Wall clock time and date at job start Sun Mar 29 2020 22:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53005 * 109.46958 * 2 1 4 4 C 1.53002 * 109.46947 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46802 * 179.97438 * 4 3 2 6 6 C 1.46904 * 110.99708 * 189.99980 * 5 4 3 7 7 C 1.50702 * 109.47153 * 149.75705 * 6 5 4 8 8 H 1.08004 * 119.99243 * 354.24274 * 7 6 5 9 9 C 1.37873 * 120.00157 * 174.24509 * 7 6 5 10 10 N 1.31510 * 119.99811 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99771 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47347 * 89.99921 * 11 9 7 13 13 H 1.48503 * 109.46840 * 209.99957 * 11 9 7 14 14 H 1.48501 * 109.47225 * 329.99282 * 11 9 7 15 15 C 1.46901 * 110.99904 * 66.04922 * 5 4 3 16 16 C 1.53186 * 109.54165 * 77.08226 * 15 5 4 17 17 C 1.53093 * 109.15856 * 176.84981 * 16 15 5 18 18 O 1.42904 * 109.41445 * 302.38598 * 17 16 15 19 19 C 1.42902 * 114.09744 * 61.16461 * 18 17 16 20 20 C 1.53099 * 109.41330 * 298.84171 * 19 18 17 21 21 H 1.08999 * 109.47349 * 299.99734 * 1 2 3 22 22 H 1.09006 * 109.47117 * 60.00255 * 1 2 3 23 23 H 1.09004 * 109.47400 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47349 * 240.00266 * 2 1 3 25 25 H 1.08999 * 109.47364 * 119.99463 * 2 1 3 26 26 H 1.09006 * 109.47012 * 60.00351 * 3 2 1 27 27 H 1.09000 * 109.47387 * 299.99901 * 3 2 1 28 28 H 1.08999 * 109.47187 * 60.00371 * 4 3 2 29 29 H 1.08993 * 109.47410 * 299.99960 * 4 3 2 30 30 H 1.09000 * 109.47093 * 269.75587 * 6 5 4 31 31 H 1.09002 * 109.47084 * 29.75390 * 6 5 4 32 32 H 0.97004 * 119.99832 * 180.02562 * 10 9 7 33 33 H 1.09001 * 109.61689 * 316.86155 * 15 5 4 34 34 H 1.08998 * 109.52268 * 296.74933 * 16 15 5 35 35 H 1.08991 * 109.52664 * 56.94160 * 16 15 5 36 36 H 1.09004 * 109.47448 * 182.40520 * 17 16 15 37 37 H 1.09002 * 109.48370 * 62.37212 * 17 16 15 38 38 H 1.08999 * 109.48331 * 178.85679 * 19 18 17 39 39 H 1.09003 * 109.49261 * 58.82382 * 19 18 17 40 40 H 1.09000 * 109.52200 * 297.70472 * 20 19 18 41 41 H 1.08997 * 109.51939 * 177.51698 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8276 0.0000 6 6 5.5085 2.8736 -0.2375 7 6 5.8606 4.1552 -0.9480 8 1 5.0778 4.8207 -1.2807 9 6 7.1820 4.4780 -1.1732 10 7 8.1351 3.6677 -0.7675 11 14 7.6183 6.0662 -2.0544 12 1 7.7799 7.1563 -1.0591 13 1 8.8893 5.8850 -2.8008 14 1 6.5328 6.4197 -3.0041 15 6 3.7095 3.5102 1.2528 16 6 4.6549 3.0518 2.3676 17 6 4.3336 3.8258 3.6488 18 8 4.4548 5.2277 3.3998 19 6 3.5616 5.7221 2.3999 20 6 3.8517 5.0242 1.0684 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 1.6765 1.9564 0.8901 27 1 1.6766 1.9564 -0.8900 28 1 3.9336 0.9287 -0.8891 29 1 3.9329 0.9289 0.8908 30 1 6.0346 2.8305 0.7161 31 1 5.8028 2.0239 -0.8536 32 1 9.0648 3.8950 -0.9256 33 1 2.6815 3.2710 1.5251 34 1 4.5202 1.9845 2.5434 35 1 5.6862 3.2461 2.0735 36 1 5.0313 3.5344 4.4340 37 1 3.3153 3.5993 3.9647 38 1 3.7029 6.7968 2.2854 39 1 2.5330 5.5205 2.6993 40 1 4.8669 5.2583 0.7481 41 1 3.1426 5.3676 0.3152 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255040540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:45 Heat of formation + Delta-G solvation = -56.038505 kcal Electronic energy + Delta-G solvation = -18654.760235 eV Core-core repulsion = 15955.223397 eV Total energy + Delta-G solvation = -2699.536838 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.28483 -36.86032 -34.57952 -32.53853 -31.13255 -30.53854 -28.72724 -26.27955 -24.16190 -23.10318 -22.63749 -21.00680 -20.68461 -18.58980 -16.33648 -16.00079 -15.36489 -15.14597 -15.02417 -14.57507 -14.19387 -13.81162 -13.67040 -13.11098 -12.95024 -12.57421 -12.16850 -11.90823 -11.77484 -11.18759 -11.12915 -11.05732 -11.00161 -10.80580 -10.66661 -10.51343 -10.40596 -10.18297 -10.04143 -9.83179 -9.34936 -9.20478 -8.89832 -8.33645 -7.13969 -5.96956 -3.95721 3.35101 3.41446 3.44989 4.31898 4.45444 4.79753 5.10356 5.20523 5.30445 5.34120 5.35858 5.44743 5.54341 5.62384 5.67898 5.79661 5.84597 5.88201 5.91869 5.96821 6.03187 6.10169 6.15998 6.18917 6.29073 6.32888 6.51691 6.59226 6.64433 6.70099 6.81444 7.18497 7.36498 7.51794 7.65158 7.89832 8.20043 8.25035 8.60322 9.10532 9.65943 11.12797 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017844 B = 0.008171 C = 0.006405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.773302 B = 3426.114660 C = 4370.260085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.115 4.115 4 C 0.055 3.945 5 N -0.530 5.530 6 C 0.177 3.823 7 C -0.494 4.494 8 H 0.065 0.935 9 C 0.053 3.947 10 N -0.900 5.900 11 Si 0.892 3.108 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.098 3.902 16 C -0.197 4.197 17 C 0.071 3.929 18 O -0.385 6.385 19 C 0.063 3.937 20 C -0.152 4.152 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.020 0.980 30 H 0.021 0.979 31 H 0.017 0.983 32 H 0.260 0.740 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.087 0.913 39 H 0.037 0.963 40 H 0.110 0.890 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.566 -3.140 5.481 13.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.073 4.073 5 N -0.253 5.253 6 C 0.052 3.948 7 C -0.533 4.533 8 H 0.083 0.917 9 C -0.147 4.147 10 N -0.540 5.540 11 Si 0.720 3.280 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.011 4.011 16 C -0.236 4.236 17 C -0.007 4.007 18 O -0.304 6.304 19 C -0.014 4.014 20 C -0.190 4.190 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.128 0.872 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.466 -2.801 5.156 12.880 hybrid contribution 0.592 0.102 -0.002 0.601 sum -10.874 -2.700 5.154 12.332 Atomic orbital electron populations 1.21756 0.96263 1.01022 1.01666 1.21504 0.95409 0.97583 1.01702 1.21655 0.95982 0.95548 1.02129 1.22084 0.94148 0.91309 0.99809 1.62333 1.19024 1.12592 1.31320 1.20041 0.80551 0.97497 0.96662 1.21194 0.91389 1.05089 1.35616 0.91698 1.24981 0.96523 0.97026 0.96217 1.69948 0.99800 1.36813 1.47471 0.86584 0.77769 0.83814 0.79808 1.20691 1.21429 1.19856 1.21509 0.96455 0.94780 0.88365 1.22997 1.04636 0.99307 0.96639 1.22428 0.99676 0.81611 0.96953 1.87883 1.61519 1.22857 1.58155 1.22630 0.91797 0.98540 0.88475 1.22430 1.06336 0.94398 0.95851 0.93026 0.92791 0.93217 0.92117 0.92506 0.92518 0.91444 0.91498 0.96186 0.96176 0.96495 0.93063 0.92154 0.92254 0.88259 0.89803 0.94340 0.89482 0.94512 0.87191 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.15 0.37 -1.18 16 2 C -0.12 -1.50 5.93 -26.73 -0.16 -1.66 16 3 C -0.12 -1.68 5.18 -26.73 -0.14 -1.82 16 4 C 0.06 0.98 4.81 -3.82 -0.02 0.96 16 5 N -0.53 -11.09 4.34 -227.85 -0.99 -12.08 16 6 C 0.18 4.47 4.56 -4.97 -0.02 4.45 16 7 C -0.49 -13.51 6.94 -34.44 -0.24 -13.75 16 8 H 0.06 1.78 7.18 -52.48 -0.38 1.40 16 9 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 10 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 11 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.10 1.83 2.13 -67.53 -0.14 1.69 16 16 C -0.20 -3.61 4.74 -26.59 -0.13 -3.74 16 17 C 0.07 1.14 6.84 37.21 0.25 1.39 16 18 O -0.39 -7.02 10.77 -35.23 -0.38 -7.40 16 19 C 0.06 1.03 6.84 37.21 0.25 1.28 16 20 C -0.15 -2.91 4.85 -26.59 -0.13 -3.04 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.81 6.28 -51.93 -0.33 0.49 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.24 7.78 -51.93 -0.40 0.83 16 29 H 0.02 0.35 6.86 -51.93 -0.36 0.00 16 30 H 0.02 0.55 4.76 -51.93 -0.25 0.30 16 31 H 0.02 0.46 7.56 -51.93 -0.39 0.07 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.06 1.03 5.93 -51.93 -0.31 0.72 16 34 H 0.06 1.02 7.02 -51.93 -0.36 0.65 16 35 H 0.10 2.21 5.62 -51.93 -0.29 1.91 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.11 2.53 5.60 -51.93 -0.29 2.24 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 309.93 15.07 4.67 4.67 Total: -1.00 -29.02 309.93 -8.32 -37.34 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.14 Total: 0.63 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -0.20 Total: -14.01 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: -0.25 Total: -37.89 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.38 Total: -7.40 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.02 -8.32 -37.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255040540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.694 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds