Wall clock time and date at job start Sun Mar 29 2020 23:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47057 * 2 1 4 4 H 1.08999 * 109.47666 * 305.64761 * 3 2 1 5 5 C 1.50700 * 109.46887 * 185.64534 * 3 2 1 6 6 H 1.08009 * 119.99752 * 240.00303 * 5 3 2 7 7 C 1.37871 * 120.00109 * 60.00409 * 5 3 2 8 8 N 1.31511 * 120.00106 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00216 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46999 * 59.99538 * 9 7 5 11 11 H 1.48494 * 109.47064 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46674 * 300.00059 * 9 7 5 13 13 N 1.46908 * 109.46848 * 65.64532 * 3 2 1 14 14 C 1.46895 * 110.99643 * 204.24001 * 13 3 2 15 15 H 1.08997 * 109.48009 * 325.98693 * 14 13 3 16 16 C 1.53008 * 109.46805 * 85.99018 * 14 13 3 17 17 C 1.52997 * 109.47197 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.47272 * 300.00147 * 17 16 14 19 19 H 1.09005 * 109.46739 * 300.00268 * 18 17 16 20 20 O 1.42895 * 109.47491 * 180.02562 * 18 17 16 21 21 C 1.42901 * 114.00075 * 89.99190 * 20 18 17 22 22 C 1.52998 * 109.47046 * 59.99670 * 18 17 16 23 23 C 1.52997 * 109.47355 * 300.00280 * 22 18 17 24 24 H 1.08996 * 109.47442 * 173.69225 * 1 2 3 25 25 H 1.09005 * 109.46723 * 293.69591 * 1 2 3 26 26 H 1.09001 * 109.46917 * 53.68793 * 1 2 3 27 27 H 1.08999 * 109.46750 * 240.00537 * 2 1 3 28 28 H 1.08993 * 109.47035 * 120.00117 * 2 1 3 29 29 H 0.96996 * 120.00520 * 179.97438 * 8 7 5 30 30 H 1.00891 * 110.99990 * 328.20176 * 13 3 2 31 31 H 1.09000 * 109.46607 * 299.99581 * 16 14 13 32 32 H 1.09003 * 109.47214 * 59.99820 * 16 14 13 33 33 H 1.08994 * 109.47063 * 59.99674 * 17 16 14 34 34 H 1.08996 * 109.47469 * 179.97438 * 17 16 14 35 35 H 1.09001 * 109.46852 * 179.97438 * 21 20 18 36 36 H 1.08996 * 109.47388 * 300.00684 * 21 20 18 37 37 H 1.09008 * 109.46432 * 60.00634 * 21 20 18 38 38 H 1.09006 * 109.46933 * 180.02562 * 22 18 17 39 39 H 1.08994 * 109.47306 * 60.00463 * 22 18 17 40 40 H 1.08996 * 109.47469 * 180.02562 * 23 22 18 41 41 H 1.09005 * 109.47458 * 300.00031 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9848 -0.8351 5 6 3.5405 1.4448 -0.1398 6 1 4.1541 1.8864 0.6317 7 6 4.1301 0.8831 -1.2523 8 7 3.3831 0.3449 -2.1914 9 14 5.9901 0.8852 -1.4253 10 1 6.5939 0.1461 -0.2875 11 1 6.3694 0.2257 -2.7005 12 1 6.4856 2.2852 -1.4248 13 7 1.6647 2.0945 1.2618 14 6 1.6017 3.5534 1.1020 15 1 2.3600 3.8739 0.3878 16 6 0.2164 3.9507 0.5878 17 6 0.1505 5.4702 0.4219 18 6 0.4051 6.1423 1.7727 19 1 -0.3533 5.8214 2.4869 20 8 0.3429 7.5615 1.6180 21 6 -0.9623 8.1105 1.8102 22 6 1.7903 5.7450 2.2869 23 6 1.8562 4.2255 2.4528 24 1 -0.3634 -1.0214 -0.1129 25 1 -0.3633 0.4130 0.9411 26 1 -0.3633 0.6086 -0.8281 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.7978 -0.0499 -2.9743 30 1 0.7907 1.7308 1.6108 31 1 0.0350 3.4716 -0.3743 32 1 -0.5420 3.6303 1.3021 33 1 0.9089 5.7910 -0.2921 34 1 -0.8362 5.7532 0.0552 35 1 -0.9251 9.1916 1.6762 36 1 -1.6494 7.6772 1.0834 37 1 -1.3079 7.8814 2.8184 38 1 1.9715 6.2234 3.2494 39 1 2.5487 6.0658 1.5729 40 1 2.8428 3.9424 2.8195 41 1 1.0978 3.9046 3.1669 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154447.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:16 Heat of formation + Delta-G solvation = -72.029035 kcal Electronic energy + Delta-G solvation = -18359.979087 eV Core-core repulsion = 15659.748848 eV Total energy + Delta-G solvation = -2700.230239 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.16541 -37.09156 -35.00599 -32.12161 -30.92963 -30.49729 -28.00628 -26.54432 -25.43497 -22.82188 -22.34364 -21.13552 -19.81260 -19.25380 -16.53520 -16.17280 -15.73698 -15.08435 -14.88913 -14.46201 -13.91068 -13.73076 -13.11220 -13.04898 -12.64541 -12.60025 -12.24038 -11.96948 -11.73592 -11.64163 -11.16441 -10.86334 -10.82685 -10.77735 -10.70409 -10.62402 -10.34964 -10.04310 -9.92104 -9.65340 -9.46207 -9.29830 -9.00764 -8.31345 -7.14746 -5.93058 -3.96991 3.36805 3.40720 3.44386 3.78317 4.48026 4.89389 4.95724 5.15099 5.22441 5.28001 5.35492 5.41787 5.51489 5.52555 5.63514 5.76367 5.77806 5.84249 6.13301 6.16559 6.18609 6.22654 6.27591 6.34785 6.41658 6.43300 6.52151 6.78668 6.85646 6.87490 7.13326 7.23087 7.26799 7.56601 7.81834 7.96321 8.37015 8.44384 8.82456 9.11019 9.67974 11.12198 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026151 B = 0.006154 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.446002 B = 4549.082330 C = 5111.438410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.682 5.682 14 C 0.093 3.907 15 H 0.083 0.917 16 C -0.143 4.143 17 C -0.134 4.134 18 C 0.091 3.909 19 H 0.056 0.944 20 O -0.389 6.389 21 C 0.032 3.968 22 C -0.114 4.114 23 C -0.101 4.101 24 H 0.036 0.964 25 H 0.034 0.966 26 H 0.041 0.959 27 H 0.099 0.901 28 H 0.040 0.960 29 H 0.259 0.741 30 H 0.316 0.684 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.333 9.358 6.834 14.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.311 5.311 14 C -0.018 4.018 15 H 0.101 0.899 16 C -0.183 4.183 17 C -0.172 4.172 18 C 0.033 3.967 19 H 0.074 0.926 20 O -0.308 6.308 21 C -0.065 4.065 22 C -0.152 4.152 23 C -0.140 4.140 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.117 0.883 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.133 0.867 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.488 9.346 6.848 13.796 hybrid contribution -0.239 -0.081 -0.712 0.755 sum -7.727 9.265 6.137 13.536 Atomic orbital electron populations 1.21878 0.99692 0.99628 0.99447 1.21767 0.91152 1.00536 1.03000 1.19159 0.95307 0.89839 0.84492 0.98029 1.21189 0.91358 1.36404 1.04139 0.92165 1.24947 0.97990 0.95696 0.95885 1.69859 1.34714 1.39586 1.09577 0.86629 0.85934 0.78134 0.77088 1.20339 1.21513 1.20434 1.60769 1.35265 1.02037 1.33080 1.21497 0.94770 0.89693 0.95842 0.89856 1.22266 0.99634 0.94677 1.01710 1.21950 1.01587 0.96003 0.97707 1.22231 0.98319 0.79866 0.96235 0.92584 1.87905 1.28944 1.21722 1.92186 1.22731 0.85273 0.99098 0.99379 1.21599 0.95650 0.96761 1.01187 1.21481 1.02437 0.92110 0.97943 0.94486 0.94652 0.93972 0.88325 0.94113 0.93097 0.86691 0.91626 0.92732 0.91044 0.92703 0.90032 0.94266 0.94357 0.91850 0.91065 0.90745 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.63 37.16 0.36 -2.51 16 2 C -0.13 -2.96 5.37 -26.73 -0.14 -3.10 16 3 C 0.22 5.37 1.85 -68.86 -0.13 5.25 16 4 H 0.00 0.06 7.19 -51.93 -0.37 -0.32 16 5 C -0.49 -13.51 8.46 -34.44 -0.29 -13.80 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.53 11.29 55.43 0.63 -24.91 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.68 -14.12 6.04 -100.95 -0.61 -14.73 16 14 C 0.09 1.70 2.27 -67.71 -0.15 1.54 16 15 H 0.08 1.77 7.60 -51.93 -0.39 1.38 16 16 C -0.14 -2.29 5.16 -26.73 -0.14 -2.43 16 17 C -0.13 -1.93 5.54 -26.73 -0.15 -2.08 16 18 C 0.09 1.23 2.61 -26.73 -0.07 1.16 16 19 H 0.06 0.70 7.79 -51.93 -0.40 0.30 16 20 O -0.39 -5.34 10.35 -35.23 -0.36 -5.70 16 21 C 0.03 0.32 10.82 101.05 1.09 1.41 16 22 C -0.11 -1.60 5.57 -26.73 -0.15 -1.75 16 23 C -0.10 -1.58 5.53 -26.73 -0.15 -1.72 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.03 0.60 6.68 -51.93 -0.35 0.26 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.10 2.61 5.94 -51.93 -0.31 2.30 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.32 6.01 6.34 -39.30 -0.25 5.76 16 31 H 0.07 1.16 7.49 -51.93 -0.39 0.77 16 32 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.72 7.87 -51.93 -0.41 0.31 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.04 0.37 7.87 -51.93 -0.41 -0.04 16 37 H 0.04 0.34 8.09 -51.92 -0.42 -0.08 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 316.99 15.07 4.78 4.78 Total: -1.00 -28.25 316.99 -8.08 -36.33 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.47 Total: 4.25 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -0.01 Total: -16.60 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.02 Total: -39.64 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.36 Total: -5.70 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.25 -8.08 -36.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154447.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.698 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds