Wall clock time and date at job start Sun Mar 29 2020 23:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47193 * 2 1 4 4 H 1.09004 * 109.47313 * 185.14110 * 3 2 1 5 5 C 1.50694 * 109.47418 * 305.14720 * 3 2 1 6 6 H 1.08005 * 120.00410 * 119.99279 * 5 3 2 7 7 C 1.37880 * 120.00064 * 300.00350 * 5 3 2 8 8 N 1.31514 * 119.99487 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00512 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47160 * 89.99258 * 9 7 5 11 11 H 1.48493 * 109.47351 * 209.99537 * 9 7 5 12 12 H 1.48503 * 109.46886 * 329.99930 * 9 7 5 13 13 N 1.46906 * 109.46974 * 65.14342 * 3 2 1 14 14 C 1.46901 * 110.99668 * 85.61762 * 13 3 2 15 15 H 1.09005 * 109.47525 * 326.67394 * 14 13 3 16 16 C 1.53005 * 109.47400 * 86.67497 * 14 13 3 17 17 C 1.52996 * 109.47228 * 179.97438 * 16 14 13 18 18 C 1.52993 * 109.47341 * 300.00051 * 17 16 14 19 19 H 1.09005 * 109.47297 * 300.00003 * 18 17 16 20 20 C 1.53005 * 109.47523 * 180.02562 * 18 17 16 21 21 O 1.42901 * 109.46758 * 64.99898 * 20 18 17 22 22 C 1.53003 * 109.47316 * 60.00019 * 18 17 16 23 23 C 1.52996 * 109.46900 * 300.00251 * 22 18 17 24 24 H 1.08997 * 109.47042 * 294.62080 * 1 2 3 25 25 H 1.09000 * 109.46966 * 54.62353 * 1 2 3 26 26 H 1.09000 * 109.47226 * 174.62526 * 1 2 3 27 27 H 1.09001 * 109.47174 * 239.99668 * 2 1 3 28 28 H 1.09003 * 109.46902 * 119.99922 * 2 1 3 29 29 H 0.97006 * 119.99776 * 180.02562 * 8 7 5 30 30 H 1.00896 * 111.00378 * 321.66595 * 13 3 2 31 31 H 1.09005 * 109.46937 * 60.00045 * 16 14 13 32 32 H 1.08991 * 109.46830 * 300.00409 * 16 14 13 33 33 H 1.08998 * 109.46817 * 180.02562 * 17 16 14 34 34 H 1.08996 * 109.46859 * 60.00120 * 17 16 14 35 35 H 1.08994 * 109.47124 * 184.99959 * 20 18 17 36 36 H 1.09002 * 109.46660 * 305.00605 * 20 18 17 37 37 H 0.96705 * 113.99810 * 180.02562 * 21 20 18 38 38 H 1.09001 * 109.47512 * 180.02562 * 22 18 17 39 39 H 1.09005 * 109.46950 * 59.99772 * 22 18 17 40 40 H 1.09008 * 109.46760 * 179.97438 * 23 22 18 41 41 H 1.09002 * 109.47114 * 299.99044 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0921 5 6 1.4364 2.1887 -1.1617 6 1 0.8271 3.0627 -0.9843 7 6 1.6617 1.7558 -2.4512 8 7 2.4038 0.6918 -2.6673 9 14 0.9129 2.6803 -3.8913 10 1 1.8542 3.7353 -4.3455 11 1 0.6541 1.7343 -5.0062 12 1 -0.3649 3.3067 -3.4668 13 7 1.6543 2.0982 1.2567 14 6 2.6392 1.8313 2.3135 15 1 3.0570 0.8337 2.1774 16 6 3.7613 2.8687 2.2389 17 6 4.7866 2.5911 3.3400 18 6 4.1035 2.6761 4.7063 19 1 3.6856 3.6737 4.8422 20 6 5.1290 2.3991 5.8075 21 8 6.1141 3.4343 5.8122 22 6 2.9814 1.6387 4.7810 23 6 1.9561 1.9163 3.6799 24 1 -0.3633 0.4281 0.9342 25 1 -0.3633 0.5950 -0.8379 26 1 -0.3634 -1.0231 -0.0963 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.5627 0.3873 -3.5745 30 1 0.7298 1.8141 1.5440 31 1 3.3434 3.8663 2.3752 32 1 4.2476 2.8084 1.2654 33 1 5.5857 3.3305 3.2871 34 1 5.2045 1.5936 3.2041 35 1 4.6259 2.3718 6.7740 36 1 5.6114 1.4394 5.6216 37 1 6.7982 3.3231 6.4866 38 1 2.4944 1.6995 5.7543 39 1 3.3993 0.6411 4.6451 40 1 1.1569 1.1769 3.7329 41 1 1.5381 2.9138 3.8158 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:12 Heat of formation + Delta-G solvation = -81.534313 kcal Electronic energy + Delta-G solvation = -18279.342331 eV Core-core repulsion = 15578.699913 eV Total energy + Delta-G solvation = -2700.642419 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.95206 -36.88879 -35.45502 -32.56137 -30.96546 -30.46434 -28.71620 -26.16870 -24.24643 -23.23543 -22.31840 -20.68586 -19.53140 -18.95300 -17.36169 -16.09091 -15.18989 -15.11608 -14.69675 -14.53752 -13.91136 -13.67812 -13.31753 -12.90545 -12.66888 -12.47343 -12.18067 -11.82513 -11.59542 -11.54478 -11.04261 -10.86198 -10.81036 -10.69475 -10.48240 -10.32192 -10.19323 -10.06737 -9.80540 -9.76008 -9.57557 -9.37170 -8.87869 -8.28418 -7.10926 -5.92201 -3.93143 3.36129 3.42536 3.46403 4.13804 4.48629 4.80609 4.93855 5.06863 5.22510 5.30888 5.39507 5.47737 5.59355 5.72716 5.77452 5.85044 5.86779 5.94201 6.14988 6.20706 6.38184 6.39790 6.41931 6.45856 6.49119 6.61345 6.66955 6.82598 6.93805 6.96592 7.34955 7.39202 7.52801 7.57075 7.76637 7.96585 8.37380 8.65897 8.72667 9.13053 9.70384 11.14903 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036436 B = 0.005348 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.279625 B = 5234.497748 C = 5603.888582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.486 4.486 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.089 3.911 15 H 0.033 0.967 16 C -0.104 4.104 17 C -0.108 4.108 18 C -0.086 4.086 19 H 0.076 0.924 20 C 0.080 3.920 21 O -0.572 6.572 22 C -0.108 4.108 23 C -0.118 4.118 24 H 0.026 0.974 25 H 0.069 0.931 26 H 0.022 0.978 27 H 0.091 0.909 28 H 0.009 0.991 29 H 0.258 0.742 30 H 0.325 0.675 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.374 0.626 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.203 0.373 15.281 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.525 4.525 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.313 5.313 14 C -0.022 4.022 15 H 0.051 0.949 16 C -0.142 4.142 17 C -0.146 4.146 18 C -0.105 4.105 19 H 0.094 0.906 20 C 0.002 3.998 21 O -0.376 6.376 22 C -0.146 4.146 23 C -0.156 4.156 24 H 0.045 0.955 25 H 0.088 0.912 26 H 0.041 0.959 27 H 0.110 0.890 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.144 0.856 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.220 0.780 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.162 1.094 14.442 14.825 hybrid contribution -0.214 -0.868 -0.174 0.911 sum 2.948 0.225 14.268 14.571 Atomic orbital electron populations 1.21594 0.97767 0.98589 1.00723 1.22103 0.94936 1.01350 1.00084 1.19220 0.95874 0.88379 0.85722 0.94967 1.21090 1.30294 1.11348 0.89736 0.92113 1.24914 0.95636 0.95168 0.98703 1.69889 1.39211 1.24059 1.20556 0.86592 0.79610 0.79534 0.82220 1.20867 1.21528 1.19981 1.60839 1.03574 1.63285 1.03639 1.21418 0.93809 0.96583 0.90351 0.94875 1.21503 0.95321 0.99426 0.97956 1.21527 0.98194 1.01412 0.93501 1.21165 0.94464 1.00206 0.94625 0.90560 1.22290 0.89716 0.89789 0.98014 1.86521 1.41007 1.49810 1.60296 1.21469 0.95931 0.98573 0.98620 1.21706 0.97359 1.01920 0.94632 0.95452 0.91234 0.95891 0.89032 0.97225 0.93222 0.85635 0.91891 0.91673 0.91682 0.92702 0.94083 0.93829 0.77971 0.92306 0.92079 0.92432 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.40 37.16 0.35 -2.44 16 2 C -0.15 -3.44 5.49 -26.73 -0.15 -3.59 16 3 C 0.22 5.37 2.14 -68.87 -0.15 5.22 16 4 H 0.03 0.90 7.24 -51.93 -0.38 0.52 16 5 C -0.49 -13.25 7.25 -34.44 -0.25 -13.50 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.54 5.28 -17.82 -0.09 1.45 16 8 N -0.90 -25.57 11.38 55.43 0.63 -24.94 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.68 -14.49 6.05 -100.95 -0.61 -15.10 16 14 C 0.09 1.60 2.28 -67.71 -0.15 1.45 16 15 H 0.03 0.65 7.15 -51.93 -0.37 0.28 16 16 C -0.10 -1.82 5.43 -26.73 -0.15 -1.97 16 17 C -0.11 -1.59 5.10 -26.74 -0.14 -1.73 16 18 C -0.09 -1.09 2.43 -90.62 -0.22 -1.31 16 19 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 20 C 0.08 0.84 6.43 37.16 0.24 1.07 16 21 O -0.57 -6.29 13.19 -35.23 -0.46 -6.75 16 22 C -0.11 -1.31 5.21 -26.73 -0.14 -1.45 16 23 C -0.12 -1.72 5.17 -26.73 -0.14 -1.86 16 24 H 0.03 0.52 6.64 -51.93 -0.35 0.18 16 25 H 0.07 1.64 6.85 -51.93 -0.36 1.29 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 2.44 6.23 -51.93 -0.32 2.12 16 28 H 0.01 0.20 7.45 -51.93 -0.39 -0.18 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.33 6.62 6.24 -39.29 -0.25 6.37 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.30 7.56 -51.93 -0.39 0.90 16 33 H 0.06 0.97 7.82 -51.93 -0.41 0.57 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.37 2.28 9.12 45.56 0.42 2.69 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.81 8.12 -51.92 -0.42 0.39 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 312.89 15.07 4.72 4.72 Total: -1.00 -29.20 312.89 -8.29 -37.49 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.56 Total: 6.68 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -0.98 Total: -18.64 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.02 Total: -40.04 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.46 Total: -6.75 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.20 -8.29 -37.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.042 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds