Wall clock time and date at job start Sun Mar 29 2020 22:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53005 * 109.46958 * 2 1 4 4 C 1.53002 * 109.46947 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46802 * 179.97438 * 4 3 2 6 6 C 1.46904 * 110.99708 * 189.99980 * 5 4 3 7 7 C 1.50702 * 109.47153 * 149.75705 * 6 5 4 8 8 H 1.08004 * 119.99243 * 354.24274 * 7 6 5 9 9 C 1.37873 * 120.00157 * 174.24509 * 7 6 5 10 10 N 1.31510 * 119.99811 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99771 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47347 * 89.99921 * 11 9 7 13 13 H 1.48503 * 109.46840 * 209.99957 * 11 9 7 14 14 H 1.48501 * 109.47225 * 329.99282 * 11 9 7 15 15 C 1.46901 * 110.99904 * 66.04922 * 5 4 3 16 16 C 1.53186 * 109.54165 * 77.08226 * 15 5 4 17 17 C 1.53093 * 109.15856 * 176.84981 * 16 15 5 18 18 O 1.42904 * 109.41445 * 302.38598 * 17 16 15 19 19 C 1.42902 * 114.09744 * 61.16461 * 18 17 16 20 20 C 1.53099 * 109.41330 * 298.84171 * 19 18 17 21 21 H 1.08999 * 109.47349 * 299.99734 * 1 2 3 22 22 H 1.09006 * 109.47117 * 60.00255 * 1 2 3 23 23 H 1.09004 * 109.47400 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47349 * 240.00266 * 2 1 3 25 25 H 1.08999 * 109.47364 * 119.99463 * 2 1 3 26 26 H 1.09006 * 109.47012 * 60.00351 * 3 2 1 27 27 H 1.09000 * 109.47387 * 299.99901 * 3 2 1 28 28 H 1.08999 * 109.47187 * 60.00371 * 4 3 2 29 29 H 1.08993 * 109.47410 * 299.99960 * 4 3 2 30 30 H 1.09000 * 109.47093 * 269.75587 * 6 5 4 31 31 H 1.09002 * 109.47084 * 29.75390 * 6 5 4 32 32 H 0.97004 * 119.99832 * 180.02562 * 10 9 7 33 33 H 1.09001 * 109.61689 * 316.86155 * 15 5 4 34 34 H 1.08998 * 109.52268 * 296.74933 * 16 15 5 35 35 H 1.08991 * 109.52664 * 56.94160 * 16 15 5 36 36 H 1.09004 * 109.47448 * 182.40520 * 17 16 15 37 37 H 1.09002 * 109.48370 * 62.37212 * 17 16 15 38 38 H 1.08999 * 109.48331 * 178.85679 * 19 18 17 39 39 H 1.09003 * 109.49261 * 58.82382 * 19 18 17 40 40 H 1.09000 * 109.52200 * 297.70472 * 20 19 18 41 41 H 1.08997 * 109.51939 * 177.51698 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8276 0.0000 6 6 5.5085 2.8736 -0.2375 7 6 5.8606 4.1552 -0.9480 8 1 5.0778 4.8207 -1.2807 9 6 7.1820 4.4780 -1.1732 10 7 8.1351 3.6677 -0.7675 11 14 7.6183 6.0662 -2.0544 12 1 7.7799 7.1563 -1.0591 13 1 8.8893 5.8850 -2.8008 14 1 6.5328 6.4197 -3.0041 15 6 3.7095 3.5102 1.2528 16 6 4.6549 3.0518 2.3676 17 6 4.3336 3.8258 3.6488 18 8 4.4548 5.2277 3.3998 19 6 3.5616 5.7221 2.3999 20 6 3.8517 5.0242 1.0684 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 1.6765 1.9564 0.8901 27 1 1.6766 1.9564 -0.8900 28 1 3.9336 0.9287 -0.8891 29 1 3.9329 0.9289 0.8908 30 1 6.0346 2.8305 0.7161 31 1 5.8028 2.0239 -0.8536 32 1 9.0648 3.8950 -0.9256 33 1 2.6815 3.2710 1.5251 34 1 4.5202 1.9845 2.5434 35 1 5.6862 3.2461 2.0735 36 1 5.0313 3.5344 4.4340 37 1 3.3153 3.5993 3.9647 38 1 3.7029 6.7968 2.2854 39 1 2.5330 5.5205 2.6993 40 1 4.8669 5.2583 0.7481 41 1 3.1426 5.3676 0.3152 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255040540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:45 Heat of formation + Delta-G solvation = -74.455661 kcal Electronic energy + Delta-G solvation = -18655.558862 eV Core-core repulsion = 15955.223397 eV Total energy + Delta-G solvation = -2700.335465 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76318 -38.30864 -35.82924 -34.57440 -32.57995 -31.92847 -30.30503 -27.98228 -25.64292 -24.52952 -24.23584 -22.45959 -21.88479 -20.15117 -18.42184 -17.43416 -16.79461 -16.65742 -16.42424 -16.27796 -15.61808 -15.21710 -15.05458 -14.49209 -14.35565 -14.13534 -13.59881 -13.19936 -13.15132 -13.01356 -12.86961 -12.58594 -12.45648 -12.30614 -12.13152 -11.89482 -11.82154 -11.67217 -11.46245 -11.32438 -11.19628 -10.81956 -10.49556 -10.38310 -8.86535 -8.12627 -6.18669 1.40430 1.41047 1.51733 2.42347 3.03042 3.17804 3.28858 3.88866 3.98836 4.04471 4.14217 4.16973 4.31743 4.37115 4.40208 4.48324 4.57646 4.62848 4.70059 4.81339 4.81806 4.83903 4.95648 5.02471 5.06394 5.12598 5.16439 5.19273 5.27706 5.33312 5.44820 5.51613 5.55460 5.71492 5.77277 6.18016 6.35074 6.49555 6.71615 6.94303 7.47111 8.96225 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017844 B = 0.008171 C = 0.006405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.773302 B = 3426.114660 C = 4370.260085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C -0.103 4.103 4 C 0.054 3.946 5 N -0.539 5.539 6 C 0.192 3.808 7 C -0.497 4.497 8 H 0.061 0.939 9 C -0.001 4.001 10 N -0.937 5.937 11 Si 0.957 3.043 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.097 3.903 16 C -0.190 4.190 17 C 0.072 3.928 18 O -0.407 6.407 19 C 0.066 3.934 20 C -0.151 4.151 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.022 0.978 30 H 0.002 0.998 31 H -0.015 1.015 32 H 0.260 0.740 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.912 -2.693 6.336 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.141 4.141 4 C -0.074 4.074 5 N -0.262 5.262 6 C 0.066 3.934 7 C -0.535 4.535 8 H 0.079 0.921 9 C -0.198 4.198 10 N -0.579 5.579 11 Si 0.783 3.217 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.189 1.189 15 C -0.011 4.011 16 C -0.229 4.229 17 C -0.005 4.005 18 O -0.327 6.327 19 C -0.011 4.011 20 C -0.189 4.189 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.020 0.980 31 H 0.003 0.997 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.837 -2.356 6.014 15.270 hybrid contribution 1.293 -0.089 -0.257 1.321 sum -12.544 -2.445 5.757 14.017 Atomic orbital electron populations 1.21725 0.94515 1.02109 1.02008 1.21478 0.96855 0.95650 1.01905 1.21556 0.92911 0.97468 1.02152 1.22161 0.96608 0.89443 0.99186 1.62255 1.15883 1.14757 1.33272 1.19694 0.83426 0.95391 0.94915 1.21443 0.91431 1.05549 1.35097 0.92064 1.25804 0.96543 1.00296 0.97135 1.70076 1.00058 1.38746 1.49017 0.85561 0.77581 0.79854 0.78753 1.20131 1.21126 1.18942 1.21629 0.97828 0.94353 0.87334 1.22864 1.01588 1.00435 0.97970 1.22549 1.01953 0.80305 0.95693 1.87863 1.62518 1.23899 1.58377 1.22702 0.93140 0.98823 0.86435 1.22341 1.03589 0.95098 0.97863 0.92353 0.92792 0.91824 0.92406 0.91943 0.91579 0.92170 0.93074 0.95937 0.98016 0.99700 0.93102 0.89226 0.91229 0.93073 0.88567 0.91011 0.88314 0.91195 0.91807 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.91 71.98 0.71 -1.88 16 2 C -0.12 -2.66 5.93 30.59 0.18 -2.48 16 3 C -0.10 -2.81 5.18 30.60 0.16 -2.65 16 4 C 0.05 1.92 4.81 86.30 0.41 2.34 16 5 N -0.54 -22.81 4.34 -874.79 -3.80 -26.61 16 6 C 0.19 10.14 4.56 85.56 0.39 10.53 16 7 C -0.50 -28.07 6.94 25.60 0.18 -27.90 16 8 H 0.06 3.43 7.18 -2.91 -0.02 3.41 16 9 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 10 N -0.94 -57.29 13.29 21.44 0.28 -57.01 16 11 Si 0.96 45.34 29.54 68.60 2.03 47.36 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 C 0.10 3.53 2.13 45.04 0.10 3.63 16 16 C -0.19 -6.88 4.74 30.69 0.15 -6.73 16 17 C 0.07 2.15 6.84 72.01 0.49 2.65 16 18 O -0.41 -14.11 10.77 -148.98 -1.60 -15.71 16 19 C 0.07 2.00 6.84 72.02 0.49 2.49 16 20 C -0.15 -5.65 4.85 30.69 0.15 -5.50 16 21 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 22 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 23 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 24 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.68 6.28 -2.38 -0.01 1.67 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 1.94 7.78 -2.39 -0.02 1.93 16 29 H 0.02 0.78 6.86 -2.39 -0.02 0.77 16 30 H 0.00 0.13 4.76 -2.39 -0.01 0.12 16 31 H -0.02 -0.88 7.56 -2.39 -0.02 -0.89 16 32 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.09 2.77 5.93 -2.39 -0.01 2.76 16 34 H 0.07 2.33 7.02 -2.39 -0.02 2.31 16 35 H 0.05 2.37 5.62 -2.39 -0.01 2.36 16 36 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 3.00 5.60 -2.39 -0.01 2.99 16 41 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -64.72 309.93 1.76 -62.96 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.98 Total: 14.10 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 3.87 Total: -25.10 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -3.52 Total: -83.62 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -1.60 Total: -15.71 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -64.72 1.76 -62.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255040540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.497 kcal (2) G-P(sol) polarization free energy of solvation -64.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds