Wall clock time and date at job start Sun Mar 29 2020 23:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 H 1.09000 * 109.47449 * 304.69446 * 3 2 1 5 5 C 1.50700 * 109.47413 * 184.68863 * 3 2 1 6 6 H 1.07997 * 120.00377 * 240.00094 * 5 3 2 7 7 C 1.37885 * 119.99557 * 60.27646 * 5 3 2 8 8 N 1.31508 * 120.00249 * 359.73022 * 7 5 3 9 9 Si 1.86800 * 119.99618 * 179.72351 * 7 5 3 10 10 H 1.48499 * 109.47435 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47032 * 120.00112 * 9 7 5 12 12 H 1.48501 * 109.47268 * 239.99909 * 9 7 5 13 13 N 1.46902 * 109.47044 * 64.68779 * 3 2 1 14 14 C 1.46897 * 111.00142 * 214.79399 * 13 3 2 15 15 H 1.08998 * 109.46967 * 33.01699 * 14 13 3 16 16 C 1.53000 * 109.47024 * 153.01641 * 14 13 3 17 17 C 1.52996 * 109.47230 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.46932 * 299.99749 * 17 16 14 19 19 C 1.53008 * 109.46687 * 179.97438 * 18 17 16 20 20 O 1.42896 * 109.47268 * 300.00064 * 18 17 16 21 21 C 1.53000 * 109.46958 * 60.00084 * 18 17 16 22 22 C 1.52996 * 109.47230 * 299.99733 * 21 18 17 23 23 H 1.09000 * 109.47003 * 174.47287 * 1 2 3 24 24 H 1.08999 * 109.46966 * 294.47600 * 1 2 3 25 25 H 1.09006 * 109.47105 * 54.47723 * 1 2 3 26 26 H 1.09006 * 109.47018 * 239.99985 * 2 1 3 27 27 H 1.09000 * 109.47271 * 120.00315 * 2 1 3 28 28 H 0.97003 * 120.00266 * 180.02562 * 8 7 5 29 29 H 1.00901 * 111.00121 * 338.75459 * 13 3 2 30 30 H 1.09003 * 109.46952 * 300.00536 * 16 14 13 31 31 H 1.09006 * 109.47465 * 59.99606 * 16 14 13 32 32 H 1.08998 * 109.46950 * 59.99942 * 17 16 14 33 33 H 1.09005 * 109.47191 * 179.97438 * 17 16 14 34 34 H 1.08993 * 109.47253 * 60.00559 * 19 18 17 35 35 H 1.09005 * 109.46544 * 180.02562 * 19 18 17 36 36 H 1.08996 * 109.47468 * 299.99732 * 19 18 17 37 37 H 0.96703 * 114.00000 * 180.02562 * 20 18 17 38 38 H 1.09007 * 109.46769 * 59.99978 * 21 18 17 39 39 H 1.09003 * 109.46952 * 179.97438 * 21 18 17 40 40 H 1.08996 * 109.47242 * 300.00507 * 22 21 18 41 41 H 1.08993 * 109.47234 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6097 1.9800 -0.8449 5 6 3.5426 1.4440 -0.1161 6 1 4.1439 1.8900 0.6622 7 6 4.1493 0.8811 -1.2190 8 7 3.4171 0.3382 -2.1669 9 14 6.0114 0.8900 -1.3666 10 1 6.5993 1.5555 -0.1764 11 1 6.5082 -0.5071 -1.4477 12 1 6.4073 1.6280 -2.5930 13 7 1.6450 2.1015 1.2520 14 6 1.3417 3.5211 1.0268 15 1 0.9114 3.6475 0.0334 16 6 0.3424 4.0025 2.0806 17 6 0.0260 5.4808 1.8457 18 6 1.3134 6.3009 1.9515 19 6 0.9971 7.7793 1.7159 20 8 1.8778 6.1356 3.2538 21 6 2.3128 5.8195 0.8977 22 6 2.6291 4.3411 1.1326 23 1 -0.3633 -1.0229 -0.0990 24 1 -0.3633 0.4258 0.9353 25 1 -0.3634 0.5971 -0.8364 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.8439 -0.0581 -2.9426 29 1 0.8629 1.6279 1.6789 30 1 -0.5749 3.4185 2.0050 31 1 0.7727 3.8760 3.0741 32 1 -0.4045 5.6068 0.8523 33 1 -0.6863 5.8237 2.5961 34 1 0.2850 8.1225 2.4663 35 1 1.9143 8.3634 1.7908 36 1 0.5669 7.9050 0.7223 37 1 2.6980 6.6288 3.3925 38 1 1.8822 5.9456 -0.0958 39 1 3.2297 6.4040 0.9728 40 1 3.0595 4.2151 2.1260 41 1 3.3407 3.9980 0.3817 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:07 Heat of formation + Delta-G solvation = -77.205112 kcal Electronic energy + Delta-G solvation = -18672.054112 eV Core-core repulsion = 15971.599421 eV Total energy + Delta-G solvation = -2700.454691 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.33133 -36.53432 -34.28571 -32.16738 -31.29901 -30.45013 -29.28243 -26.64063 -24.75531 -22.59701 -22.42139 -20.58379 -19.53802 -19.23374 -16.33764 -15.95212 -15.40608 -14.83555 -14.53973 -14.43922 -13.79664 -13.40461 -12.92729 -12.84183 -12.81713 -12.34710 -12.03439 -11.93543 -11.66607 -11.54535 -11.12245 -10.98492 -10.97302 -10.82379 -10.63351 -10.50303 -10.14679 -9.90379 -9.78058 -9.64228 -9.51041 -9.18565 -8.94108 -8.28088 -7.11665 -5.90862 -3.93341 3.33784 3.41926 3.47316 4.36311 4.49346 4.84245 4.93269 5.08701 5.28021 5.38996 5.46031 5.52500 5.70657 5.78316 5.87175 5.93013 5.96463 6.05902 6.13712 6.17697 6.19779 6.23600 6.32395 6.43976 6.48388 6.67962 6.73151 6.87278 7.01685 7.11171 7.16883 7.28182 7.57535 7.83696 7.84574 8.01027 8.43247 8.52462 8.85464 9.15437 9.70955 11.14606 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024065 B = 0.007285 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.259028 B = 3842.506092 C = 4655.869184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.218 3.782 4 H 0.005 0.995 5 C -0.483 4.483 6 H 0.063 0.937 7 C 0.052 3.948 8 N -0.899 5.899 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.683 5.683 14 C 0.101 3.899 15 H 0.029 0.971 16 C -0.119 4.119 17 C -0.099 4.099 18 C 0.130 3.870 19 C -0.177 4.177 20 O -0.554 6.554 21 C -0.144 4.144 22 C -0.100 4.100 23 H 0.036 0.964 24 H 0.034 0.966 25 H 0.041 0.959 26 H 0.099 0.901 27 H 0.040 0.960 28 H 0.257 0.743 29 H 0.318 0.682 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.370 0.630 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.530 10.654 6.015 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C 0.111 3.889 4 H 0.023 0.977 5 C -0.522 4.522 6 H 0.082 0.918 7 C -0.148 4.148 8 N -0.540 5.540 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.214 1.214 13 N -0.314 5.314 14 C -0.009 4.009 15 H 0.047 0.953 16 C -0.157 4.157 17 C -0.137 4.137 18 C 0.090 3.910 19 C -0.235 4.235 20 O -0.359 6.359 21 C -0.182 4.182 22 C -0.138 4.138 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.117 0.883 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.135 0.865 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.216 0.784 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.383 10.284 6.106 13.115 hybrid contribution 0.620 0.287 -0.857 1.096 sum -4.764 10.570 5.249 12.727 Atomic orbital electron populations 1.21880 0.99676 0.99617 0.99516 1.21854 0.91174 1.00847 1.03042 1.19255 0.95392 0.89622 0.84641 0.97742 1.21315 0.91293 1.35419 1.04165 0.91850 1.24976 0.97912 0.95916 0.95985 1.69883 1.34540 1.39819 1.09711 0.86548 0.86192 0.77554 0.77762 1.19776 1.21237 1.21371 1.60702 1.40530 1.00652 1.29564 1.21382 0.93926 0.90203 0.95423 0.95262 1.21702 0.98498 0.94380 1.01079 1.21451 0.95131 0.95624 1.01449 1.21196 0.93701 0.92998 0.83150 1.22502 1.01908 0.96836 1.02259 1.86557 1.43331 1.73775 1.32275 1.22260 0.98481 0.98693 0.98798 1.21449 0.98363 0.90989 1.03018 0.94449 0.94660 0.93968 0.88318 0.94125 0.93287 0.86458 0.93042 0.90662 0.91213 0.91940 0.92230 0.92594 0.91802 0.78362 0.91654 0.92318 0.91639 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.67 37.16 0.36 -2.58 16 2 C -0.13 -3.11 5.29 -26.73 -0.14 -3.25 16 3 C 0.22 5.45 2.04 -68.87 -0.14 5.30 16 4 H 0.01 0.14 7.24 -51.93 -0.38 -0.24 16 5 C -0.48 -13.27 7.56 -34.44 -0.26 -13.53 16 6 H 0.06 1.78 7.59 -52.49 -0.40 1.39 16 7 C 0.05 1.44 5.30 -17.82 -0.09 1.34 16 8 N -0.90 -25.74 11.30 55.43 0.63 -25.11 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 N -0.68 -14.71 6.16 -100.96 -0.62 -15.33 16 14 C 0.10 1.92 2.49 -67.71 -0.17 1.75 16 15 H 0.03 0.60 7.31 -51.93 -0.38 0.22 16 16 C -0.12 -1.88 5.03 -26.73 -0.13 -2.02 16 17 C -0.10 -1.33 4.94 -26.73 -0.13 -1.47 16 18 C 0.13 1.68 0.98 -90.61 -0.09 1.59 16 19 C -0.18 -1.84 8.82 37.16 0.33 -1.51 16 20 O -0.55 -7.42 11.63 -35.23 -0.41 -7.83 16 21 C -0.14 -2.09 4.91 -26.73 -0.13 -2.22 16 22 C -0.10 -1.85 5.16 -26.73 -0.14 -1.99 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.03 0.62 6.66 -51.93 -0.35 0.28 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.10 2.64 5.97 -51.93 -0.31 2.33 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.32 6.37 6.11 -39.29 -0.24 6.13 16 30 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 31 H 0.07 1.28 7.68 -51.93 -0.40 0.88 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.37 3.66 9.05 45.56 0.41 4.07 16 38 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.26 7.68 -51.93 -0.40 0.86 16 41 H 0.08 1.71 6.78 -51.93 -0.35 1.35 16 LS Contribution 312.06 15.07 4.70 4.70 Total: -1.00 -29.05 312.06 -8.04 -37.09 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.57 Total: 8.46 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -0.74 Total: -18.58 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.00 Total: -40.44 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.41 Total: -7.83 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.05 -8.04 -37.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.116 kcal (2) G-P(sol) polarization free energy of solvation -29.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds