Wall clock time and date at job start Sun Mar 29 2020 22:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47342 * 2 1 4 4 C 1.52997 * 109.47031 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.46979 * 182.13902 * 4 3 2 6 6 C 1.46894 * 111.00124 * 68.85523 * 5 4 3 7 7 C 1.50699 * 109.47379 * 202.06264 * 6 5 4 8 8 H 1.07996 * 119.99789 * 5.26836 * 7 6 5 9 9 C 1.37880 * 120.00268 * 185.26117 * 7 6 5 10 10 N 1.31509 * 120.00307 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99776 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.46995 * 269.99607 * 11 9 7 13 13 H 1.48502 * 109.47041 * 29.99484 * 11 9 7 14 14 H 1.48497 * 109.46860 * 149.99646 * 11 9 7 15 15 C 1.46902 * 111.00101 * 192.81138 * 5 4 3 16 16 H 1.08999 * 109.51939 * 52.02319 * 15 5 4 17 17 C 1.53175 * 109.52349 * 172.21170 * 15 5 4 18 18 C 1.53181 * 109.03657 * 176.88462 * 17 15 5 19 19 C 1.53091 * 109.16448 * 303.02426 * 18 17 15 20 20 O 1.42909 * 109.41544 * 57.60334 * 19 18 17 21 21 C 1.42901 * 114.09988 * 298.84594 * 20 19 18 22 22 H 1.09004 * 109.47133 * 59.99490 * 1 2 3 23 23 H 1.08996 * 109.47283 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47209 * 300.00281 * 1 2 3 25 25 H 1.08992 * 109.46868 * 239.99808 * 2 1 3 26 26 H 1.09007 * 109.47039 * 120.00011 * 2 1 3 27 27 H 1.09005 * 109.46726 * 59.99954 * 3 2 1 28 28 H 1.08995 * 109.47118 * 300.00396 * 3 2 1 29 29 H 1.09004 * 109.47230 * 62.14048 * 4 3 2 30 30 H 1.08999 * 109.47399 * 302.14036 * 4 3 2 31 31 H 1.09003 * 109.47045 * 82.06698 * 6 5 4 32 32 H 1.09005 * 109.47238 * 322.06857 * 6 5 4 33 33 H 0.96993 * 120.00328 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.54563 * 296.75919 * 17 15 5 35 35 H 1.09001 * 109.53802 * 57.02254 * 17 15 5 36 36 H 1.08992 * 109.51975 * 183.11499 * 18 17 15 37 37 H 1.08996 * 109.57023 * 62.96219 * 18 17 15 38 38 H 1.09000 * 109.48322 * 297.62653 * 19 18 17 39 39 H 1.08997 * 109.49157 * 177.59597 * 19 18 17 40 40 H 1.09002 * 109.47764 * 301.17420 * 21 20 19 41 41 H 1.09001 * 109.48569 * 181.14793 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8265 0.0523 6 6 3.7683 3.4397 1.3549 7 6 3.7698 4.9402 1.2154 8 1 3.8828 5.3918 0.2409 9 6 3.6269 5.7366 2.3319 10 7 3.6278 7.0460 2.2101 11 14 3.4321 4.9555 4.0176 12 1 1.9904 4.7340 4.2968 13 1 4.1474 3.6544 4.0459 14 1 4.0034 5.8572 5.0499 15 6 5.4961 2.8883 -0.2491 16 1 5.6949 2.3650 -1.1844 17 6 5.9297 4.3518 -0.3776 18 6 7.4421 4.4059 -0.6143 19 6 8.1564 3.6869 0.5331 20 8 7.6848 2.3405 0.6169 21 6 6.2855 2.2279 0.8842 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8932 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8899 29 1 3.9337 0.9620 -0.9077 30 1 3.9330 0.8958 0.8710 31 1 4.5296 3.1411 2.0756 32 1 2.7896 3.1080 1.7019 33 1 3.5276 7.6063 2.9955 34 1 5.4122 4.8129 -1.2189 35 1 5.6849 4.8865 0.5401 36 1 7.7679 5.4453 -0.6518 37 1 7.6819 3.9147 -1.5573 38 1 7.9496 4.2033 1.4705 39 1 9.2306 3.6850 0.3485 40 1 6.0543 2.7254 1.8262 41 1 6.0119 1.1750 0.9525 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254384255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:08 Heat of formation + Delta-G solvation = -53.183651 kcal Electronic energy + Delta-G solvation = -18737.197842 eV Core-core repulsion = 16037.784800 eV Total energy + Delta-G solvation = -2699.413042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.37120 -36.84688 -34.54196 -32.50734 -32.34096 -29.76330 -28.70621 -26.58745 -24.50886 -23.04169 -22.66636 -21.07055 -20.03752 -18.88100 -16.87051 -15.94780 -15.65572 -15.37374 -14.79678 -14.50315 -14.11116 -13.96949 -13.42517 -13.17605 -12.71732 -12.55290 -12.31462 -12.09806 -11.98460 -11.79615 -11.29282 -11.07079 -10.94038 -10.71879 -10.61951 -10.46403 -10.27761 -10.20502 -10.00662 -9.83571 -9.62518 -9.15861 -9.03220 -8.52317 -7.25490 -6.07928 -4.00746 3.24200 3.32186 3.33891 4.21301 4.38228 4.68725 5.16240 5.21313 5.26281 5.34822 5.40688 5.45107 5.48373 5.55919 5.66038 5.75895 5.88746 5.91385 5.95452 6.00907 6.02861 6.09776 6.17380 6.24337 6.31091 6.32362 6.46135 6.56137 6.62080 6.72493 6.83986 6.87453 7.02116 7.46942 7.53235 7.65683 7.89166 8.08371 8.65187 9.03244 9.53377 11.04094 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.010574 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.288965 B = 2647.273770 C = 3995.583825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.116 4.116 4 C 0.053 3.947 5 N -0.518 5.518 6 C 0.146 3.854 7 C -0.500 4.500 8 H 0.090 0.910 9 C 0.067 3.933 10 N -0.898 5.898 11 Si 0.865 3.135 12 H -0.276 1.276 13 H -0.268 1.268 14 H -0.286 1.286 15 C 0.071 3.929 16 H 0.068 0.932 17 C -0.128 4.128 18 C -0.154 4.154 19 C 0.061 3.939 20 O -0.391 6.391 21 C 0.025 3.975 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.022 0.978 31 H 0.000 1.000 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 -10.472 -3.394 11.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.154 4.154 4 C -0.075 4.075 5 N -0.242 5.242 6 C 0.020 3.980 7 C -0.538 4.538 8 H 0.108 0.892 9 C -0.134 4.134 10 N -0.537 5.537 11 Si 0.693 3.307 12 H -0.202 1.202 13 H -0.193 1.193 14 H -0.212 1.212 15 C -0.038 4.038 16 H 0.086 0.914 17 C -0.165 4.165 18 C -0.192 4.192 19 C -0.016 4.016 20 O -0.309 6.309 21 C -0.053 4.053 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.017 0.983 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.139 0.861 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.955 -10.188 -3.669 11.004 hybrid contribution 0.074 -0.550 1.635 1.727 sum 2.029 -10.738 -2.035 11.116 Atomic orbital electron populations 1.21754 0.96115 1.00926 1.01989 1.21505 0.95675 0.97529 1.01376 1.21630 0.95035 0.95450 1.03290 1.22083 0.95481 0.90596 0.99357 1.62174 1.12947 1.14846 1.34241 1.20454 0.95463 0.96500 0.85564 1.21141 1.48350 0.88267 0.96086 0.89240 1.24894 0.95295 0.94717 0.98499 1.69876 1.50731 1.03230 1.29844 0.87014 0.78881 0.79645 0.85179 1.20176 1.19314 1.21232 1.22089 0.87461 0.97590 0.96710 0.91428 1.22195 0.91992 0.95808 1.06520 1.22227 0.98056 1.00480 0.98433 1.22551 0.97768 0.83111 0.98155 1.87804 1.23769 1.26511 1.92769 1.23434 0.81285 1.00682 0.99895 0.92725 0.93295 0.92754 0.92417 0.92550 0.91400 0.91276 0.92020 0.96026 0.98254 0.95663 0.92689 0.91698 0.86057 0.91247 0.92447 0.93128 0.89836 0.91904 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.12 -1.55 5.93 -26.73 -0.16 -1.71 16 3 C -0.12 -1.83 5.27 -26.73 -0.14 -1.97 16 4 C 0.05 0.89 4.40 -3.82 -0.02 0.88 16 5 N -0.52 -10.46 4.45 -227.92 -1.01 -11.47 16 6 C 0.15 3.36 3.44 -4.98 -0.02 3.35 16 7 C -0.50 -13.33 6.95 -34.44 -0.24 -13.57 16 8 H 0.09 2.60 6.65 -52.49 -0.35 2.25 16 9 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 10 N -0.90 -26.44 13.96 55.43 0.77 -25.67 16 11 Si 0.87 20.88 27.58 -169.99 -4.69 16.19 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.27 -6.26 6.39 56.52 0.36 -5.90 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.07 1.34 2.40 -67.58 -0.16 1.18 16 16 H 0.07 1.22 7.94 -51.93 -0.41 0.81 16 17 C -0.13 -2.54 4.09 -26.55 -0.11 -2.65 16 18 C -0.15 -2.53 6.14 -26.59 -0.16 -2.69 16 19 C 0.06 0.99 6.84 37.20 0.25 1.24 16 20 O -0.39 -7.06 10.77 -35.23 -0.38 -7.44 16 21 C 0.03 0.46 5.51 37.20 0.21 0.67 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.07 1.19 6.31 -51.93 -0.33 0.86 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.95 7.90 -51.93 -0.41 0.54 16 30 H 0.02 0.36 7.19 -51.93 -0.37 -0.01 16 31 H 0.00 0.00 4.03 -51.93 -0.21 -0.21 16 32 H 0.03 0.59 5.69 -51.93 -0.30 0.30 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.06 1.34 7.95 -51.93 -0.41 0.92 16 35 H 0.12 2.85 5.01 -51.93 -0.26 2.59 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.28 5.86 -51.93 -0.30 0.98 16 41 H 0.08 1.35 7.04 -51.93 -0.37 0.98 16 LS Contribution 305.01 15.07 4.60 4.60 Total: -1.00 -28.23 305.01 -8.11 -36.35 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.12 Total: 2.30 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -0.28 Total: -14.86 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.24 Total: -37.14 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.38 Total: -7.44 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.69 Total: 16.19 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.23 -8.11 -36.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254384255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.839 kcal (2) G-P(sol) polarization free energy of solvation -28.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds