Wall clock time and date at job start Sun Mar 29 2020 23:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47314 * 2 1 4 4 H 1.09002 * 109.47255 * 54.37663 * 3 2 1 5 5 C 1.50697 * 109.47503 * 174.37613 * 3 2 1 6 6 H 1.07996 * 120.00153 * 119.99736 * 5 3 2 7 7 C 1.37882 * 120.00137 * 300.00534 * 5 3 2 8 8 N 1.31513 * 119.99330 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00341 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47065 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47198 * 119.99581 * 9 7 5 12 12 H 1.48501 * 109.46892 * 239.99835 * 9 7 5 13 13 N 1.46904 * 109.47666 * 294.37966 * 3 2 1 14 14 C 1.46897 * 111.00476 * 155.69079 * 13 3 2 15 15 H 1.08996 * 109.46746 * 33.69662 * 14 13 3 16 16 C 1.53000 * 109.46890 * 153.69869 * 14 13 3 17 17 C 1.53007 * 109.46836 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.46682 * 300.00013 * 17 16 14 19 19 C 1.53000 * 109.47457 * 299.99651 * 18 17 16 20 20 O 1.42902 * 109.46526 * 180.02562 * 18 17 16 21 21 C 1.53000 * 109.47496 * 60.00391 * 18 17 16 22 22 C 1.53000 * 109.46579 * 299.99407 * 21 18 17 23 23 H 1.08994 * 109.47449 * 185.66388 * 1 2 3 24 24 H 1.08998 * 109.47109 * 305.66590 * 1 2 3 25 25 H 1.09005 * 109.47287 * 65.66467 * 1 2 3 26 26 H 1.09002 * 109.46568 * 240.00131 * 2 1 3 27 27 H 1.08996 * 109.47352 * 120.00100 * 2 1 3 28 28 H 0.97004 * 119.99662 * 180.02562 * 8 7 5 29 29 H 1.00900 * 110.99789 * 31.73252 * 13 3 2 30 30 H 1.08996 * 109.47218 * 299.99749 * 16 14 13 31 31 H 1.09002 * 109.47032 * 59.99935 * 16 14 13 32 32 H 1.08996 * 109.46737 * 59.99831 * 17 16 14 33 33 H 1.09000 * 109.46902 * 180.02562 * 17 16 14 34 34 H 1.09002 * 109.46565 * 60.00293 * 19 18 17 35 35 H 1.08996 * 109.47369 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.46959 * 300.00979 * 19 18 17 37 37 H 0.96704 * 113.99704 * 179.97438 * 20 18 17 38 38 H 1.08993 * 109.47169 * 59.99431 * 21 18 17 39 39 H 1.08996 * 109.47218 * 179.97438 * 21 18 17 40 40 H 1.08993 * 109.47390 * 299.99889 * 22 21 18 41 41 H 1.09000 * 109.46646 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5968 1.9845 0.8354 5 6 3.5405 1.4448 0.1392 6 1 4.1537 1.8865 -0.6322 7 6 4.1306 0.8828 1.2515 8 7 3.3837 0.3452 2.1911 9 14 5.9906 0.8850 1.4238 10 1 6.5966 1.5449 0.2395 11 1 6.3729 1.6251 2.6531 12 1 6.4808 -0.5138 1.5154 13 7 1.6643 2.0948 -1.2615 14 6 1.5998 3.5536 -1.1011 15 1 2.3541 3.8737 -0.3823 16 6 1.8620 4.2270 -2.4496 17 6 1.7942 5.7464 -2.2827 18 6 0.4057 6.1422 -1.7762 19 6 -0.6527 5.6924 -2.7853 20 8 0.3423 7.5614 -1.6208 21 6 0.1436 5.4688 -0.4276 22 6 0.2113 3.9495 -0.5947 23 1 -0.3634 -1.0226 0.1014 24 1 -0.3633 0.5992 0.8349 25 1 -0.3634 0.4235 -0.9364 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.7988 -0.0498 2.9738 29 1 0.7906 1.7304 -1.6108 30 1 2.8509 3.9446 -2.8106 31 1 1.1077 3.9067 -3.1684 32 1 2.5482 6.0668 -1.5638 33 1 1.9805 6.2261 -3.2435 34 1 -0.6043 4.6100 -2.9042 35 1 -1.6417 5.9748 -2.4247 36 1 -0.4658 6.1722 -3.7461 37 1 -0.5118 7.8843 -1.3022 38 1 0.8975 5.7893 0.2912 39 1 -0.8454 5.7512 -0.0667 40 1 -0.5426 3.6290 -1.3135 41 1 0.0250 3.4697 0.3662 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:04 Heat of formation + Delta-G solvation = -97.184857 kcal Electronic energy + Delta-G solvation = -18662.722471 eV Core-core repulsion = 15961.401394 eV Total energy + Delta-G solvation = -2701.321077 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.75732 -38.20373 -36.14844 -34.06054 -32.62247 -31.78145 -30.00349 -28.45458 -26.77825 -24.57888 -23.70476 -22.25905 -21.49134 -19.79643 -18.29477 -17.85863 -16.81812 -16.66285 -15.96637 -15.82242 -15.52090 -14.79592 -14.62316 -14.48822 -13.87012 -13.72510 -13.51840 -13.15114 -13.09885 -12.96147 -12.80342 -12.62631 -12.52861 -12.41332 -12.25215 -12.01179 -11.93942 -11.68718 -11.52152 -11.16821 -11.06338 -10.86860 -10.62660 -10.43180 -8.89620 -8.06748 -6.18218 1.37969 1.40261 1.51934 2.43170 3.17718 3.24548 3.60970 3.77404 3.84599 4.13022 4.17872 4.30389 4.43843 4.51473 4.54655 4.55963 4.59214 4.71548 4.75177 4.84410 4.91766 4.99039 5.06374 5.12143 5.15036 5.20407 5.25927 5.28129 5.30255 5.40950 5.49758 5.57016 5.65768 5.78737 5.93165 6.39256 6.56876 6.93634 6.97117 7.08789 7.51079 8.96184 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026156 B = 0.006769 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.249140 B = 4135.471721 C = 4719.618887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.228 3.772 4 H -0.031 1.031 5 C -0.510 4.510 6 H 0.046 0.954 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.683 5.683 14 C 0.093 3.907 15 H 0.039 0.961 16 C -0.093 4.093 17 C -0.103 4.103 18 C 0.135 3.865 19 C -0.174 4.174 20 O -0.577 6.577 21 C -0.133 4.133 22 C -0.135 4.135 23 H 0.055 0.945 24 H 0.035 0.965 25 H 0.060 0.940 26 H 0.036 0.964 27 H 0.065 0.935 28 H 0.259 0.741 29 H 0.329 0.671 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.389 0.611 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.823 9.033 -7.932 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 C 0.120 3.880 4 H -0.013 1.013 5 C -0.548 4.548 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.204 1.204 13 N -0.313 5.313 14 C -0.017 4.017 15 H 0.057 0.943 16 C -0.131 4.131 17 C -0.141 4.141 18 C 0.095 3.905 19 C -0.231 4.231 20 O -0.385 6.385 21 C -0.172 4.172 22 C -0.174 4.174 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.239 0.761 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.537 8.884 -8.223 14.813 hybrid contribution -0.089 -0.138 1.443 1.452 sum -8.626 8.746 -6.780 14.031 Atomic orbital electron populations 1.21732 0.96141 1.01029 1.00548 1.21592 0.94355 0.99084 1.01054 1.18883 0.93614 0.90521 0.85010 1.01330 1.21539 0.93173 1.36161 1.03969 0.93535 1.25655 1.02077 0.95488 0.95684 1.70007 1.36015 1.40157 1.09869 0.85602 0.81143 0.77745 0.77723 1.19666 1.20850 1.20434 1.60656 1.36244 1.03417 1.31024 1.21461 0.95269 0.88339 0.96635 0.94286 1.21426 1.02210 0.92881 0.96560 1.21424 0.95533 0.95624 1.01496 1.21095 0.95738 0.80059 0.93635 1.22511 0.98506 1.02790 0.99317 1.86511 1.40892 1.21503 1.89622 1.22110 1.02201 0.95096 0.97769 1.22172 0.98336 0.96047 1.00887 0.92576 0.94583 0.92121 0.94561 0.91657 0.93149 0.85278 0.92505 0.90203 0.93331 0.90476 0.90918 0.90915 0.91579 0.76104 0.93396 0.89978 0.89860 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 9.64 71.98 0.69 -4.36 16 2 C -0.12 -5.77 5.37 30.59 0.16 -5.60 16 3 C 0.23 11.45 1.84 44.17 0.08 11.53 16 4 H -0.03 -1.73 7.21 -2.39 -0.02 -1.74 16 5 C -0.51 -28.90 8.46 25.60 0.22 -28.69 16 6 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 7 C 0.01 0.50 5.29 84.66 0.45 0.95 16 8 N -0.92 -53.66 11.29 21.45 0.24 -53.42 16 9 Si 0.95 45.14 29.54 68.60 2.03 47.17 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 N -0.68 -28.21 6.05 -473.32 -2.86 -31.07 16 14 C 0.09 3.43 2.27 44.92 0.10 3.53 16 15 H 0.04 1.75 7.60 -2.39 -0.02 1.73 16 16 C -0.09 -2.81 5.26 30.60 0.16 -2.65 16 17 C -0.10 -2.82 5.10 30.60 0.16 -2.66 16 18 C 0.13 3.17 1.15 -10.79 -0.01 3.15 16 19 C -0.17 -3.22 8.12 71.98 0.58 -2.64 16 20 O -0.58 -13.12 12.98 -148.98 -1.93 -15.05 16 21 C -0.13 -3.45 5.07 30.59 0.16 -3.29 16 22 C -0.14 -4.09 4.88 30.60 0.15 -3.94 16 23 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.91 6.65 -2.38 -0.02 1.90 16 26 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 3.54 5.94 -2.39 -0.01 3.52 16 28 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.33 11.92 6.32 -89.69 -0.57 11.36 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 31 H 0.08 2.09 6.43 -2.39 -0.02 2.07 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 1.40 4.81 -2.39 -0.01 1.39 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.39 5.45 9.05 -74.05 -0.67 4.78 16 38 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.08 2.13 6.41 -2.39 -0.02 2.11 16 41 H 0.04 1.41 7.51 -2.39 -0.02 1.39 16 Total: -1.00 -63.56 309.09 0.14 -63.42 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -0.23 Total: 23.63 kcal Atomic # 6 Polarization: -37.58 SS G_CDS: 2.90 Total: -34.68 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -2.62 Total: -84.49 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.93 Total: -15.05 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -63.56 0.14 -63.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.767 kcal (2) G-P(sol) polarization free energy of solvation -63.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds