Wall clock time and date at job start Sun Mar 29 2020 23:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47359 * 2 1 4 4 C 1.53002 * 109.47005 * 120.00499 * 2 1 3 5 5 H 1.09002 * 109.47070 * 184.99640 * 4 2 1 6 6 O 1.42903 * 109.46923 * 304.99805 * 4 2 1 7 7 C 1.53000 * 109.47233 * 64.99266 * 4 2 1 8 8 N 1.46905 * 109.47123 * 180.02562 * 7 4 2 9 9 C 1.46902 * 110.99871 * 180.02562 * 8 7 4 10 10 H 1.08991 * 109.41259 * 324.99990 * 9 8 7 11 11 C 1.52957 * 109.41067 * 84.86343 * 9 8 7 12 12 C 1.53245 * 109.39440 * 183.77473 * 11 9 8 13 13 C 1.51267 * 108.48124 * 305.26245 * 12 11 9 14 14 C 1.37881 * 120.84941 * 231.41177 * 13 12 11 15 15 N 1.31517 * 120.00225 * 179.97438 * 14 13 12 16 16 Si 1.86797 * 119.99940 * 359.97438 * 14 13 12 17 17 H 1.48498 * 109.47475 * 59.99799 * 16 14 13 18 18 H 1.48500 * 109.47485 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47105 * 299.99671 * 16 14 13 20 20 C 1.51263 * 118.30264 * 51.39152 * 13 12 11 21 21 C 1.52958 * 109.41141 * 205.14251 * 9 8 7 22 22 H 1.09001 * 109.47027 * 59.99536 * 1 2 3 23 23 H 1.08997 * 109.47805 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46952 * 300.00522 * 1 2 3 25 25 H 1.09008 * 109.46877 * 239.99971 * 2 1 3 26 26 H 1.09006 * 109.46918 * 179.97438 * 3 2 1 27 27 H 1.08988 * 109.47178 * 299.99622 * 3 2 1 28 28 H 1.08997 * 109.47151 * 60.00624 * 3 2 1 29 29 H 0.96700 * 114.00234 * 59.99815 * 6 4 2 30 30 H 1.08992 * 109.47399 * 300.00166 * 7 4 2 31 31 H 1.09004 * 109.46724 * 60.00652 * 7 4 2 32 32 H 1.00896 * 110.99513 * 56.04480 * 8 7 4 33 33 H 1.08998 * 109.48144 * 303.67456 * 11 9 8 34 34 H 1.08994 * 109.48831 * 63.72574 * 11 9 8 35 35 H 1.08998 * 109.61462 * 185.58671 * 12 11 9 36 36 H 1.09001 * 109.69170 * 64.97997 * 12 11 9 37 37 H 0.96991 * 120.00027 * 180.02562 * 15 14 13 38 38 H 1.08998 * 109.62680 * 188.93845 * 20 13 12 39 39 H 1.09000 * 109.63011 * 68.36697 * 20 13 12 40 40 H 1.09001 * 109.48169 * 296.27697 * 21 9 8 41 41 H 1.09004 * 109.48221 * 56.30008 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1263 -0.6445 1.2951 6 8 1.4702 -0.1190 2.4131 7 6 1.6350 -2.1955 1.1879 8 7 2.1242 -2.8880 2.3876 9 6 1.7536 -4.3093 2.3630 10 1 0.7763 -4.4207 1.8934 11 6 2.7950 -5.0924 1.5618 12 6 2.3593 -6.5578 1.4563 13 6 2.1205 -7.0888 2.8525 14 6 2.7112 -8.2613 3.2736 15 7 2.4925 -8.7074 4.4913 16 14 3.8221 -9.2162 2.1146 17 1 4.9679 -8.3621 1.7112 18 1 4.3288 -10.4306 2.8029 19 1 3.0531 -9.6150 0.9083 20 6 1.2176 -6.3002 3.7750 21 6 1.6936 -4.8439 3.7948 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8901 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9562 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 0.5040 -0.1509 2.4395 30 1 0.5488 -2.2724 1.1420 31 1 2.0697 -2.6551 0.3002 32 1 1.7864 -2.4404 3.2264 33 1 2.8799 -4.6666 0.5620 34 1 3.7600 -5.0343 2.0652 35 1 3.1445 -7.1391 0.9729 36 1 1.4391 -6.6266 0.8762 37 1 2.9083 -9.5321 4.7877 38 1 1.2691 -6.7160 4.7812 39 1 0.1916 -6.3451 3.4095 40 1 2.6853 -4.7917 4.2442 41 1 0.9977 -4.2416 4.3789 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253780473.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:33 Heat of formation + Delta-G solvation = -85.830103 kcal Electronic energy + Delta-G solvation = -18101.367057 eV Core-core repulsion = 15400.538359 eV Total energy + Delta-G solvation = -2700.828698 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.95829 -37.20007 -33.96192 -33.85100 -31.55366 -29.69294 -28.31733 -27.44059 -25.96374 -22.79125 -21.42386 -21.11159 -20.16555 -19.07859 -16.69290 -16.12489 -15.81084 -15.47713 -14.69743 -14.42162 -13.98211 -13.54427 -13.34018 -13.00065 -12.62477 -12.46930 -12.29910 -12.18848 -11.97218 -11.77730 -11.35613 -11.30183 -11.07261 -10.87184 -10.73033 -10.58878 -10.47562 -10.06317 -9.95624 -9.75146 -9.58318 -8.85627 -8.61104 -8.43034 -7.86929 -6.06187 -3.96354 3.32006 3.38245 3.39941 4.20351 4.42338 4.52373 4.73288 4.79850 4.94089 5.19382 5.22564 5.36956 5.45274 5.49173 5.65061 5.66114 5.77934 5.85850 5.86922 5.94822 5.99817 6.13048 6.23910 6.28506 6.58866 6.71723 6.83519 6.88658 6.99548 7.09536 7.11702 7.48717 7.58111 7.63996 7.71612 7.79065 7.88399 7.95921 8.43541 9.00850 9.58841 11.03841 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.045337 B = 0.004878 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.452061 B = 5738.254566 C = 6036.738625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.129 4.129 3 C -0.142 4.142 4 C 0.112 3.888 5 H 0.105 0.895 6 O -0.558 6.558 7 C 0.028 3.972 8 N -0.687 5.687 9 C 0.101 3.899 10 H 0.029 0.971 11 C -0.091 4.091 12 C -0.012 4.012 13 C -0.486 4.486 14 C 0.075 3.925 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.274 1.274 18 H -0.292 1.292 19 H -0.276 1.276 20 C 0.012 3.988 21 C -0.108 4.108 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.367 0.633 30 H 0.027 0.973 31 H 0.076 0.924 32 H 0.339 0.661 33 H 0.027 0.973 34 H 0.057 0.943 35 H 0.024 0.976 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.058 0.942 39 H 0.000 1.000 40 H 0.057 0.943 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 15.658 -7.765 17.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.199 4.199 4 C 0.053 3.947 5 H 0.122 0.878 6 O -0.363 6.363 7 C -0.102 4.102 8 N -0.319 5.319 9 C -0.007 4.007 10 H 0.047 0.953 11 C -0.130 4.130 12 C -0.050 4.050 13 C -0.505 4.505 14 C -0.127 4.127 15 N -0.530 5.530 16 Si 0.720 3.280 17 H -0.199 1.199 18 H -0.219 1.219 19 H -0.201 1.201 20 C -0.026 4.026 21 C -0.146 4.146 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.214 0.786 30 H 0.045 0.955 31 H 0.094 0.906 32 H 0.158 0.842 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.019 0.981 40 H 0.076 0.924 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.700 15.504 -7.743 17.413 hybrid contribution -0.877 -0.670 -0.665 1.289 sum -2.577 14.835 -8.408 17.245 Atomic orbital electron populations 1.21914 0.95277 1.02120 1.01981 1.21782 0.96342 0.97363 0.99310 1.21750 1.00978 0.95517 1.01678 1.22060 0.98783 0.89980 0.83854 0.87761 1.86597 1.24793 1.81553 1.43348 1.22689 0.97276 0.94373 0.95857 1.60519 1.64195 1.03361 1.03799 1.21439 0.96219 0.85224 0.97867 0.95312 1.21535 0.98513 0.96540 0.96379 1.19654 0.95834 0.92501 0.97043 1.20025 1.28082 1.06135 0.96297 1.24841 0.96169 0.96718 0.94992 1.69823 1.44097 1.22081 1.16985 0.86651 0.81345 0.79112 0.80919 1.19944 1.21889 1.20132 1.19354 0.94207 0.89911 0.99151 1.21806 1.00341 0.99243 0.93253 0.92404 0.92166 0.92503 0.90406 0.92706 0.93053 0.92117 0.78576 0.95475 0.90557 0.84203 0.95456 0.92467 0.95778 0.96765 0.92583 0.92381 0.98116 0.92381 0.95532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 8.52 37.16 0.32 -0.98 16 2 C -0.13 -1.20 2.75 -90.62 -0.25 -1.45 16 3 C -0.14 -1.24 9.09 37.16 0.34 -0.90 16 4 C 0.11 1.29 2.99 -26.73 -0.08 1.21 16 5 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 6 O -0.56 -6.58 12.11 -35.23 -0.43 -7.01 16 7 C 0.03 0.38 4.94 -3.82 -0.02 0.36 16 8 N -0.69 -11.43 6.31 -106.77 -0.67 -12.11 16 9 C 0.10 1.99 2.39 -67.76 -0.16 1.83 16 10 H 0.03 0.58 7.79 -51.93 -0.40 0.18 16 11 C -0.09 -1.94 5.45 -26.63 -0.15 -2.08 16 12 C -0.01 -0.29 5.60 -27.48 -0.15 -0.45 16 13 C -0.49 -13.08 5.51 -98.93 -0.55 -13.62 16 14 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 15 N -0.89 -26.10 12.73 55.43 0.71 -25.39 16 16 Si 0.89 21.70 26.80 -169.99 -4.56 17.14 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.01 0.30 5.97 -27.49 -0.16 0.13 16 21 C -0.11 -2.35 5.24 -26.64 -0.14 -2.49 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 24 H 0.06 0.43 6.72 -51.93 -0.35 0.08 16 25 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.39 8.14 -51.94 -0.42 -0.03 16 28 H 0.06 0.56 7.82 -51.93 -0.41 0.15 16 29 H 0.37 3.35 7.19 45.56 0.33 3.68 16 30 H 0.03 0.35 6.48 -51.93 -0.34 0.02 16 31 H 0.08 1.08 7.37 -51.93 -0.38 0.69 16 32 H 0.34 5.48 7.68 -39.29 -0.30 5.18 16 33 H 0.03 0.52 7.36 -51.93 -0.38 0.14 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.02 0.57 5.17 -51.93 -0.27 0.30 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 39 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.03 0.51 8.05 -51.93 -0.42 0.10 16 LS Contribution 310.04 15.07 4.67 4.67 Total: -1.00 -28.72 310.04 -7.95 -36.67 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.57 Total: 2.45 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -1.10 Total: -16.43 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.03 Total: -37.50 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.43 Total: -7.01 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.56 Total: 17.14 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.72 -7.95 -36.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253780473.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.160 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds