Wall clock time and date at job start Sun Mar 29 2020 23:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47004 * 2 1 4 4 C 1.53001 * 109.47050 * 119.99509 * 2 1 3 5 5 H 1.08999 * 109.47164 * 60.00181 * 4 2 1 6 6 O 1.42903 * 109.47171 * 299.99915 * 4 2 1 7 7 C 1.53003 * 109.47376 * 180.02562 * 4 2 1 8 8 N 1.46900 * 109.47407 * 184.99739 * 7 4 2 9 9 C 1.46902 * 110.99888 * 179.97438 * 8 7 4 10 10 H 1.08998 * 109.41108 * 35.00648 * 9 8 7 11 11 C 1.52960 * 109.40726 * 154.86159 * 9 8 7 12 12 C 1.53241 * 109.39929 * 183.70490 * 11 9 8 13 13 C 1.51266 * 108.53539 * 305.36840 * 12 11 9 14 14 C 1.37872 * 120.85288 * 231.32253 * 13 12 11 15 15 N 1.31518 * 119.99857 * 0.02562 * 14 13 12 16 16 Si 1.86798 * 120.00326 * 180.02562 * 14 13 12 17 17 H 1.48495 * 109.47069 * 90.00251 * 16 14 13 18 18 H 1.48499 * 109.47521 * 210.00510 * 16 14 13 19 19 H 1.48500 * 109.47029 * 330.00282 * 16 14 13 20 20 C 1.51276 * 118.29826 * 51.35428 * 13 12 11 21 21 C 1.52957 * 109.41372 * 275.13988 * 9 8 7 22 22 H 1.08997 * 109.47549 * 300.00271 * 1 2 3 23 23 H 1.08997 * 109.46932 * 60.00615 * 1 2 3 24 24 H 1.09009 * 109.46962 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47549 * 239.99729 * 2 1 3 26 26 H 1.09001 * 109.47666 * 59.99505 * 3 2 1 27 27 H 1.08999 * 109.47493 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46619 * 299.99765 * 3 2 1 29 29 H 0.96700 * 114.00311 * 300.00378 * 6 4 2 30 30 H 1.09005 * 109.46682 * 304.99749 * 7 4 2 31 31 H 1.08999 * 109.47221 * 64.99915 * 7 4 2 32 32 H 1.00897 * 111.00248 * 303.95482 * 8 7 4 33 33 H 1.08997 * 109.48426 * 303.67758 * 11 9 8 34 34 H 1.08996 * 109.48476 * 63.71557 * 11 9 8 35 35 H 1.08997 * 109.62174 * 65.08635 * 12 11 9 36 36 H 1.09001 * 109.62391 * 185.65739 * 12 11 9 37 37 H 0.97000 * 119.99921 * 180.02562 * 15 14 13 38 38 H 1.09000 * 109.62660 * 68.36299 * 20 13 12 39 39 H 1.09003 * 109.62149 * 188.93645 * 20 13 12 40 40 H 1.08995 * 109.48435 * 296.28108 * 21 9 8 41 41 H 1.09003 * 109.48395 * 56.32084 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6766 -1.7488 1.2494 6 8 1.5636 -0.0474 2.4161 7 6 3.5700 -0.7206 1.2497 8 7 4.0597 -1.5149 2.3843 9 6 5.5282 -1.5373 2.4164 10 1 5.9127 -0.5770 2.0729 11 6 6.0015 -1.7917 3.8485 12 6 7.5315 -1.7232 3.8986 13 6 8.0899 -2.6888 2.8768 14 6 9.0473 -3.6160 3.2295 15 7 9.4864 -3.6692 4.4681 16 14 9.7210 -4.7966 1.9483 17 1 10.9066 -4.1903 1.2913 18 1 10.1157 -6.0683 2.6058 19 1 8.6760 -5.0700 0.9291 20 6 7.5713 -2.6105 1.4579 21 6 6.0399 -2.6480 1.4977 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.6766 1.9564 0.8899 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9562 -0.8901 29 1 1.8489 0.8742 2.4821 30 1 3.9336 -1.1548 0.3184 31 1 3.9330 0.3032 1.3394 32 1 3.6839 -1.1711 3.2553 33 1 5.5819 -1.0339 4.5101 34 1 5.6709 -2.7791 4.1706 35 1 7.8605 -0.7109 3.6639 36 1 7.8781 -2.0023 4.8937 37 1 10.1603 -4.3213 4.7161 38 1 7.9041 -1.6804 0.9972 39 1 7.9434 -3.4598 0.8848 40 1 5.7085 -3.6148 1.8766 41 1 5.6474 -2.4977 0.4919 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253780471.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:29 Heat of formation + Delta-G solvation = -84.188471 kcal Electronic energy + Delta-G solvation = -18103.531019 eV Core-core repulsion = 15402.773507 eV Total energy + Delta-G solvation = -2700.757512 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.95232 -37.19619 -33.94758 -33.87149 -31.54957 -29.68433 -28.31587 -27.40797 -25.94605 -22.81887 -21.42025 -21.12172 -20.14489 -19.07055 -16.68307 -16.13875 -15.80638 -15.45162 -14.69867 -14.43037 -13.98916 -13.49262 -13.35695 -13.02330 -12.60888 -12.51469 -12.34809 -12.16179 -11.99480 -11.79225 -11.37309 -11.28399 -11.05410 -10.86254 -10.75344 -10.58926 -10.44865 -10.04746 -9.93273 -9.75557 -9.41093 -8.83699 -8.59346 -8.41740 -7.86948 -6.05519 -3.95782 3.30121 3.38396 3.39545 4.21756 4.42201 4.51806 4.73547 4.80357 4.94236 5.20592 5.22965 5.38122 5.45545 5.49927 5.65920 5.66062 5.77845 5.87127 5.87918 5.95671 6.00899 6.13438 6.24482 6.29265 6.60086 6.73736 6.85019 6.89497 7.00976 7.11152 7.16687 7.50170 7.58743 7.63964 7.72846 7.79479 7.88634 7.95848 8.44276 9.01689 9.59316 11.04309 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.044913 B = 0.004892 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.282078 B = 5722.399489 C = 6030.598646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C -0.155 4.155 4 C 0.112 3.888 5 H 0.105 0.895 6 O -0.558 6.558 7 C 0.029 3.971 8 N -0.688 5.688 9 C 0.101 3.899 10 H 0.029 0.971 11 C -0.108 4.108 12 C 0.011 3.989 13 C -0.484 4.484 14 C 0.074 3.926 15 N -0.893 5.893 16 Si 0.887 3.113 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.264 1.264 20 C -0.023 4.023 21 C -0.090 4.090 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.367 0.633 30 H 0.076 0.924 31 H 0.028 0.972 32 H 0.339 0.661 33 H 0.026 0.974 34 H 0.057 0.943 35 H 0.000 1.000 36 H 0.057 0.943 37 H 0.263 0.737 38 H 0.013 0.987 39 H 0.034 0.966 40 H 0.056 0.944 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.898 7.736 -7.710 17.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.148 4.148 3 C -0.212 4.212 4 C 0.053 3.947 5 H 0.123 0.877 6 O -0.364 6.364 7 C -0.101 4.101 8 N -0.319 5.319 9 C -0.008 4.008 10 H 0.047 0.953 11 C -0.146 4.146 12 C -0.027 4.027 13 C -0.503 4.503 14 C -0.128 4.128 15 N -0.531 5.531 16 Si 0.715 3.285 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.189 1.189 20 C -0.061 4.061 21 C -0.128 4.128 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.214 0.786 30 H 0.094 0.906 31 H 0.046 0.954 32 H 0.157 0.843 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.019 0.981 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -14.095 6.457 -7.800 17.355 hybrid contribution 0.913 0.756 -0.551 1.307 sum -13.182 7.212 -8.351 17.190 Atomic orbital electron populations 1.21738 0.94602 1.01891 1.01643 1.21784 0.96747 0.96953 0.99302 1.21918 1.01467 0.95976 1.01877 1.22067 0.92364 0.96564 0.83749 0.87680 1.86596 1.76891 1.28627 1.44241 1.22694 0.94884 0.95738 0.96779 1.60551 1.09715 1.55985 1.05679 1.21448 0.84196 0.97319 0.97811 0.95339 1.21804 1.00287 0.99691 0.92850 1.19362 0.89242 0.94941 0.99127 1.20047 1.20624 1.16644 0.92964 1.24851 0.95878 0.96861 0.95207 1.69842 1.29974 1.36100 1.17143 0.86677 0.79223 0.80663 0.81892 1.20532 1.21664 1.18929 1.19857 0.92113 0.96945 0.97178 1.21519 0.97727 0.98007 0.95594 0.92103 0.93079 0.92713 0.90378 0.92649 0.92101 0.92451 0.78588 0.90568 0.95445 0.84256 0.95548 0.92396 0.98123 0.92404 0.92677 0.96911 0.94768 0.92537 0.95528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.05 37.16 0.34 -0.91 16 2 C -0.13 -1.20 2.81 -90.62 -0.25 -1.46 16 3 C -0.16 -1.30 8.53 37.16 0.32 -0.98 16 4 C 0.11 1.29 3.01 -26.73 -0.08 1.21 16 5 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 6 O -0.56 -6.56 12.14 -35.23 -0.43 -6.99 16 7 C 0.03 0.39 4.65 -3.82 -0.02 0.38 16 8 N -0.69 -11.48 6.31 -106.77 -0.67 -12.15 16 9 C 0.10 1.99 2.39 -67.75 -0.16 1.83 16 10 H 0.03 0.58 7.80 -51.93 -0.40 0.17 16 11 C -0.11 -2.35 5.24 -26.63 -0.14 -2.49 16 12 C 0.01 0.28 5.97 -27.48 -0.16 0.12 16 13 C -0.48 -12.99 5.51 -98.92 -0.55 -13.54 16 14 C 0.07 2.06 5.46 -17.82 -0.10 1.97 16 15 N -0.89 -26.11 12.73 55.43 0.71 -25.41 16 16 Si 0.89 21.42 27.53 -169.99 -4.68 16.74 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.26 -6.18 6.10 56.52 0.34 -5.83 16 20 C -0.02 -0.55 5.60 -27.48 -0.15 -0.70 16 21 C -0.09 -1.92 5.45 -26.63 -0.15 -2.06 16 22 H 0.06 0.56 7.68 -51.93 -0.40 0.16 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.42 6.78 -51.93 -0.35 0.07 16 27 H 0.06 0.55 6.54 -51.93 -0.34 0.21 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.37 3.33 7.33 45.56 0.33 3.66 16 30 H 0.08 1.08 7.36 -51.93 -0.38 0.69 16 31 H 0.03 0.36 6.62 -51.93 -0.34 0.02 16 32 H 0.34 5.51 7.85 -39.29 -0.31 5.20 16 33 H 0.03 0.51 8.05 -51.93 -0.42 0.10 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 36 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.03 0.81 4.59 -51.93 -0.24 0.57 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.03 0.51 7.36 -51.93 -0.38 0.13 16 LS Contribution 309.33 15.07 4.66 4.66 Total: -1.00 -28.69 309.33 -8.12 -36.81 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.60 Total: 2.98 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -1.11 Total: -16.64 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.03 Total: -37.56 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.43 Total: -6.99 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.68 Total: 16.74 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.69 -8.12 -36.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253780471.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.378 kcal (2) G-P(sol) polarization free energy of solvation -28.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds