Wall clock time and date at job start Sun Mar 29 2020 22:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46874 * 2 1 4 4 C 1.53006 * 109.46780 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.46714 * 174.47968 * 4 3 2 6 6 C 1.46902 * 111.00251 * 71.64025 * 5 4 3 7 7 C 1.50701 * 109.47231 * 66.73076 * 6 5 4 8 8 H 1.07998 * 119.99901 * 354.71321 * 7 6 5 9 9 C 1.37873 * 119.99819 * 174.71781 * 7 6 5 10 10 N 1.31513 * 119.99818 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00309 * 359.97438 * 9 7 6 12 12 H 1.48493 * 109.47059 * 90.00092 * 11 9 7 13 13 H 1.48506 * 109.46658 * 330.00124 * 11 9 7 14 14 H 1.48499 * 109.47053 * 210.00325 * 11 9 7 15 15 C 1.46898 * 110.99735 * 195.58956 * 5 4 3 16 16 H 1.08995 * 109.52526 * 300.12945 * 15 5 4 17 17 C 1.53177 * 109.52355 * 179.97438 * 15 5 4 18 18 C 1.53181 * 109.03846 * 183.11573 * 17 15 5 19 19 C 1.53093 * 109.16370 * 56.98389 * 18 17 15 20 20 O 1.42909 * 109.41222 * 302.39493 * 19 18 17 21 21 C 1.42904 * 114.10139 * 61.15342 * 20 19 18 22 22 H 1.09002 * 109.46931 * 60.00474 * 1 2 3 23 23 H 1.08996 * 109.47313 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47495 * 300.00763 * 1 2 3 25 25 H 1.09000 * 109.47617 * 239.99777 * 2 1 3 26 26 H 1.09002 * 109.46931 * 119.99526 * 2 1 3 27 27 H 1.08995 * 109.47832 * 59.99789 * 3 2 1 28 28 H 1.09002 * 109.46955 * 299.99511 * 3 2 1 29 29 H 1.08994 * 109.47452 * 54.47891 * 4 3 2 30 30 H 1.09004 * 109.46930 * 294.47370 * 4 3 2 31 31 H 1.08996 * 109.46623 * 306.73041 * 6 5 4 32 32 H 1.09002 * 109.46856 * 186.73527 * 6 5 4 33 33 H 0.97006 * 120.00368 * 179.97438 * 10 9 7 34 34 H 1.09004 * 109.54670 * 302.98442 * 17 15 5 35 35 H 1.09004 * 109.54256 * 63.16031 * 17 15 5 36 36 H 1.08999 * 109.51973 * 176.88912 * 18 17 15 37 37 H 1.08999 * 109.51825 * 297.07791 * 18 17 15 38 38 H 1.09003 * 109.47935 * 62.36965 * 19 18 17 39 39 H 1.08995 * 109.48431 * 182.40840 * 19 18 17 40 40 H 1.08997 * 109.48074 * 178.85761 * 21 20 19 41 41 H 1.09001 * 109.47791 * 58.82581 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0595 2.8212 -0.1339 6 6 3.8282 3.5836 1.1003 7 6 4.6830 3.0204 2.2063 8 1 5.2681 2.1288 2.0359 9 6 4.7180 3.6435 3.4357 10 7 5.4644 3.1524 4.4008 11 14 3.7065 5.1861 3.7303 12 1 2.3633 4.8078 4.2379 13 1 3.5615 5.9338 2.4554 14 1 4.3908 6.0430 4.7316 15 6 5.4802 2.8415 -0.5067 16 1 6.0654 2.3340 0.2601 17 6 5.9546 4.2922 -0.6369 18 6 7.4143 4.3008 -1.1013 19 6 7.5265 3.5323 -2.4206 20 8 7.0404 2.2010 -2.2376 21 6 5.6671 2.1294 -1.8490 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6766 1.9565 0.8899 28 1 1.6766 1.9563 -0.8901 29 1 3.9330 0.8456 -0.8372 30 1 3.9337 1.0166 0.9345 31 1 2.7774 3.5112 1.3805 32 1 4.0892 4.6291 0.9358 33 1 5.4894 3.5909 5.2657 34 1 5.3364 4.8138 -1.3676 35 1 5.8751 4.7899 0.3296 36 1 7.7432 5.3293 -1.2497 37 1 8.0393 3.8228 -0.3470 38 1 6.9331 4.0340 -3.1851 39 1 8.5699 3.4986 -2.7341 40 1 5.3711 1.0850 -1.7507 41 1 5.0495 2.6127 -2.6060 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254384251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:06 Heat of formation + Delta-G solvation = -61.968612 kcal Electronic energy + Delta-G solvation = -18601.100097 eV Core-core repulsion = 15901.306110 eV Total energy + Delta-G solvation = -2699.793986 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.24758 -36.90712 -34.43374 -32.61486 -32.26515 -29.86022 -28.75440 -26.29322 -24.65223 -23.03765 -22.42260 -21.07359 -19.94527 -19.06120 -16.88759 -16.19153 -15.68575 -15.03559 -14.64901 -14.49675 -14.27010 -13.72923 -13.57588 -13.25465 -12.86015 -12.47978 -12.40598 -12.21510 -11.85578 -11.45348 -11.27348 -11.01333 -10.85094 -10.73387 -10.60394 -10.47315 -10.44451 -10.13543 -9.98224 -9.83218 -9.70216 -9.46115 -8.94204 -8.60017 -7.21450 -6.11358 -4.10514 3.25142 3.33211 3.35860 4.14816 4.37633 4.80125 5.21046 5.23973 5.29196 5.31706 5.36882 5.39683 5.47654 5.59433 5.63424 5.79611 5.85999 5.94071 6.05923 6.09249 6.10999 6.13764 6.20800 6.31890 6.43209 6.44771 6.48940 6.52480 6.77890 6.80814 6.88383 6.94646 6.95863 7.12338 7.47772 7.57603 8.04115 8.12981 8.43975 8.91312 9.51375 11.01609 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.011034 C = 0.006552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.012806 B = 2537.079833 C = 4272.432745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.110 4.110 4 C 0.052 3.948 5 N -0.529 5.529 6 C 0.150 3.850 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.899 5.899 11 Si 0.874 3.126 12 H -0.277 1.277 13 H -0.263 1.263 14 H -0.287 1.287 15 C 0.062 3.938 16 H 0.062 0.938 17 C -0.111 4.111 18 C -0.154 4.154 19 C 0.062 3.938 20 O -0.388 6.388 21 C 0.065 3.935 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.025 0.975 32 H 0.033 0.967 33 H 0.263 0.737 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 -0.737 -11.556 11.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.148 4.148 4 C -0.077 4.077 5 N -0.253 5.253 6 C 0.023 3.977 7 C -0.584 4.584 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.537 5.537 11 Si 0.701 3.299 12 H -0.202 1.202 13 H -0.188 1.188 14 H -0.213 1.213 15 C -0.047 4.047 16 H 0.080 0.920 17 C -0.149 4.149 18 C -0.192 4.192 19 C -0.015 4.015 20 O -0.306 6.306 21 C -0.011 4.011 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.795 -0.639 -11.785 12.129 hybrid contribution -0.189 0.700 1.228 1.426 sum -2.985 0.061 -10.557 10.971 Atomic orbital electron populations 1.21750 0.96396 1.00880 1.01634 1.21491 0.95322 0.97688 1.01605 1.21531 0.95671 0.95484 1.02125 1.22074 0.94679 0.90568 1.00340 1.62469 1.15086 1.12617 1.35143 1.20263 0.96570 0.94321 0.86539 1.21635 1.27595 1.13137 0.96000 0.90807 1.24944 0.94911 0.97122 0.95984 1.69928 1.39656 1.40456 1.03662 0.86874 0.80645 0.83907 0.78466 1.20231 1.18766 1.21343 1.21955 0.90749 0.96219 0.95805 0.92018 1.21587 0.94044 0.96834 1.02398 1.22194 0.98506 1.00360 0.98136 1.22537 0.99018 0.83672 0.96224 1.87888 1.27094 1.26662 1.88913 1.22729 0.81798 1.00952 0.95668 0.93049 0.93331 0.92825 0.92561 0.92106 0.91787 0.92181 0.92665 0.93193 0.95676 0.94952 0.92736 0.92336 0.90133 0.91417 0.91001 0.93667 0.89611 0.89386 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.12 -1.71 5.93 -26.73 -0.16 -1.87 16 3 C -0.11 -1.82 5.15 -26.73 -0.14 -1.95 16 4 C 0.05 0.96 4.69 -3.82 -0.02 0.94 16 5 N -0.53 -10.68 4.54 -227.91 -1.03 -11.71 16 6 C 0.15 3.49 3.58 -4.97 -0.02 3.47 16 7 C -0.54 -14.78 7.94 -34.44 -0.27 -15.06 16 8 H 0.07 2.21 6.17 -52.49 -0.32 1.88 16 9 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 11 Si 0.87 21.16 27.58 -169.99 -4.69 16.48 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.26 -6.11 6.39 56.52 0.36 -5.75 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 15 C 0.06 1.20 1.71 -67.57 -0.12 1.08 16 16 H 0.06 1.42 6.55 -51.93 -0.34 1.08 16 17 C -0.11 -2.02 4.84 -26.55 -0.13 -2.14 16 18 C -0.15 -2.37 6.14 -26.59 -0.16 -2.53 16 19 C 0.06 0.88 6.84 37.21 0.25 1.13 16 20 O -0.39 -6.55 10.77 -35.23 -0.38 -6.93 16 21 C 0.07 1.10 5.88 37.21 0.22 1.31 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 1.17 6.85 -51.93 -0.36 0.81 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.92 5.70 -51.93 -0.30 0.62 16 30 H 0.05 1.08 6.58 -51.93 -0.34 0.74 16 31 H 0.03 0.59 6.26 -51.93 -0.33 0.27 16 32 H 0.03 0.77 5.16 -51.93 -0.27 0.50 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.67 6.53 -51.93 -0.34 1.33 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.09 1.42 6.24 -51.93 -0.32 1.09 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 307.59 15.07 4.64 4.64 Total: -1.00 -29.15 307.59 -8.12 -37.27 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.16 Total: 1.68 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -0.27 Total: -15.08 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.26 Total: -38.05 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.38 Total: -6.93 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.69 Total: 16.48 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.15 -8.12 -37.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254384251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.698 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds