Wall clock time and date at job start Sun Mar 29 2020 23:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47018 * 2 1 4 4 H 1.09005 * 109.47048 * 56.35105 * 3 2 1 5 5 C 1.50697 * 109.47174 * 176.35321 * 3 2 1 6 6 H 1.07992 * 120.00045 * 119.99821 * 5 3 2 7 7 C 1.37877 * 120.00013 * 299.99927 * 5 3 2 8 8 N 1.31514 * 119.99945 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00220 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47069 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47254 * 120.00004 * 9 7 5 12 12 H 1.48497 * 109.47560 * 240.00327 * 9 7 5 13 13 N 1.46898 * 109.47139 * 296.35414 * 3 2 1 14 14 C 1.46898 * 110.99962 * 149.94525 * 13 3 2 15 15 H 1.09000 * 109.47306 * 326.64309 * 14 13 3 16 16 C 1.53000 * 109.47478 * 86.64665 * 14 13 3 17 17 C 1.52999 * 109.47192 * 59.99676 * 16 14 13 18 18 C 1.52998 * 109.47029 * 60.00429 * 17 16 14 19 19 H 1.08992 * 109.47076 * 60.00055 * 18 17 16 20 20 C 1.52999 * 109.47029 * 179.97438 * 18 17 16 21 21 O 1.42895 * 109.47082 * 295.00097 * 20 18 17 22 22 C 1.53000 * 109.47110 * 299.99627 * 18 17 16 23 23 C 1.52999 * 109.46870 * 60.00276 * 22 18 17 24 24 H 1.09001 * 109.46978 * 175.28817 * 1 2 3 25 25 H 1.08999 * 109.47469 * 295.28587 * 1 2 3 26 26 H 1.08999 * 109.47385 * 55.29079 * 1 2 3 27 27 H 1.08996 * 109.46823 * 240.00476 * 2 1 3 28 28 H 1.08991 * 109.46924 * 119.99914 * 2 1 3 29 29 H 0.97004 * 120.00302 * 179.97438 * 8 7 5 30 30 H 1.00900 * 110.99810 * 273.89896 * 13 3 2 31 31 H 1.09001 * 109.46396 * 300.00185 * 16 14 13 32 32 H 1.08992 * 109.47505 * 179.97438 * 16 14 13 33 33 H 1.09002 * 109.47102 * 300.00615 * 17 16 14 34 34 H 1.08997 * 109.47229 * 180.02562 * 17 16 14 35 35 H 1.09004 * 109.47196 * 55.00312 * 20 18 17 36 36 H 1.09000 * 109.47291 * 174.99703 * 20 18 17 37 37 H 0.96699 * 114.00093 * 180.02562 * 21 20 18 38 38 H 1.08992 * 109.47500 * 300.00169 * 22 18 17 39 39 H 1.09003 * 109.47433 * 179.97438 * 22 18 17 40 40 H 1.09004 * 109.47368 * 60.00058 * 23 22 18 41 41 H 1.09002 * 109.46998 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6242 1.9749 0.8555 5 6 3.5442 1.4435 0.0904 6 1 4.1321 1.8942 -0.6955 7 6 4.1700 0.8690 1.1764 8 7 3.4541 0.3197 2.1331 9 14 6.0346 0.8696 1.2881 10 1 6.6019 1.5442 0.0929 11 1 6.4569 1.5956 2.5128 12 1 6.5274 -0.5299 1.3476 13 7 1.6235 2.1091 -1.2410 14 6 1.4327 3.5497 -1.0263 15 1 1.0617 3.7205 -0.0157 16 6 2.7680 4.2740 -1.2085 17 6 3.2888 4.0343 -2.6271 18 6 2.2753 4.5710 -3.6398 19 1 2.1336 5.6399 -3.4805 20 6 2.7963 4.3320 -5.0584 21 8 3.9822 5.1015 -5.2662 22 6 0.9399 3.8468 -3.4577 23 6 0.4191 4.0864 -2.0391 24 1 -0.3633 -1.0242 -0.0844 25 1 -0.3634 0.4389 0.9292 26 1 -0.3634 0.5851 -0.8448 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8943 -0.0848 2.8970 30 1 2.2860 1.9387 -1.9828 31 1 3.4900 3.8915 -0.4870 32 1 2.6263 5.3429 -1.0497 33 1 3.4304 2.9653 -2.7864 34 1 4.2403 4.5499 -2.7568 35 1 3.0223 3.2736 -5.1889 36 1 2.0367 4.6328 -5.7800 37 1 4.3683 4.9991 -6.1468 38 1 1.0815 2.7779 -3.6170 39 1 0.2176 4.2294 -4.1789 40 1 0.2774 5.1554 -1.8798 41 1 -0.5324 3.5709 -1.9095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154473.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:11 Heat of formation + Delta-G solvation = -80.860456 kcal Electronic energy + Delta-G solvation = -18742.483658 eV Core-core repulsion = 16041.870460 eV Total energy + Delta-G solvation = -2700.613198 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.06015 -36.70140 -34.98071 -32.26543 -31.22953 -30.27805 -28.81434 -26.08042 -24.69069 -22.63580 -22.12748 -20.70742 -19.52948 -18.44455 -17.17503 -16.62205 -15.32279 -14.98093 -14.54802 -14.14382 -13.85752 -13.67402 -13.04896 -12.80885 -12.56640 -12.36678 -11.95217 -11.66408 -11.47179 -11.34444 -11.10149 -10.93679 -10.78963 -10.69191 -10.59150 -10.13642 -10.05983 -9.96756 -9.69175 -9.63279 -9.48561 -9.23204 -8.87437 -8.33280 -7.15341 -5.95886 -4.07338 3.27499 3.36440 3.39915 4.28980 4.42379 4.99526 5.12662 5.23348 5.28601 5.42706 5.51804 5.67010 5.73145 5.84425 5.88707 6.04192 6.05978 6.11419 6.27185 6.42901 6.44546 6.50942 6.56473 6.61175 6.71987 6.76119 6.83647 6.91519 7.10954 7.20886 7.22872 7.52986 7.65109 7.65926 7.83226 8.16564 8.22821 8.42399 8.76666 9.07141 9.59684 11.04313 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020668 B = 0.008147 C = 0.006427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.427203 B = 3435.952118 C = 4355.857761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.214 3.786 4 H 0.029 0.971 5 C -0.537 4.537 6 H 0.057 0.943 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.884 3.116 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.683 5.683 14 C 0.096 3.904 15 H 0.066 0.934 16 C -0.149 4.149 17 C -0.105 4.105 18 C -0.085 4.085 19 H 0.069 0.931 20 C 0.079 3.921 21 O -0.573 6.573 22 C -0.107 4.107 23 C -0.103 4.103 24 H 0.022 0.978 25 H 0.034 0.966 26 H 0.050 0.950 27 H 0.028 0.972 28 H 0.088 0.912 29 H 0.259 0.741 30 H 0.329 0.671 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.039 0.961 37 H 0.373 0.627 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.392 6.399 -11.036 13.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.106 3.894 4 H 0.047 0.953 5 C -0.576 4.576 6 H 0.075 0.925 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.314 5.314 14 C -0.016 4.016 15 H 0.084 0.916 16 C -0.188 4.188 17 C -0.143 4.143 18 C -0.104 4.104 19 H 0.087 0.913 20 C 0.002 3.998 21 O -0.378 6.378 22 C -0.145 4.145 23 C -0.142 4.142 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.219 0.781 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.179 6.315 -10.145 12.659 hybrid contribution 2.168 0.067 -0.332 2.194 sum -2.010 6.382 -10.476 12.431 Atomic orbital electron populations 1.21711 0.99164 0.98338 1.00322 1.21493 0.91963 0.99491 1.01471 1.19187 0.92649 0.91067 0.86480 0.95296 1.21943 0.92662 1.37166 1.05862 0.92475 1.24935 0.97715 0.95166 0.95802 1.69892 1.34696 1.38149 1.09716 0.86668 0.86507 0.77673 0.77937 1.19863 1.21159 1.21084 1.60975 1.52495 1.07503 1.10404 1.21383 0.93147 0.89503 0.97523 0.91562 1.22243 0.99814 0.99566 0.97153 1.21443 0.97626 1.00944 0.94268 1.21173 0.95736 1.00593 0.92872 0.91285 1.22308 0.86040 0.94286 0.97199 1.86512 1.43185 1.70452 1.37610 1.21428 0.94738 1.01057 0.97258 1.21522 0.99046 0.99175 0.94409 0.95847 0.94712 0.93047 0.95271 0.89386 0.93064 0.85202 0.89862 0.93503 0.91782 0.92239 0.93612 0.94248 0.78100 0.90926 0.93111 0.93119 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.85 37.16 0.37 -2.48 16 2 C -0.11 -2.52 5.44 -26.73 -0.15 -2.67 16 3 C 0.21 5.18 2.01 -68.87 -0.14 5.04 16 4 H 0.03 0.79 7.31 -51.93 -0.38 0.41 16 5 C -0.54 -14.09 7.16 -34.44 -0.25 -14.33 16 6 H 0.06 1.49 6.94 -52.49 -0.36 1.13 16 7 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 8 N -0.89 -24.97 11.30 55.43 0.63 -24.34 16 9 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.68 -13.80 4.85 -100.95 -0.49 -14.29 16 14 C 0.10 1.74 2.86 -67.71 -0.19 1.54 16 15 H 0.07 1.31 7.35 -51.93 -0.38 0.93 16 16 C -0.15 -2.68 5.22 -26.73 -0.14 -2.82 16 17 C -0.11 -1.74 4.85 -26.73 -0.13 -1.87 16 18 C -0.09 -1.19 2.43 -90.62 -0.22 -1.41 16 19 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 20 C 0.08 0.97 6.43 37.16 0.24 1.20 16 21 O -0.57 -7.20 13.19 -35.23 -0.46 -7.67 16 22 C -0.11 -1.46 4.97 -26.73 -0.13 -1.59 16 23 C -0.10 -1.55 5.64 -26.73 -0.15 -1.70 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 1.02 7.58 -51.93 -0.39 0.62 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 2.35 5.98 -51.93 -0.31 2.04 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.33 6.69 5.18 -39.29 -0.20 6.48 16 31 H 0.08 1.76 6.27 -51.93 -0.33 1.43 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.14 6.24 -51.93 -0.32 0.81 16 34 H 0.06 1.02 7.82 -51.93 -0.41 0.62 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.37 2.86 9.12 45.56 0.42 3.28 16 38 H 0.07 1.06 7.25 -51.93 -0.38 0.68 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 309.12 15.07 4.66 4.66 Total: -1.00 -28.07 309.12 -8.09 -36.16 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.41 Total: 8.71 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -0.99 Total: -19.39 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.14 Total: -38.63 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.46 Total: -7.67 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.07 -8.09 -36.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154473.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.696 kcal (2) G-P(sol) polarization free energy of solvation -28.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds