Wall clock time and date at job start Sun Mar 29 2020 23:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47089 * 2 1 4 4 H 1.08998 * 109.47320 * 304.09886 * 3 2 1 5 5 C 1.50709 * 109.46958 * 184.09966 * 3 2 1 6 6 H 1.08000 * 119.99992 * 239.99868 * 5 3 2 7 7 C 1.37883 * 119.99540 * 60.00201 * 5 3 2 8 8 N 1.31506 * 120.00333 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99292 * 180.27373 * 7 5 3 10 10 H 1.48504 * 109.46885 * 179.72379 * 9 7 5 11 11 H 1.48497 * 109.47543 * 299.72113 * 9 7 5 12 12 H 1.48497 * 109.47319 * 59.72709 * 9 7 5 13 13 N 1.46900 * 109.47276 * 64.10455 * 3 2 1 14 14 C 1.46903 * 111.00010 * 203.97106 * 13 3 2 15 15 H 1.08996 * 109.46926 * 325.63419 * 14 13 3 16 16 C 1.52998 * 109.46874 * 85.63157 * 14 13 3 17 17 C 1.53004 * 109.46882 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47194 * 300.00478 * 17 16 14 19 19 H 1.09004 * 109.46857 * 299.99551 * 18 17 16 20 20 C 1.53000 * 109.46723 * 179.97438 * 18 17 16 21 21 O 1.42906 * 109.47214 * 65.00135 * 20 18 17 22 22 C 1.52991 * 109.47023 * 59.99787 * 18 17 16 23 23 C 1.52996 * 109.46870 * 205.63176 * 14 13 3 24 24 H 1.09005 * 109.47253 * 174.92847 * 1 2 3 25 25 H 1.08993 * 109.47628 * 294.92508 * 1 2 3 26 26 H 1.08998 * 109.47276 * 54.93199 * 1 2 3 27 27 H 1.08997 * 109.47509 * 239.99470 * 2 1 3 28 28 H 1.09007 * 109.46990 * 120.00048 * 2 1 3 29 29 H 0.97002 * 119.99950 * 179.97438 * 8 7 5 30 30 H 1.00900 * 111.00091 * 80.01188 * 13 3 2 31 31 H 1.08998 * 109.47567 * 299.99961 * 16 14 13 32 32 H 1.09004 * 109.47351 * 60.00105 * 16 14 13 33 33 H 1.09001 * 109.47256 * 179.97438 * 17 16 14 34 34 H 1.08996 * 109.46731 * 60.00376 * 17 16 14 35 35 H 1.09004 * 109.46988 * 184.99669 * 20 18 17 36 36 H 1.08995 * 109.47380 * 304.99840 * 20 18 17 37 37 H 0.96698 * 114.00056 * 179.97438 * 21 20 18 38 38 H 1.09004 * 109.46593 * 179.97438 * 22 18 17 39 39 H 1.09000 * 109.47265 * 60.00623 * 22 18 17 40 40 H 1.08996 * 109.47545 * 299.99864 * 23 14 13 41 41 H 1.09002 * 109.47070 * 60.00648 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6179 1.9771 -0.8510 5 6 3.5436 1.4436 -0.1016 6 1 4.1374 1.8923 0.6811 7 6 4.1612 0.8720 -1.1938 8 7 3.4382 0.3253 -2.1466 9 14 6.0251 0.8667 -1.3160 10 1 6.4369 0.1913 -2.5729 11 1 6.5251 2.2649 -1.3187 12 1 6.5953 0.1394 -0.1536 13 7 1.6329 2.1058 1.2459 14 6 1.5803 3.5637 1.0733 15 1 2.3634 3.8762 0.3825 16 6 0.2146 3.9615 0.5098 17 6 0.1596 5.4800 0.3306 18 6 0.3711 6.1613 1.6841 19 1 -0.4121 5.8484 2.3747 20 6 0.3167 7.6798 1.5047 21 8 -0.9957 8.0636 1.0892 22 6 1.7367 5.7634 2.2474 23 6 1.7920 4.2454 2.4265 24 1 -0.3634 -1.0237 -0.0908 25 1 -0.3634 0.4330 0.9319 26 1 -0.3634 0.5904 -0.8411 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8727 -0.0766 -2.9152 30 1 2.2458 1.8536 2.0068 31 1 0.0637 3.4758 -0.4542 32 1 -0.5685 3.6489 1.2006 33 1 -0.8132 5.7634 -0.0712 34 1 0.9427 5.7929 -0.3600 35 1 0.5551 8.1662 2.4506 36 1 1.0404 7.9824 0.7480 37 1 -1.1034 9.0153 0.9561 38 1 1.8876 6.2492 3.2115 39 1 2.5199 6.0764 1.5569 40 1 1.0089 3.9329 3.1173 41 1 2.7650 3.9620 2.8278 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154471.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:09 Heat of formation + Delta-G solvation = -86.394015 kcal Electronic energy + Delta-G solvation = -18312.738962 eV Core-core repulsion = 15611.885810 eV Total energy + Delta-G solvation = -2700.853151 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.86160 -36.75762 -35.24702 -32.48139 -31.24175 -30.40039 -28.96289 -26.19463 -24.22716 -22.68767 -22.23878 -20.43750 -19.40054 -19.20051 -17.30653 -16.51311 -15.25637 -15.02841 -14.70805 -14.30898 -13.84013 -13.67918 -13.22277 -12.93633 -12.68896 -12.38472 -11.89942 -11.76942 -11.56046 -11.24934 -11.10573 -10.97796 -10.77741 -10.71195 -10.63255 -10.33465 -10.08129 -10.04049 -9.98718 -9.60170 -9.45484 -9.33690 -8.95955 -8.33557 -7.17148 -5.96074 -4.09156 3.28729 3.34147 3.36267 4.17764 4.41249 4.85268 4.99014 5.12686 5.25978 5.31141 5.37074 5.53754 5.66498 5.79759 5.85144 5.91940 5.95388 6.00621 6.26162 6.29427 6.44751 6.48465 6.51476 6.55201 6.58879 6.72389 6.77809 6.88135 7.02385 7.19685 7.23325 7.51478 7.55511 7.65776 7.81929 8.14550 8.23136 8.40848 8.74935 9.04922 9.58237 11.03617 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025327 B = 0.006140 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.258689 B = 4558.832942 C = 5085.198431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.544 4.544 6 H 0.051 0.949 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.287 1.287 11 H -0.279 1.279 12 H -0.278 1.278 13 N -0.687 5.687 14 C 0.093 3.907 15 H 0.046 0.954 16 C -0.103 4.103 17 C -0.108 4.108 18 C -0.085 4.085 19 H 0.075 0.925 20 C 0.079 3.921 21 O -0.572 6.572 22 C -0.108 4.108 23 C -0.116 4.116 24 H 0.023 0.977 25 H 0.046 0.954 26 H 0.036 0.964 27 H 0.089 0.911 28 H 0.029 0.971 29 H 0.261 0.739 30 H 0.326 0.674 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.041 0.959 36 H 0.044 0.956 37 H 0.374 0.626 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.033 11.567 6.648 14.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.583 4.583 6 H 0.069 0.931 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.212 1.212 11 H -0.205 1.205 12 H -0.203 1.203 13 N -0.316 5.316 14 C -0.017 4.017 15 H 0.064 0.936 16 C -0.141 4.141 17 C -0.146 4.146 18 C -0.103 4.103 19 H 0.093 0.907 20 C 0.002 3.998 21 O -0.377 6.377 22 C -0.147 4.147 23 C -0.154 4.154 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.142 0.858 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.220 0.780 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.787 10.708 6.382 13.744 hybrid contribution 2.268 0.802 -0.238 2.417 sum -3.520 11.511 6.144 13.514 Atomic orbital electron populations 1.21680 0.99009 0.98137 1.00400 1.21495 0.92075 0.99390 1.01540 1.19162 0.92382 0.91028 0.86653 0.94934 1.21856 0.92859 1.37857 1.05759 0.93059 1.24927 0.97812 0.95072 0.95690 1.69867 1.34909 1.38009 1.09571 0.86745 0.86293 0.78100 0.77345 1.21249 1.20492 1.20318 1.60917 1.56438 1.05112 1.09142 1.21314 0.96114 0.89567 0.94738 0.93624 1.21499 0.97775 0.93572 1.01248 1.21517 1.01523 0.95890 0.95696 1.21154 0.98142 0.92366 0.98683 0.90688 1.22301 0.83796 0.96148 0.97596 1.86514 1.31743 1.28379 1.91055 1.21465 0.96198 0.96798 1.00204 1.21668 1.01410 0.93936 0.98425 0.95815 0.93449 0.94496 0.89306 0.95227 0.92880 0.85772 0.92057 0.92258 0.91838 0.92538 0.94099 0.93770 0.78007 0.92429 0.91946 0.91800 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.73 37.16 0.36 -2.48 16 2 C -0.11 -2.58 5.44 -26.73 -0.15 -2.73 16 3 C 0.22 5.35 1.80 -68.86 -0.12 5.22 16 4 H 0.03 0.90 7.16 -51.93 -0.37 0.53 16 5 C -0.54 -14.68 8.22 -34.43 -0.28 -14.96 16 6 H 0.05 1.37 7.76 -52.49 -0.41 0.97 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -25.17 11.29 55.43 0.63 -24.55 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 13 N -0.69 -14.39 5.56 -100.95 -0.56 -14.95 16 14 C 0.09 1.74 2.30 -67.71 -0.16 1.58 16 15 H 0.05 0.98 7.59 -51.93 -0.39 0.59 16 16 C -0.10 -1.79 5.42 -26.73 -0.14 -1.94 16 17 C -0.11 -1.63 5.10 -26.73 -0.14 -1.76 16 18 C -0.08 -1.11 2.43 -90.62 -0.22 -1.33 16 19 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 20 C 0.08 0.87 6.43 37.16 0.24 1.11 16 21 O -0.57 -6.46 13.20 -35.23 -0.46 -6.92 16 22 C -0.11 -1.40 5.20 -26.76 -0.14 -1.54 16 23 C -0.12 -1.77 5.18 -26.76 -0.14 -1.91 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.95 7.87 -51.93 -0.41 0.55 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.09 2.40 5.97 -51.93 -0.31 2.09 16 28 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.33 6.77 8.05 -39.29 -0.32 6.45 16 31 H 0.06 1.19 7.46 -51.93 -0.39 0.80 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.96 7.82 -51.93 -0.41 0.55 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.37 2.39 9.12 45.56 0.42 2.80 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 LS Contribution 318.25 15.07 4.80 4.80 Total: -1.00 -28.81 318.25 -8.40 -37.21 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.79 Total: 7.21 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -0.98 Total: -18.99 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.06 Total: -39.50 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.46 Total: -6.92 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.81 -8.40 -37.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154471.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.183 kcal (2) G-P(sol) polarization free energy of solvation -28.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds