Wall clock time and date at job start Sun Mar 29 2020 22:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46815 * 2 1 4 4 C 1.52996 * 109.46575 * 119.99822 * 2 1 3 5 5 H 1.09000 * 109.47701 * 54.34538 * 4 2 1 6 6 O 1.42900 * 109.47733 * 294.33927 * 4 2 1 7 7 C 1.53005 * 109.46684 * 174.34292 * 4 2 1 8 8 N 1.46905 * 109.46927 * 181.39266 * 7 4 2 9 9 C 1.46909 * 110.99685 * 181.50053 * 8 7 4 10 10 C 1.50703 * 110.01632 * 305.79253 * 9 8 7 11 11 H 1.07995 * 120.00045 * 119.54029 * 10 9 8 12 12 C 1.37882 * 119.99673 * 299.53916 * 10 9 8 13 13 N 1.31510 * 119.99610 * 173.56820 * 12 10 9 14 14 Si 1.86798 * 119.99967 * 353.84183 * 12 10 9 15 15 H 1.48503 * 109.46930 * 272.89526 * 14 12 10 16 16 H 1.48493 * 109.47194 * 32.89965 * 14 12 10 17 17 H 1.48502 * 109.46876 * 152.90119 * 14 12 10 18 18 C 1.54263 * 110.03055 * 67.18239 * 9 8 7 19 19 C 1.54968 * 104.15961 * 95.75376 * 18 9 8 20 20 C 1.54884 * 102.77658 * 37.88859 * 19 18 9 21 21 C 1.53873 * 110.02945 * 184.39772 * 9 8 7 22 22 H 1.09004 * 109.47237 * 300.00088 * 1 2 3 23 23 H 1.09005 * 109.46996 * 59.99588 * 1 2 3 24 24 H 1.08997 * 109.47279 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47182 * 239.99826 * 2 1 3 26 26 H 1.09009 * 109.46663 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47502 * 299.99827 * 3 2 1 28 28 H 1.09004 * 109.47290 * 59.99944 * 3 2 1 29 29 H 0.96702 * 113.99406 * 300.00524 * 6 4 2 30 30 H 1.08996 * 109.47376 * 61.38508 * 7 4 2 31 31 H 1.09004 * 109.47042 * 301.38425 * 7 4 2 32 32 H 1.00894 * 110.99639 * 305.44625 * 8 7 4 33 33 H 0.97001 * 120.00100 * 180.02562 * 13 12 10 34 34 H 1.09003 * 110.48775 * 214.39701 * 18 9 8 35 35 H 1.09003 * 110.48999 * 337.04259 * 18 9 8 36 36 H 1.08993 * 110.71941 * 279.57157 * 19 18 9 37 37 H 1.09001 * 110.76564 * 156.21941 * 19 18 9 38 38 H 1.08997 * 110.48761 * 203.40968 * 20 19 18 39 39 H 1.09004 * 110.49190 * 80.76074 * 20 19 18 40 40 H 1.08998 * 110.03504 * 359.95626 * 21 9 8 41 41 H 1.09008 * 110.02815 * 121.37970 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5962 -1.7155 1.3014 6 8 1.6752 0.0247 2.4123 7 6 3.5633 -0.8456 1.1802 8 7 4.0498 -1.5674 2.3636 9 6 5.5149 -1.6750 2.3492 10 6 5.9740 -2.2924 1.0534 11 1 6.6278 -1.7408 0.3942 12 6 5.5594 -3.5617 0.7095 13 7 5.8548 -4.0516 -0.4746 14 14 4.5716 -4.5823 1.9228 15 1 5.4982 -5.3281 2.8119 16 1 3.7145 -3.6868 2.7404 17 1 3.7169 -5.5434 1.1805 18 6 6.1489 -0.2795 2.5235 19 6 6.4429 -0.1837 4.0420 20 6 6.9011 -1.6208 4.3935 21 6 5.9924 -2.5275 3.5378 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 2.0360 0.9217 2.4333 30 1 4.0082 0.1491 1.1529 31 1 3.8427 -1.3934 0.2802 32 1 3.7279 -1.1279 3.2128 33 1 5.5628 -4.9444 -0.7167 34 1 7.0734 -0.2062 1.9507 35 1 5.4483 0.4985 2.2199 36 1 5.5406 0.0799 4.5936 37 1 7.2397 0.5342 4.2367 38 1 6.7494 -1.8209 5.4541 39 1 7.9472 -1.7648 4.1229 40 1 5.1373 -2.8608 4.1258 41 1 6.5564 -3.3879 3.1774 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253787686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:10 Heat of formation + Delta-G solvation = -64.095526 kcal Electronic energy + Delta-G solvation = -19065.538651 eV Core-core repulsion = 16365.652434 eV Total energy + Delta-G solvation = -2699.886216 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.80013 -37.59398 -33.51456 -33.13771 -31.99062 -28.59830 -27.85758 -27.12255 -26.09661 -23.61003 -21.95812 -20.08471 -19.70235 -18.54355 -16.36979 -16.05218 -15.51417 -15.29979 -14.92313 -14.37646 -13.93072 -13.44906 -13.10738 -12.83087 -12.63724 -12.43967 -12.22477 -11.98234 -11.73494 -11.48543 -11.05474 -11.00676 -10.72687 -10.59443 -10.48059 -10.34609 -10.17485 -10.01756 -9.81642 -9.73326 -9.50293 -9.21504 -8.96077 -8.39748 -6.95204 -5.98330 -4.03123 3.51746 3.62830 3.91227 4.67802 4.71520 4.95698 5.12854 5.17207 5.27631 5.36596 5.53819 5.56359 5.63664 5.74850 5.78770 5.90256 5.93840 6.05261 6.10080 6.19901 6.23544 6.25925 6.32694 6.45566 6.46884 6.49427 6.52860 6.62442 6.74063 6.77377 6.92693 7.02629 7.03978 7.32824 7.75480 7.98340 8.14079 8.55079 8.76104 9.04139 9.68977 11.11611 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019990 B = 0.009997 C = 0.008023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.374344 B = 2800.169758 C = 3489.295848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C -0.152 4.152 4 C 0.108 3.892 5 H 0.099 0.901 6 O -0.563 6.563 7 C 0.041 3.959 8 N -0.670 5.670 9 C 0.210 3.790 10 C -0.510 4.510 11 H 0.067 0.933 12 C 0.086 3.914 13 N -0.902 5.902 14 Si 0.869 3.131 15 H -0.296 1.296 16 H -0.203 1.203 17 H -0.311 1.311 18 C -0.138 4.138 19 C -0.125 4.125 20 C -0.119 4.119 21 C -0.124 4.124 22 H 0.057 0.943 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.363 0.637 30 H 0.021 0.979 31 H 0.096 0.904 32 H 0.314 0.686 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.243 9.204 4.772 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.209 4.209 4 C 0.049 3.951 5 H 0.117 0.883 6 O -0.368 6.368 7 C -0.088 4.088 8 N -0.300 5.300 9 C 0.121 3.879 10 C -0.548 4.548 11 H 0.085 0.915 12 C -0.118 4.118 13 N -0.539 5.539 14 Si 0.697 3.303 15 H -0.224 1.224 16 H -0.125 1.125 17 H -0.239 1.239 18 C -0.177 4.177 19 C -0.162 4.162 20 C -0.157 4.157 21 C -0.162 4.162 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.210 0.790 30 H 0.039 0.961 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.688 7.886 4.516 11.283 hybrid contribution 0.239 0.650 0.377 0.788 sum -6.449 8.536 4.893 11.764 Atomic orbital electron populations 1.21751 0.95156 1.01618 1.01245 1.21761 0.96164 0.96915 0.99926 1.21875 1.01625 0.96040 1.01375 1.22168 0.95147 0.94574 0.83215 0.88283 1.86555 1.76983 1.29411 1.43850 1.22474 0.92051 0.96575 0.97714 1.61206 1.12391 1.53508 1.02919 1.19504 0.83401 0.90158 0.94855 1.20786 1.30375 1.00510 1.03083 0.91452 1.24954 0.94288 0.97705 0.94830 1.69971 1.46573 1.17225 1.20156 0.87217 0.81407 0.79252 0.82413 1.22395 1.12513 1.23935 1.23010 1.00901 0.99593 0.94226 1.22492 0.99541 0.96600 0.97616 1.22306 0.99785 0.95362 0.98273 1.22587 0.98034 0.98990 0.96583 0.92414 0.93321 0.92889 0.90189 0.91967 0.92774 0.92886 0.79040 0.96140 0.88613 0.86855 0.92969 0.91852 0.93408 0.92659 0.93077 0.93202 0.92197 0.92928 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.09 37.16 0.34 -1.39 16 2 C -0.13 -1.76 2.75 -90.62 -0.25 -2.01 16 3 C -0.15 -1.82 8.52 37.16 0.32 -1.50 16 4 C 0.11 1.74 2.97 -26.73 -0.08 1.66 16 5 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 6 O -0.56 -8.50 12.15 -35.23 -0.43 -8.93 16 7 C 0.04 0.78 4.51 -3.82 -0.02 0.76 16 8 N -0.67 -13.73 3.19 -99.99 -0.32 -14.05 16 9 C 0.21 4.60 0.38 -131.63 -0.05 4.55 16 10 C -0.51 -13.65 6.91 -34.44 -0.24 -13.89 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.09 2.42 5.27 -17.82 -0.09 2.32 16 13 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 14 Si 0.87 21.96 23.82 -169.99 -4.05 17.92 16 15 H -0.30 -7.56 7.05 56.52 0.40 -7.16 16 16 H -0.20 -4.84 5.07 56.52 0.29 -4.56 16 17 H -0.31 -8.19 7.11 56.52 0.40 -7.79 16 18 C -0.14 -2.65 5.79 -25.03 -0.15 -2.80 16 19 C -0.12 -2.06 6.91 -24.70 -0.17 -2.23 16 20 C -0.12 -2.10 6.83 -25.07 -0.17 -2.27 16 21 C -0.12 -2.61 4.18 -25.61 -0.11 -2.72 16 22 H 0.06 0.71 7.84 -51.93 -0.41 0.30 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.06 0.80 6.62 -51.92 -0.34 0.46 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.56 6.71 -51.93 -0.35 0.22 16 29 H 0.36 4.45 7.18 45.56 0.33 4.78 16 30 H 0.02 0.37 4.84 -51.93 -0.25 0.12 16 31 H 0.10 2.18 6.94 -51.93 -0.36 1.82 16 32 H 0.31 6.03 8.13 -39.30 -0.32 5.71 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.06 1.30 7.69 -51.93 -0.40 0.90 16 35 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 1.09 6.88 -51.93 -0.36 0.73 16 41 H 0.07 1.62 6.00 -51.92 -0.31 1.31 16 LS Contribution 300.86 15.07 4.53 4.53 Total: -1.00 -29.33 300.86 -6.72 -36.05 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.56 Total: 10.60 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -0.67 Total: -19.53 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.45 Total: -40.63 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.43 Total: -8.93 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.05 Total: 17.92 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.33 -6.72 -36.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253787686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.050 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds