Wall clock time and date at job start Sun Mar 29 2020 22:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46874 * 2 1 4 4 C 1.53006 * 109.46780 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.46714 * 174.47968 * 4 3 2 6 6 C 1.46902 * 111.00251 * 71.64025 * 5 4 3 7 7 C 1.50701 * 109.47231 * 66.73076 * 6 5 4 8 8 H 1.07998 * 119.99901 * 354.71321 * 7 6 5 9 9 C 1.37873 * 119.99819 * 174.71781 * 7 6 5 10 10 N 1.31513 * 119.99818 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00309 * 359.97438 * 9 7 6 12 12 H 1.48493 * 109.47059 * 90.00092 * 11 9 7 13 13 H 1.48506 * 109.46658 * 330.00124 * 11 9 7 14 14 H 1.48499 * 109.47053 * 210.00325 * 11 9 7 15 15 C 1.46898 * 110.99735 * 195.58956 * 5 4 3 16 16 H 1.08995 * 109.52526 * 300.12945 * 15 5 4 17 17 C 1.53177 * 109.52355 * 179.97438 * 15 5 4 18 18 C 1.53181 * 109.03846 * 183.11573 * 17 15 5 19 19 C 1.53093 * 109.16370 * 56.98389 * 18 17 15 20 20 O 1.42909 * 109.41222 * 302.39493 * 19 18 17 21 21 C 1.42904 * 114.10139 * 61.15342 * 20 19 18 22 22 H 1.09002 * 109.46931 * 60.00474 * 1 2 3 23 23 H 1.08996 * 109.47313 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47495 * 300.00763 * 1 2 3 25 25 H 1.09000 * 109.47617 * 239.99777 * 2 1 3 26 26 H 1.09002 * 109.46931 * 119.99526 * 2 1 3 27 27 H 1.08995 * 109.47832 * 59.99789 * 3 2 1 28 28 H 1.09002 * 109.46955 * 299.99511 * 3 2 1 29 29 H 1.08994 * 109.47452 * 54.47891 * 4 3 2 30 30 H 1.09004 * 109.46930 * 294.47370 * 4 3 2 31 31 H 1.08996 * 109.46623 * 306.73041 * 6 5 4 32 32 H 1.09002 * 109.46856 * 186.73527 * 6 5 4 33 33 H 0.97006 * 120.00368 * 179.97438 * 10 9 7 34 34 H 1.09004 * 109.54670 * 302.98442 * 17 15 5 35 35 H 1.09004 * 109.54256 * 63.16031 * 17 15 5 36 36 H 1.08999 * 109.51973 * 176.88912 * 18 17 15 37 37 H 1.08999 * 109.51825 * 297.07791 * 18 17 15 38 38 H 1.09003 * 109.47935 * 62.36965 * 19 18 17 39 39 H 1.08995 * 109.48431 * 182.40840 * 19 18 17 40 40 H 1.08997 * 109.48074 * 178.85761 * 21 20 19 41 41 H 1.09001 * 109.47791 * 58.82581 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0595 2.8212 -0.1339 6 6 3.8282 3.5836 1.1003 7 6 4.6830 3.0204 2.2063 8 1 5.2681 2.1288 2.0359 9 6 4.7180 3.6435 3.4357 10 7 5.4644 3.1524 4.4008 11 14 3.7065 5.1861 3.7303 12 1 2.3633 4.8078 4.2379 13 1 3.5615 5.9338 2.4554 14 1 4.3908 6.0430 4.7316 15 6 5.4802 2.8415 -0.5067 16 1 6.0654 2.3340 0.2601 17 6 5.9546 4.2922 -0.6369 18 6 7.4143 4.3008 -1.1013 19 6 7.5265 3.5323 -2.4206 20 8 7.0404 2.2010 -2.2376 21 6 5.6671 2.1294 -1.8490 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6766 1.9565 0.8899 28 1 1.6766 1.9563 -0.8901 29 1 3.9330 0.8456 -0.8372 30 1 3.9337 1.0166 0.9345 31 1 2.7774 3.5112 1.3805 32 1 4.0892 4.6291 0.9358 33 1 5.4894 3.5909 5.2657 34 1 5.3364 4.8138 -1.3676 35 1 5.8751 4.7899 0.3296 36 1 7.7432 5.3293 -1.2497 37 1 8.0393 3.8228 -0.3470 38 1 6.9331 4.0340 -3.1851 39 1 8.5699 3.4986 -2.7341 40 1 5.3711 1.0850 -1.7507 41 1 5.0495 2.6127 -2.6060 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254384251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:06 Heat of formation + Delta-G solvation = -81.407971 kcal Electronic energy + Delta-G solvation = -18601.943051 eV Core-core repulsion = 15901.306110 eV Total energy + Delta-G solvation = -2700.636940 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.68439 -38.40753 -35.75076 -34.59798 -33.72351 -31.33950 -30.36509 -27.87468 -26.15576 -24.31702 -24.18641 -22.31658 -21.39018 -20.76102 -18.89817 -17.62102 -17.09683 -16.45344 -16.29162 -16.08205 -15.75183 -15.25197 -14.93918 -14.69028 -14.45616 -14.06992 -13.86936 -13.50603 -13.30034 -13.15470 -12.82563 -12.55716 -12.34203 -12.23822 -11.97650 -11.89923 -11.81096 -11.73217 -11.70136 -11.39107 -11.28377 -11.02328 -10.77892 -10.34014 -9.01740 -8.31982 -6.35684 1.32183 1.33332 1.44564 2.31339 2.85574 3.03199 3.31812 3.87685 3.99840 4.04028 4.09546 4.13679 4.28261 4.34726 4.39243 4.48621 4.58610 4.68971 4.75625 4.77955 4.88680 4.91062 4.95916 5.02201 5.05097 5.07162 5.13308 5.16841 5.21147 5.31637 5.32851 5.39697 5.46847 5.54258 5.57630 6.08633 6.19893 6.34875 6.49466 6.70156 7.29921 8.84652 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.011034 C = 0.006552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.012806 B = 2537.079833 C = 4272.432745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.103 4.103 4 C 0.053 3.947 5 N -0.518 5.518 6 C 0.160 3.840 7 C -0.537 4.537 8 H 0.028 0.972 9 C 0.011 3.989 10 N -0.949 5.949 11 Si 0.942 3.058 12 H -0.268 1.268 13 H -0.243 1.243 14 H -0.285 1.285 15 C 0.061 3.939 16 H 0.011 0.989 17 C -0.110 4.110 18 C -0.150 4.150 19 C 0.060 3.940 20 O -0.403 6.403 21 C 0.076 3.924 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.008 0.992 31 H 0.028 0.972 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 0.420 -14.166 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.141 4.141 4 C -0.075 4.075 5 N -0.242 5.242 6 C 0.033 3.967 7 C -0.576 4.576 8 H 0.047 0.953 9 C -0.187 4.187 10 N -0.590 5.590 11 Si 0.766 3.234 12 H -0.193 1.193 13 H -0.166 1.166 14 H -0.211 1.211 15 C -0.049 4.049 16 H 0.029 0.971 17 C -0.148 4.148 18 C -0.188 4.188 19 C -0.016 4.016 20 O -0.321 6.321 21 C -0.001 4.001 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.026 0.974 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.129 0.871 40 H 0.109 0.891 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.140 0.511 -14.423 15.014 hybrid contribution 0.321 0.256 2.017 2.058 sum -3.819 0.767 -12.406 13.003 Atomic orbital electron populations 1.21722 0.94625 1.02097 1.01864 1.21473 0.96845 0.95755 1.01764 1.21484 0.93601 0.97330 1.01677 1.22147 0.96450 0.89759 0.99170 1.62540 1.15607 1.13191 1.32859 1.20079 0.95614 0.94570 0.86482 1.21806 1.26984 1.11457 0.97378 0.95337 1.25875 0.96280 1.00855 0.95660 1.70088 1.41982 1.42559 1.04364 0.85783 0.78925 0.79593 0.79136 1.19274 1.16600 1.21123 1.22003 0.89386 0.97259 0.96205 0.97053 1.21566 0.96430 0.95516 1.01280 1.22186 0.96028 1.02212 0.98412 1.22772 1.00974 0.82259 0.95609 1.87878 1.26952 1.28608 1.88711 1.22604 0.82498 1.00905 0.94058 0.91813 0.91670 0.93605 0.90831 0.93572 0.94049 0.90599 0.90288 0.97366 0.95356 0.94711 0.92675 0.90376 0.93466 0.88600 0.93481 0.91263 0.87050 0.89123 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.91 71.98 0.71 -2.49 16 2 C -0.12 -3.18 5.93 30.59 0.18 -3.00 16 3 C -0.10 -3.30 5.15 30.60 0.16 -3.14 16 4 C 0.05 1.99 4.69 86.30 0.40 2.39 16 5 N -0.52 -20.93 4.54 -874.98 -3.97 -24.91 16 6 C 0.16 7.53 3.58 85.56 0.31 7.84 16 7 C -0.54 -30.59 7.94 25.60 0.20 -30.39 16 8 H 0.03 1.85 6.17 -2.91 -0.02 1.83 16 9 C 0.01 0.64 5.47 84.65 0.46 1.10 16 10 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 11 Si 0.94 44.06 27.58 68.60 1.89 45.95 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 13 H -0.24 -10.46 6.39 99.48 0.64 -9.82 16 14 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 15 C 0.06 2.39 1.71 45.01 0.08 2.47 16 16 H 0.01 0.56 6.55 -2.39 -0.02 0.55 16 17 C -0.11 -3.94 4.84 30.71 0.15 -3.79 16 18 C -0.15 -4.44 6.14 30.69 0.19 -4.25 16 19 C 0.06 1.51 6.84 72.01 0.49 2.01 16 20 O -0.40 -12.89 10.77 -148.98 -1.60 -14.50 16 21 C 0.08 2.44 5.88 72.01 0.42 2.86 16 22 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.04 1.50 6.85 -2.39 -0.02 1.48 16 28 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.08 2.58 5.70 -2.39 -0.01 2.57 16 30 H 0.01 0.37 6.58 -2.39 -0.02 0.35 16 31 H 0.03 1.33 6.26 -2.39 -0.01 1.31 16 32 H 0.03 1.64 5.16 -2.39 -0.01 1.63 16 33 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 34 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 35 H 0.05 1.98 6.53 -2.38 -0.02 1.96 16 36 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.11 2.27 8.14 -2.39 -0.02 2.26 16 40 H 0.09 2.80 6.24 -2.39 -0.01 2.79 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -66.37 307.59 1.29 -65.08 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.91 Total: 16.32 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 3.76 Total: -28.40 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -3.67 Total: -84.46 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -1.60 Total: -14.50 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.89 Total: 45.95 kcal Total: -66.37 1.29 -65.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254384251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.324 kcal (2) G-P(sol) polarization free energy of solvation -66.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds