Wall clock time and date at job start Sun Mar 29 2020 23:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47314 * 2 1 4 4 H 1.09002 * 109.47255 * 54.37663 * 3 2 1 5 5 C 1.50697 * 109.47503 * 174.37613 * 3 2 1 6 6 H 1.07996 * 120.00153 * 119.99736 * 5 3 2 7 7 C 1.37882 * 120.00137 * 300.00534 * 5 3 2 8 8 N 1.31513 * 119.99330 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00341 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47065 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47198 * 119.99581 * 9 7 5 12 12 H 1.48501 * 109.46892 * 239.99835 * 9 7 5 13 13 N 1.46904 * 109.47666 * 294.37966 * 3 2 1 14 14 C 1.46897 * 111.00476 * 155.69079 * 13 3 2 15 15 H 1.08996 * 109.46746 * 33.69662 * 14 13 3 16 16 C 1.53000 * 109.46890 * 153.69869 * 14 13 3 17 17 C 1.53007 * 109.46836 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.46682 * 300.00013 * 17 16 14 19 19 C 1.53000 * 109.47457 * 299.99651 * 18 17 16 20 20 O 1.42902 * 109.46526 * 180.02562 * 18 17 16 21 21 C 1.53000 * 109.47496 * 60.00391 * 18 17 16 22 22 C 1.53000 * 109.46579 * 299.99407 * 21 18 17 23 23 H 1.08994 * 109.47449 * 185.66388 * 1 2 3 24 24 H 1.08998 * 109.47109 * 305.66590 * 1 2 3 25 25 H 1.09005 * 109.47287 * 65.66467 * 1 2 3 26 26 H 1.09002 * 109.46568 * 240.00131 * 2 1 3 27 27 H 1.08996 * 109.47352 * 120.00100 * 2 1 3 28 28 H 0.97004 * 119.99662 * 180.02562 * 8 7 5 29 29 H 1.00900 * 110.99789 * 31.73252 * 13 3 2 30 30 H 1.08996 * 109.47218 * 299.99749 * 16 14 13 31 31 H 1.09002 * 109.47032 * 59.99935 * 16 14 13 32 32 H 1.08996 * 109.46737 * 59.99831 * 17 16 14 33 33 H 1.09000 * 109.46902 * 180.02562 * 17 16 14 34 34 H 1.09002 * 109.46565 * 60.00293 * 19 18 17 35 35 H 1.08996 * 109.47369 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.46959 * 300.00979 * 19 18 17 37 37 H 0.96704 * 113.99704 * 179.97438 * 20 18 17 38 38 H 1.08993 * 109.47169 * 59.99431 * 21 18 17 39 39 H 1.08996 * 109.47218 * 179.97438 * 21 18 17 40 40 H 1.08993 * 109.47390 * 299.99889 * 22 21 18 41 41 H 1.09000 * 109.46646 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5968 1.9845 0.8354 5 6 3.5405 1.4448 0.1392 6 1 4.1537 1.8865 -0.6322 7 6 4.1306 0.8828 1.2515 8 7 3.3837 0.3452 2.1911 9 14 5.9906 0.8850 1.4238 10 1 6.5966 1.5449 0.2395 11 1 6.3729 1.6251 2.6531 12 1 6.4808 -0.5138 1.5154 13 7 1.6643 2.0948 -1.2615 14 6 1.5998 3.5536 -1.1011 15 1 2.3541 3.8737 -0.3823 16 6 1.8620 4.2270 -2.4496 17 6 1.7942 5.7464 -2.2827 18 6 0.4057 6.1422 -1.7762 19 6 -0.6527 5.6924 -2.7853 20 8 0.3423 7.5614 -1.6208 21 6 0.1436 5.4688 -0.4276 22 6 0.2113 3.9495 -0.5947 23 1 -0.3634 -1.0226 0.1014 24 1 -0.3633 0.5992 0.8349 25 1 -0.3634 0.4235 -0.9364 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.7988 -0.0498 2.9738 29 1 0.7906 1.7304 -1.6108 30 1 2.8509 3.9446 -2.8106 31 1 1.1077 3.9067 -3.1684 32 1 2.5482 6.0668 -1.5638 33 1 1.9805 6.2261 -3.2435 34 1 -0.6043 4.6100 -2.9042 35 1 -1.6417 5.9748 -2.4247 36 1 -0.4658 6.1722 -3.7461 37 1 -0.5118 7.8843 -1.3022 38 1 0.8975 5.7893 0.2912 39 1 -0.8454 5.7512 -0.0667 40 1 -0.5426 3.6290 -1.3135 41 1 0.0250 3.4697 0.3662 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:05 Heat of formation + Delta-G solvation = -77.168554 kcal Electronic energy + Delta-G solvation = -18661.854499 eV Core-core repulsion = 15961.401394 eV Total energy + Delta-G solvation = -2700.453105 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.56475 -36.68872 -34.70198 -32.16297 -31.07177 -30.57078 -28.70063 -26.81095 -25.29422 -22.77382 -22.48184 -20.91188 -19.63191 -18.56030 -16.80914 -16.18073 -15.49509 -14.90854 -14.73711 -14.31456 -13.97150 -13.48012 -13.06486 -12.86828 -12.56862 -12.29360 -11.99387 -11.97290 -11.77175 -11.64409 -11.25867 -11.19645 -10.90985 -10.80270 -10.77177 -10.58873 -10.28175 -9.93850 -9.81426 -9.69052 -9.64334 -9.35872 -9.00654 -8.33301 -7.15877 -5.94782 -3.98451 3.32635 3.40694 3.46142 4.23326 4.47043 4.80283 4.88995 5.07696 5.29240 5.34601 5.36956 5.50631 5.55834 5.75269 5.77382 5.85385 5.92453 6.02118 6.14525 6.15575 6.17652 6.21469 6.33002 6.38920 6.40645 6.42818 6.54476 6.78534 6.84983 6.87409 7.12006 7.21938 7.55285 7.70985 7.80607 7.95508 8.35698 8.43085 8.81067 9.10433 9.66668 11.10573 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026156 B = 0.006769 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.249140 B = 4135.471721 C = 4719.618887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.491 4.491 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.682 5.682 14 C 0.094 3.906 15 H 0.082 0.918 16 C -0.104 4.104 17 C -0.102 4.102 18 C 0.129 3.871 19 C -0.179 4.179 20 O -0.565 6.565 21 C -0.137 4.137 22 C -0.145 4.145 23 H 0.036 0.964 24 H 0.041 0.959 25 H 0.035 0.965 26 H 0.040 0.960 27 H 0.098 0.902 28 H 0.258 0.742 29 H 0.316 0.684 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.370 0.630 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.392 8.333 -6.563 13.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.530 4.530 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.311 5.311 14 C -0.017 4.017 15 H 0.100 0.900 16 C -0.142 4.142 17 C -0.141 4.141 18 C 0.089 3.911 19 C -0.236 4.236 20 O -0.371 6.371 21 C -0.176 4.176 22 C -0.184 4.184 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.133 0.867 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.217 0.783 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.084 8.169 -6.847 12.798 hybrid contribution -0.539 0.032 1.010 1.145 sum -7.623 8.201 -5.837 12.627 Atomic orbital electron populations 1.21874 0.99678 0.99625 0.99454 1.21765 0.91166 1.00525 1.03004 1.19164 0.95333 0.89848 0.84499 0.98030 1.21272 0.91384 1.36179 1.04126 0.92042 1.24959 0.98024 0.95725 0.95905 1.69885 1.34534 1.39736 1.09574 0.86519 0.85943 0.77571 0.77850 1.19775 1.21281 1.21169 1.60767 1.35269 1.02009 1.33078 1.21485 0.94674 0.89688 0.95883 0.89991 1.21557 1.02485 0.92083 0.98050 1.21455 0.94648 0.96723 1.01227 1.21237 0.96189 0.79742 0.93882 1.22565 0.98310 1.03063 0.99675 1.86551 1.39069 1.22007 1.89440 1.22139 1.01423 0.96667 0.97333 1.22321 0.99776 0.94640 1.01708 0.94481 0.93975 0.94648 0.94105 0.88334 0.93208 0.86704 0.90844 0.92347 0.91317 0.91822 0.90618 0.92958 0.92254 0.78319 0.91173 0.92573 0.92281 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.64 37.16 0.36 -2.48 16 2 C -0.13 -2.94 5.37 -26.74 -0.14 -3.09 16 3 C 0.22 5.33 1.84 -68.87 -0.13 5.21 16 4 H 0.00 0.06 7.21 -51.93 -0.37 -0.32 16 5 C -0.49 -13.45 8.46 -34.44 -0.29 -13.75 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.50 11.29 55.43 0.63 -24.87 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.68 -13.99 6.05 -100.96 -0.61 -14.60 16 14 C 0.09 1.69 2.27 -67.71 -0.15 1.54 16 15 H 0.08 1.74 7.60 -51.93 -0.39 1.34 16 16 C -0.10 -1.61 5.26 -26.73 -0.14 -1.75 16 17 C -0.10 -1.46 5.10 -26.73 -0.14 -1.59 16 18 C 0.13 1.67 1.15 -90.62 -0.10 1.57 16 19 C -0.18 -2.00 8.12 37.16 0.30 -1.70 16 20 O -0.57 -7.16 12.98 -35.23 -0.46 -7.62 16 21 C -0.14 -1.87 5.07 -26.73 -0.14 -2.01 16 22 C -0.15 -2.26 4.88 -26.73 -0.13 -2.39 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.03 0.60 6.65 -51.93 -0.35 0.25 16 26 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.32 5.94 6.32 -39.29 -0.25 5.69 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 0.84 6.43 -51.93 -0.33 0.50 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.88 4.81 -51.93 -0.25 0.63 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.37 3.20 9.05 45.56 0.41 3.62 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.84 6.41 -51.93 -0.33 0.51 16 41 H 0.06 1.11 7.51 -51.93 -0.39 0.72 16 LS Contribution 309.09 15.07 4.66 4.66 Total: -1.00 -28.70 309.09 -7.94 -36.64 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.34 Total: 8.28 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -0.80 Total: -19.04 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.02 Total: -39.47 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.46 Total: -7.62 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.70 -7.94 -36.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.528 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds