Wall clock time and date at job start Sun Mar 29 2020 23:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46945 * 2 1 4 4 H 1.08993 * 109.46931 * 305.62243 * 3 2 1 5 5 C 1.50702 * 109.46870 * 185.62647 * 3 2 1 6 6 H 1.07997 * 119.99679 * 239.99861 * 5 3 2 7 7 C 1.37877 * 120.00043 * 59.72209 * 5 3 2 8 8 N 1.31520 * 120.00108 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99802 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47194 * 60.00664 * 9 7 5 11 11 H 1.48510 * 109.46938 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47404 * 300.00005 * 9 7 5 13 13 N 1.46893 * 109.47032 * 65.62530 * 3 2 1 14 14 C 1.46898 * 111.00003 * 203.21793 * 13 3 2 15 15 H 1.08994 * 109.47415 * 326.24072 * 14 13 3 16 16 C 1.53010 * 109.46838 * 86.23697 * 14 13 3 17 17 C 1.52998 * 109.46856 * 60.00412 * 16 14 13 18 18 C 1.52994 * 109.47679 * 59.99983 * 17 16 14 19 19 H 1.08996 * 109.47485 * 59.99391 * 18 17 16 20 20 C 1.52999 * 109.47613 * 180.02562 * 18 17 16 21 21 O 1.42908 * 109.46539 * 294.99744 * 20 18 17 22 22 C 1.53010 * 109.46990 * 299.99935 * 18 17 16 23 23 C 1.52994 * 109.47308 * 206.23475 * 14 13 3 24 24 H 1.09000 * 109.47004 * 174.15205 * 1 2 3 25 25 H 1.09001 * 109.46914 * 294.15163 * 1 2 3 26 26 H 1.08996 * 109.47550 * 54.15332 * 1 2 3 27 27 H 1.09000 * 109.46815 * 240.00229 * 2 1 3 28 28 H 1.09000 * 109.46888 * 120.00162 * 2 1 3 29 29 H 0.96999 * 119.99776 * 179.97438 * 8 7 5 30 30 H 1.00901 * 111.00131 * 327.17470 * 13 3 2 31 31 H 1.08992 * 109.47025 * 179.97438 * 16 14 13 32 32 H 1.08992 * 109.47129 * 300.00139 * 16 14 13 33 33 H 1.09005 * 109.47024 * 299.99363 * 17 16 14 34 34 H 1.09001 * 109.47029 * 180.02562 * 17 16 14 35 35 H 1.08998 * 109.47409 * 54.99024 * 20 18 17 36 36 H 1.08997 * 109.47636 * 174.99921 * 20 18 17 37 37 H 0.96700 * 113.99739 * 179.97438 * 21 20 18 38 38 H 1.09001 * 109.47247 * 300.00170 * 22 18 17 39 39 H 1.08992 * 109.47129 * 179.97438 * 22 18 17 40 40 H 1.09001 * 109.47061 * 60.00569 * 23 14 13 41 41 H 1.09005 * 109.47398 * 179.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9845 -0.8353 5 6 3.5406 1.4448 -0.1393 6 1 4.1538 1.8866 0.6322 7 6 4.1308 0.8778 -1.2489 8 7 3.3842 0.3355 -2.1860 9 14 5.9907 0.8813 -1.4218 10 1 6.5954 0.1489 -0.2803 11 1 6.3708 0.2164 -2.6942 12 1 6.4846 2.2817 -1.4289 13 7 1.6643 2.0947 1.2615 14 6 1.6249 3.5551 1.1078 15 1 2.3910 3.8665 0.3978 16 6 0.2481 3.9763 0.5899 17 6 -0.8273 3.5392 1.5865 18 6 -0.5673 4.2018 2.9408 19 1 -0.5965 5.2854 2.8268 20 6 -1.6423 3.7641 3.9376 21 8 -2.9145 4.2579 3.5132 22 6 0.8095 3.7805 3.4587 23 6 1.8849 4.2176 2.4621 24 1 -0.3633 -1.0223 -0.1047 25 1 -0.3633 0.4205 0.9377 26 1 -0.3634 0.6018 -0.8330 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7994 -0.0631 -2.9668 30 1 0.7819 1.7429 1.6016 31 1 0.2187 5.0599 0.4763 32 1 0.0628 3.5043 -0.3749 33 1 -0.7980 2.4555 1.7005 34 1 -1.8081 3.8389 1.2173 35 1 -1.6725 2.6756 3.9849 36 1 -1.4079 4.1644 4.9239 37 1 -3.6451 4.0175 4.0994 38 1 0.8388 2.6969 3.5727 39 1 0.9949 4.2529 4.4233 40 1 2.8657 3.9175 2.8310 41 1 1.8561 5.3013 2.3480 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154478.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:15 Heat of formation + Delta-G solvation = -78.855183 kcal Electronic energy + Delta-G solvation = -18678.296466 eV Core-core repulsion = 15977.770223 eV Total energy + Delta-G solvation = -2700.526243 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.15625 -36.78519 -35.08638 -32.28573 -31.33816 -30.33674 -28.81346 -26.15758 -24.83560 -22.78278 -22.20839 -20.74752 -19.60145 -18.49892 -17.23646 -16.14551 -15.53151 -15.03826 -14.60411 -14.45439 -13.96419 -13.72951 -13.18576 -12.85747 -12.62282 -12.49254 -12.10673 -11.77013 -11.61152 -11.46547 -11.07022 -11.00961 -10.83495 -10.69708 -10.62013 -10.25647 -10.06311 -9.85332 -9.76867 -9.70993 -9.60851 -9.32437 -8.96052 -8.29603 -7.08259 -5.91276 -3.95198 3.36918 3.40965 3.44440 4.21596 4.49020 4.89228 5.04766 5.16133 5.33401 5.39103 5.45103 5.57352 5.67927 5.72808 5.78562 5.90649 6.01609 6.02871 6.17301 6.21119 6.21987 6.34935 6.43024 6.43196 6.53173 6.64906 6.77301 6.84177 6.88937 6.91128 7.17359 7.27419 7.57321 7.61314 7.84916 7.98835 8.42623 8.48017 8.88257 9.13202 9.69657 11.13819 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034202 B = 0.006322 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.460263 B = 4427.785200 C = 4884.459928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.680 5.680 14 C 0.092 3.908 15 H 0.081 0.919 16 C -0.148 4.148 17 C -0.108 4.108 18 C -0.084 4.084 19 H 0.071 0.929 20 C 0.079 3.921 21 O -0.574 6.574 22 C -0.109 4.109 23 C -0.102 4.102 24 H 0.036 0.964 25 H 0.033 0.967 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.039 0.961 29 H 0.259 0.741 30 H 0.317 0.683 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.374 0.626 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.008 5.662 9.861 14.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.312 5.312 14 C -0.019 4.019 15 H 0.099 0.901 16 C -0.188 4.188 17 C -0.145 4.145 18 C -0.103 4.103 19 H 0.089 0.911 20 C 0.001 3.999 21 O -0.378 6.378 22 C -0.147 4.147 23 C -0.140 4.140 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.117 0.883 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.220 0.780 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.962 5.786 9.436 13.635 hybrid contribution -0.182 -0.204 -0.242 0.365 sum -8.144 5.583 9.194 13.491 Atomic orbital electron populations 1.21892 0.99731 0.99561 0.99450 1.21760 0.91102 1.00601 1.02930 1.19143 0.95183 0.89828 0.84747 0.98143 1.21199 0.91418 1.36147 1.04204 0.92204 1.24955 0.97930 0.95746 0.95942 1.69866 1.34660 1.39431 1.09790 0.86630 0.86008 0.78063 0.77058 1.20390 1.21546 1.20498 1.60828 1.34878 1.02346 1.33174 1.21419 0.94814 0.90060 0.95594 0.90128 1.22206 0.97042 1.00661 0.98848 1.21489 0.98633 1.00066 0.94356 1.21160 0.93442 1.00768 0.94931 0.91070 1.22313 0.83502 0.97371 0.96685 1.86505 1.17498 1.79387 1.54443 1.21457 0.93190 1.02043 0.97976 1.21488 0.98568 0.98341 0.95618 0.94526 0.94757 0.93906 0.88313 0.94230 0.93132 0.86305 0.92588 0.92059 0.92089 0.92041 0.93639 0.94042 0.78028 0.90963 0.92906 0.91356 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.63 37.16 0.36 -2.57 16 2 C -0.13 -2.98 5.37 -26.73 -0.14 -3.12 16 3 C 0.22 5.40 1.86 -68.87 -0.13 5.27 16 4 H 0.00 0.03 7.21 -51.93 -0.37 -0.35 16 5 C -0.49 -13.51 8.41 -34.44 -0.29 -13.80 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.67 11.27 55.43 0.62 -25.04 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 N -0.68 -14.13 5.53 -100.96 -0.56 -14.69 16 14 C 0.09 1.72 2.65 -67.71 -0.18 1.54 16 15 H 0.08 1.72 7.56 -51.93 -0.39 1.33 16 16 C -0.15 -2.49 5.51 -26.73 -0.15 -2.64 16 17 C -0.11 -1.62 4.85 -26.73 -0.13 -1.75 16 18 C -0.08 -1.12 2.43 -90.62 -0.22 -1.34 16 19 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 20 C 0.08 0.89 6.43 37.16 0.24 1.13 16 21 O -0.57 -6.59 13.20 -35.23 -0.46 -7.05 16 22 C -0.11 -1.49 4.97 -26.73 -0.13 -1.62 16 23 C -0.10 -1.60 5.64 -26.73 -0.15 -1.75 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.03 0.61 6.09 -51.93 -0.32 0.29 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.10 2.64 5.92 -51.93 -0.31 2.33 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.32 6.11 3.56 -39.29 -0.14 5.97 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.14 7.50 -51.93 -0.39 0.75 16 33 H 0.06 0.96 5.67 -51.93 -0.29 0.67 16 34 H 0.06 0.93 7.82 -51.93 -0.41 0.52 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.37 2.49 9.12 45.56 0.42 2.90 16 38 H 0.07 1.06 7.24 -51.93 -0.38 0.69 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 309.11 15.07 4.66 4.66 Total: -1.00 -29.17 309.11 -8.13 -37.30 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.35 Total: 7.46 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -1.02 Total: -19.25 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.07 Total: -39.73 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.46 Total: -7.05 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.17 -8.13 -37.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154478.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.552 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds