Wall clock time and date at job start Sun Mar 29 2020 23:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47057 * 2 1 4 4 H 1.08999 * 109.47666 * 305.64761 * 3 2 1 5 5 C 1.50700 * 109.46887 * 185.64534 * 3 2 1 6 6 H 1.08009 * 119.99752 * 240.00303 * 5 3 2 7 7 C 1.37871 * 120.00109 * 60.00409 * 5 3 2 8 8 N 1.31511 * 120.00106 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00216 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46999 * 59.99538 * 9 7 5 11 11 H 1.48494 * 109.47064 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46674 * 300.00059 * 9 7 5 13 13 N 1.46908 * 109.46848 * 65.64532 * 3 2 1 14 14 C 1.46895 * 110.99643 * 204.24001 * 13 3 2 15 15 H 1.08997 * 109.48009 * 325.98693 * 14 13 3 16 16 C 1.53008 * 109.46805 * 85.99018 * 14 13 3 17 17 C 1.52997 * 109.47197 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.47272 * 300.00147 * 17 16 14 19 19 H 1.09005 * 109.46739 * 300.00268 * 18 17 16 20 20 O 1.42895 * 109.47491 * 180.02562 * 18 17 16 21 21 C 1.42901 * 114.00075 * 89.99190 * 20 18 17 22 22 C 1.52998 * 109.47046 * 59.99670 * 18 17 16 23 23 C 1.52997 * 109.47355 * 300.00280 * 22 18 17 24 24 H 1.08996 * 109.47442 * 173.69225 * 1 2 3 25 25 H 1.09005 * 109.46723 * 293.69591 * 1 2 3 26 26 H 1.09001 * 109.46917 * 53.68793 * 1 2 3 27 27 H 1.08999 * 109.46750 * 240.00537 * 2 1 3 28 28 H 1.08993 * 109.47035 * 120.00117 * 2 1 3 29 29 H 0.96996 * 120.00520 * 179.97438 * 8 7 5 30 30 H 1.00891 * 110.99990 * 328.20176 * 13 3 2 31 31 H 1.09000 * 109.46607 * 299.99581 * 16 14 13 32 32 H 1.09003 * 109.47214 * 59.99820 * 16 14 13 33 33 H 1.08994 * 109.47063 * 59.99674 * 17 16 14 34 34 H 1.08996 * 109.47469 * 179.97438 * 17 16 14 35 35 H 1.09001 * 109.46852 * 179.97438 * 21 20 18 36 36 H 1.08996 * 109.47388 * 300.00684 * 21 20 18 37 37 H 1.09008 * 109.46432 * 60.00634 * 21 20 18 38 38 H 1.09006 * 109.46933 * 180.02562 * 22 18 17 39 39 H 1.08994 * 109.47306 * 60.00463 * 22 18 17 40 40 H 1.08996 * 109.47469 * 180.02562 * 23 22 18 41 41 H 1.09005 * 109.47458 * 300.00031 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9848 -0.8351 5 6 3.5405 1.4448 -0.1398 6 1 4.1541 1.8864 0.6317 7 6 4.1301 0.8831 -1.2523 8 7 3.3831 0.3449 -2.1914 9 14 5.9901 0.8852 -1.4253 10 1 6.5939 0.1461 -0.2875 11 1 6.3694 0.2257 -2.7005 12 1 6.4856 2.2852 -1.4248 13 7 1.6647 2.0945 1.2618 14 6 1.6017 3.5534 1.1020 15 1 2.3600 3.8739 0.3878 16 6 0.2164 3.9507 0.5878 17 6 0.1505 5.4702 0.4219 18 6 0.4051 6.1423 1.7727 19 1 -0.3533 5.8214 2.4869 20 8 0.3429 7.5615 1.6180 21 6 -0.9623 8.1105 1.8102 22 6 1.7903 5.7450 2.2869 23 6 1.8562 4.2255 2.4528 24 1 -0.3634 -1.0214 -0.1129 25 1 -0.3633 0.4130 0.9411 26 1 -0.3633 0.6086 -0.8281 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.7978 -0.0499 -2.9743 30 1 0.7907 1.7308 1.6108 31 1 0.0350 3.4716 -0.3743 32 1 -0.5420 3.6303 1.3021 33 1 0.9089 5.7910 -0.2921 34 1 -0.8362 5.7532 0.0552 35 1 -0.9251 9.1916 1.6762 36 1 -1.6494 7.6772 1.0834 37 1 -1.3079 7.8814 2.8184 38 1 1.9715 6.2234 3.2494 39 1 2.5487 6.0658 1.5729 40 1 2.8428 3.9424 2.8195 41 1 1.0978 3.9046 3.1669 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154447.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:16 Heat of formation + Delta-G solvation = -89.616129 kcal Electronic energy + Delta-G solvation = -18360.741720 eV Core-core repulsion = 15659.748848 eV Total energy + Delta-G solvation = -2700.992873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37971 -38.46966 -36.56819 -34.07085 -32.52535 -31.72801 -29.47085 -27.98746 -26.78590 -24.62560 -23.59527 -22.43286 -21.53881 -20.72986 -18.27841 -17.57244 -16.95242 -16.79204 -16.03968 -15.92040 -15.59810 -15.03285 -14.66526 -14.47975 -14.13551 -13.97034 -13.62224 -13.32156 -13.14721 -13.08436 -12.83241 -12.63712 -12.55338 -12.07373 -12.05392 -11.95034 -11.89304 -11.76295 -11.51310 -11.32334 -11.11355 -10.89947 -10.41597 -10.38547 -8.89451 -8.05057 -6.16785 1.41381 1.42507 1.50224 2.44490 2.82738 3.19777 3.63439 3.75120 3.85930 4.19242 4.22593 4.33518 4.47139 4.51451 4.53665 4.55742 4.57147 4.59227 4.63240 4.72501 4.82533 4.86646 4.95181 5.06099 5.08187 5.13899 5.20629 5.24882 5.26296 5.39819 5.45616 5.52025 5.66055 5.79295 5.93676 6.32757 6.40025 6.57552 6.97675 7.09144 7.52347 8.97545 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026151 B = 0.006154 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.446002 B = 4549.082330 C = 5111.438410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.228 3.772 4 H -0.032 1.032 5 C -0.511 4.511 6 H 0.047 0.953 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.683 5.683 14 C 0.092 3.908 15 H 0.041 0.959 16 C -0.133 4.133 17 C -0.130 4.130 18 C 0.096 3.904 19 H 0.077 0.923 20 O -0.409 6.409 21 C 0.024 3.976 22 C -0.110 4.110 23 C -0.091 4.091 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.035 0.965 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.259 0.741 30 H 0.328 0.672 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.524 10.108 8.387 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 C 0.120 3.880 4 H -0.014 1.014 5 C -0.550 4.550 6 H 0.065 0.935 7 C -0.188 4.188 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.202 1.202 13 N -0.313 5.313 14 C -0.018 4.018 15 H 0.060 0.940 16 C -0.173 4.173 17 C -0.168 4.168 18 C 0.039 3.961 19 H 0.095 0.905 20 O -0.329 6.329 21 C -0.072 4.072 22 C -0.148 4.148 23 C -0.129 4.129 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.692 10.110 8.415 15.767 hybrid contribution 0.112 -0.265 -1.194 1.228 sum -8.581 9.845 7.221 14.923 Atomic orbital electron populations 1.21736 0.96209 1.00998 1.00529 1.21595 0.94293 0.99118 1.01069 1.18885 0.93666 0.90492 0.84986 1.01410 1.21473 0.93103 1.36373 1.04030 0.93454 1.25650 1.02080 0.95442 0.95651 1.69989 1.36183 1.40027 1.09844 0.85706 0.81095 0.78131 0.77243 1.19781 1.20900 1.20198 1.60669 1.36199 1.03431 1.30996 1.21487 0.95162 0.88369 0.96821 0.94014 1.22109 0.98444 0.95811 1.00896 1.21901 1.01878 0.94732 0.98312 1.22126 0.98166 0.80161 0.95638 0.90463 1.87881 1.31180 1.21427 1.92370 1.22972 0.83812 0.99940 1.00504 1.21542 0.95957 0.95551 1.01785 1.21357 1.02349 0.92978 0.96262 0.92583 0.92144 0.94629 0.91622 0.94551 0.93155 0.85305 0.93984 0.90325 0.93217 0.90942 0.88560 0.93663 0.92810 0.89920 0.92885 0.92104 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 9.63 71.98 0.69 -4.42 16 2 C -0.12 -5.79 5.37 30.60 0.16 -5.62 16 3 C 0.23 11.49 1.85 44.17 0.08 11.57 16 4 H -0.03 -1.78 7.19 -2.39 -0.02 -1.80 16 5 C -0.51 -28.94 8.46 25.60 0.22 -28.73 16 6 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 7 C 0.01 0.55 5.29 84.65 0.45 1.00 16 8 N -0.92 -53.74 11.29 21.44 0.24 -53.50 16 9 Si 0.95 45.05 29.54 68.60 2.03 47.08 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.68 -28.31 6.04 -473.29 -2.86 -31.17 16 14 C 0.09 3.39 2.27 44.92 0.10 3.50 16 15 H 0.04 1.87 7.60 -2.39 -0.02 1.85 16 16 C -0.13 -4.16 5.16 30.60 0.16 -4.00 16 17 C -0.13 -3.59 5.54 30.60 0.17 -3.42 16 18 C 0.10 2.38 2.61 30.60 0.08 2.46 16 19 H 0.08 1.62 7.79 -2.38 -0.02 1.60 16 20 O -0.41 -10.30 10.35 -148.98 -1.54 -11.84 16 21 C 0.02 0.41 10.82 113.37 1.23 1.63 16 22 C -0.11 -2.94 5.57 30.59 0.17 -2.77 16 23 C -0.09 -2.73 5.53 30.59 0.17 -2.56 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.06 1.93 6.68 -2.38 -0.02 1.91 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 3.56 5.94 -2.39 -0.01 3.55 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.33 12.02 6.34 -89.70 -0.57 11.45 16 31 H 0.04 1.50 7.49 -2.39 -0.02 1.48 16 32 H 0.08 2.08 8.13 -2.39 -0.02 2.06 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.75 7.87 -2.39 -0.02 1.73 16 35 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.04 0.72 7.87 -2.39 -0.02 0.70 16 37 H 0.05 0.76 8.09 -2.38 -0.02 0.74 16 38 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -62.34 316.99 1.95 -60.39 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.41 Total: 20.39 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 3.68 Total: -31.36 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -2.62 Total: -84.67 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -1.54 Total: -11.84 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -62.34 1.95 -60.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154447.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.223 kcal (2) G-P(sol) polarization free energy of solvation -62.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds