Wall clock time and date at job start Sun Mar 29 2020 22:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47342 * 2 1 4 4 C 1.52997 * 109.47031 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.46979 * 182.13902 * 4 3 2 6 6 C 1.46894 * 111.00124 * 68.85523 * 5 4 3 7 7 C 1.50699 * 109.47379 * 202.06264 * 6 5 4 8 8 H 1.07996 * 119.99789 * 5.26836 * 7 6 5 9 9 C 1.37880 * 120.00268 * 185.26117 * 7 6 5 10 10 N 1.31509 * 120.00307 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99776 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.46995 * 269.99607 * 11 9 7 13 13 H 1.48502 * 109.47041 * 29.99484 * 11 9 7 14 14 H 1.48497 * 109.46860 * 149.99646 * 11 9 7 15 15 C 1.46902 * 111.00101 * 192.81138 * 5 4 3 16 16 H 1.08999 * 109.51939 * 52.02319 * 15 5 4 17 17 C 1.53175 * 109.52349 * 172.21170 * 15 5 4 18 18 C 1.53181 * 109.03657 * 176.88462 * 17 15 5 19 19 C 1.53091 * 109.16448 * 303.02426 * 18 17 15 20 20 O 1.42909 * 109.41544 * 57.60334 * 19 18 17 21 21 C 1.42901 * 114.09988 * 298.84594 * 20 19 18 22 22 H 1.09004 * 109.47133 * 59.99490 * 1 2 3 23 23 H 1.08996 * 109.47283 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47209 * 300.00281 * 1 2 3 25 25 H 1.08992 * 109.46868 * 239.99808 * 2 1 3 26 26 H 1.09007 * 109.47039 * 120.00011 * 2 1 3 27 27 H 1.09005 * 109.46726 * 59.99954 * 3 2 1 28 28 H 1.08995 * 109.47118 * 300.00396 * 3 2 1 29 29 H 1.09004 * 109.47230 * 62.14048 * 4 3 2 30 30 H 1.08999 * 109.47399 * 302.14036 * 4 3 2 31 31 H 1.09003 * 109.47045 * 82.06698 * 6 5 4 32 32 H 1.09005 * 109.47238 * 322.06857 * 6 5 4 33 33 H 0.96993 * 120.00328 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.54563 * 296.75919 * 17 15 5 35 35 H 1.09001 * 109.53802 * 57.02254 * 17 15 5 36 36 H 1.08992 * 109.51975 * 183.11499 * 18 17 15 37 37 H 1.08996 * 109.57023 * 62.96219 * 18 17 15 38 38 H 1.09000 * 109.48322 * 297.62653 * 19 18 17 39 39 H 1.08997 * 109.49157 * 177.59597 * 19 18 17 40 40 H 1.09002 * 109.47764 * 301.17420 * 21 20 19 41 41 H 1.09001 * 109.48569 * 181.14793 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8265 0.0523 6 6 3.7683 3.4397 1.3549 7 6 3.7698 4.9402 1.2154 8 1 3.8828 5.3918 0.2409 9 6 3.6269 5.7366 2.3319 10 7 3.6278 7.0460 2.2101 11 14 3.4321 4.9555 4.0176 12 1 1.9904 4.7340 4.2968 13 1 4.1474 3.6544 4.0459 14 1 4.0034 5.8572 5.0499 15 6 5.4961 2.8883 -0.2491 16 1 5.6949 2.3650 -1.1844 17 6 5.9297 4.3518 -0.3776 18 6 7.4421 4.4059 -0.6143 19 6 8.1564 3.6869 0.5331 20 8 7.6848 2.3405 0.6169 21 6 6.2855 2.2279 0.8842 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8932 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8899 29 1 3.9337 0.9620 -0.9077 30 1 3.9330 0.8958 0.8710 31 1 4.5296 3.1411 2.0756 32 1 2.7896 3.1080 1.7019 33 1 3.5276 7.6063 2.9955 34 1 5.4122 4.8129 -1.2189 35 1 5.6849 4.8865 0.5401 36 1 7.7679 5.4453 -0.6518 37 1 7.6819 3.9147 -1.5573 38 1 7.9496 4.2033 1.4705 39 1 9.2306 3.6850 0.3485 40 1 6.0543 2.7254 1.8262 41 1 6.0119 1.1750 0.9525 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254384255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:07 Heat of formation + Delta-G solvation = -71.352725 kcal Electronic energy + Delta-G solvation = -18737.985712 eV Core-core repulsion = 16037.784800 eV Total energy + Delta-G solvation = -2700.200912 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.86978 -38.28631 -35.80830 -34.53962 -33.76065 -31.08436 -30.50834 -28.04823 -25.99973 -24.50873 -24.28224 -22.29057 -21.44068 -20.48740 -18.89973 -17.41769 -17.16993 -16.73889 -16.21473 -16.03692 -15.85791 -15.41532 -14.65631 -14.55487 -14.44535 -14.12989 -13.65083 -13.50341 -13.45996 -13.28300 -12.97728 -12.42299 -12.36104 -12.24905 -12.03048 -11.86925 -11.78850 -11.66727 -11.62714 -11.36539 -11.16920 -10.89637 -10.63034 -10.60421 -8.84805 -8.22334 -6.17781 1.31823 1.33892 1.41647 2.34758 2.81915 3.08994 3.25412 3.88210 3.96817 4.04885 4.09021 4.15586 4.21532 4.31065 4.34949 4.46036 4.49524 4.59322 4.68553 4.71981 4.82133 4.92910 4.95711 5.00617 5.05825 5.07422 5.08347 5.14636 5.18965 5.31165 5.37060 5.45153 5.52107 5.63997 5.79794 6.05910 6.12224 6.49601 6.71445 6.84545 7.38857 8.93048 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.010574 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.288965 B = 2647.273770 C = 3995.583825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.113 4.113 4 C 0.053 3.947 5 N -0.535 5.535 6 C 0.158 3.842 7 C -0.490 4.490 8 H 0.052 0.948 9 C 0.011 3.989 10 N -0.945 5.945 11 Si 0.926 3.074 12 H -0.269 1.269 13 H -0.254 1.254 14 H -0.286 1.286 15 C 0.072 3.928 16 H 0.085 0.915 17 C -0.125 4.125 18 C -0.147 4.147 19 C 0.058 3.942 20 O -0.392 6.392 21 C 0.033 3.967 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.030 0.970 31 H 0.000 1.000 32 H 0.026 0.974 33 H 0.263 0.737 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.037 0.963 39 H 0.119 0.881 40 H 0.039 0.961 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.754 -13.124 -3.455 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.151 4.151 4 C -0.075 4.075 5 N -0.259 5.259 6 C 0.031 3.969 7 C -0.528 4.528 8 H 0.070 0.930 9 C -0.186 4.186 10 N -0.587 5.587 11 Si 0.751 3.249 12 H -0.194 1.194 13 H -0.178 1.178 14 H -0.212 1.212 15 C -0.037 4.037 16 H 0.103 0.897 17 C -0.163 4.163 18 C -0.185 4.185 19 C -0.018 4.018 20 O -0.310 6.310 21 C -0.045 4.045 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.017 0.983 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.137 0.863 40 H 0.057 0.943 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.616 -12.867 -3.741 13.653 hybrid contribution -0.109 0.306 1.527 1.561 sum 2.506 -12.561 -2.214 12.999 Atomic orbital electron populations 1.21757 0.95359 1.02096 1.01583 1.21459 0.96320 0.95187 1.02429 1.21601 0.94435 0.97478 1.01613 1.22204 0.96019 0.88573 1.00691 1.62080 1.14065 1.17287 1.32450 1.20185 0.95346 0.94132 0.87208 1.21292 1.46627 0.90438 0.94459 0.92955 1.25642 0.95506 0.95044 1.02409 1.70021 1.53002 1.04800 1.30864 0.86030 0.79190 0.79232 0.80455 1.19447 1.17783 1.21168 1.22108 0.86899 0.96905 0.97743 0.89692 1.21995 0.94621 0.96154 1.03497 1.22173 0.95291 1.01462 0.99555 1.22719 0.99641 0.82184 0.97273 1.87806 1.23226 1.27402 1.92606 1.23308 0.81636 1.01329 0.98234 0.92800 0.91324 0.93582 0.90852 0.91921 0.93719 0.92312 0.89895 0.95207 0.98259 0.95642 0.92778 0.93595 0.90200 0.90497 0.90517 0.94503 0.86299 0.94317 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.91 71.98 0.71 -2.41 16 2 C -0.12 -2.62 5.93 30.59 0.18 -2.44 16 3 C -0.11 -3.41 5.27 30.59 0.16 -3.25 16 4 C 0.05 1.66 4.40 86.30 0.38 2.04 16 5 N -0.53 -21.27 4.45 -875.00 -3.89 -25.16 16 6 C 0.16 7.29 3.44 85.56 0.29 7.58 16 7 C -0.49 -26.99 6.95 25.60 0.18 -26.81 16 8 H 0.05 3.21 6.65 -2.91 -0.02 3.19 16 9 C 0.01 0.62 5.47 84.66 0.46 1.08 16 10 N -0.95 -57.80 13.96 21.45 0.30 -57.50 16 11 Si 0.93 43.51 27.58 68.60 1.89 45.40 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 H -0.25 -11.22 6.39 99.48 0.64 -10.58 16 14 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 15 C 0.07 2.66 2.40 45.00 0.11 2.77 16 16 H 0.09 2.86 7.94 -2.39 -0.02 2.84 16 17 C -0.12 -5.03 4.09 30.71 0.13 -4.90 16 18 C -0.15 -4.64 6.14 30.69 0.19 -4.45 16 19 C 0.06 1.77 6.84 72.01 0.49 2.26 16 20 O -0.39 -13.20 10.77 -148.98 -1.60 -14.80 16 21 C 0.03 1.16 5.51 72.01 0.40 1.56 16 22 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.04 1.54 6.31 -2.38 -0.02 1.52 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.08 2.28 7.90 -2.38 -0.02 2.26 16 30 H 0.03 0.90 7.19 -2.39 -0.02 0.89 16 31 H 0.00 0.00 4.03 -2.39 -0.01 -0.01 16 32 H 0.03 1.18 5.69 -2.38 -0.01 1.17 16 33 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.05 1.96 7.95 -2.39 -0.02 1.94 16 35 H 0.08 3.91 5.01 -2.39 -0.01 3.90 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.04 1.55 5.86 -2.39 -0.01 1.54 16 41 H 0.10 3.05 7.04 -2.39 -0.02 3.03 16 Total: -1.00 -62.16 305.01 1.29 -60.87 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.91 Total: 18.14 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 3.68 Total: -26.95 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -3.59 Total: -82.66 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -1.60 Total: -14.80 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.89 Total: 45.40 kcal Total: -62.16 1.29 -60.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254384255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.481 kcal (2) G-P(sol) polarization free energy of solvation -62.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds