.85 330.97 -1.41 -64.26 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.29 Total: 20.24 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 3.66 Total: -29.89 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -5.57 Total: -80.31 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -1.82 Total: -19.73 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -62.85 -1.41 -64.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253520948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.933 kcal (2) G-P(sol) polarization free energy of solvation -62.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds