Wall clock time and date at job start Sun Mar 29 2020 23:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47318 * 2 1 4 4 H 1.08994 * 109.47318 * 54.65506 * 3 2 1 5 5 C 1.50701 * 109.47397 * 174.65855 * 3 2 1 6 6 H 1.08000 * 120.00842 * 119.99437 * 5 3 2 7 7 C 1.37879 * 119.99822 * 299.99950 * 5 3 2 8 8 N 1.31519 * 120.00016 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00236 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47225 * 89.99846 * 9 7 5 11 11 H 1.48498 * 109.47159 * 209.99965 * 9 7 5 12 12 H 1.48500 * 109.46920 * 329.99900 * 9 7 5 13 13 N 1.46903 * 109.46880 * 294.65458 * 3 2 1 14 14 C 1.46903 * 110.99645 * 154.39713 * 13 3 2 15 15 H 1.08995 * 109.47270 * 32.02052 * 14 13 3 16 16 C 1.52992 * 109.47240 * 272.01227 * 14 13 3 17 17 C 1.52995 * 109.47391 * 180.02562 * 16 14 13 18 18 C 1.52992 * 109.47355 * 59.99886 * 17 16 14 19 19 C 1.53001 * 109.47304 * 300.00586 * 18 17 16 20 20 H 1.09001 * 109.46692 * 299.99781 * 19 18 17 21 21 O 1.42899 * 109.47229 * 180.02562 * 19 18 17 22 22 C 1.42898 * 114.00574 * 89.99580 * 21 19 18 23 23 C 1.52995 * 109.47393 * 59.99437 * 19 18 17 24 24 H 1.09001 * 109.47209 * 300.67940 * 1 2 3 25 25 H 1.08999 * 109.47043 * 60.67890 * 1 2 3 26 26 H 1.09003 * 109.47389 * 180.67995 * 1 2 3 27 27 H 1.09004 * 109.47326 * 239.99585 * 2 1 3 28 28 H 1.09003 * 109.47174 * 119.99993 * 2 1 3 29 29 H 0.97002 * 120.00237 * 179.97438 * 8 7 5 30 30 H 1.00897 * 111.00084 * 30.44107 * 13 3 2 31 31 H 1.09002 * 109.47547 * 300.00189 * 16 14 13 32 32 H 1.09002 * 109.47271 * 59.99967 * 16 14 13 33 33 H 1.08999 * 109.47669 * 180.02562 * 17 16 14 34 34 H 1.09001 * 109.46920 * 299.99934 * 17 16 14 35 35 H 1.09001 * 109.47067 * 60.00138 * 18 17 16 36 36 H 1.08997 * 109.47455 * 179.97438 * 18 17 16 37 37 H 1.08999 * 109.46757 * 59.99518 * 22 21 19 38 38 H 1.08999 * 109.47098 * 180.02562 * 22 21 19 39 39 H 1.09004 * 109.47025 * 300.00369 * 22 21 19 40 40 H 1.08993 * 109.47040 * 180.02562 * 23 19 18 41 41 H 1.09002 * 109.46578 * 60.00066 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6007 1.9832 0.8382 5 6 3.5412 1.4445 0.1323 6 1 4.1510 1.8874 -0.6413 7 6 4.1364 0.8808 1.2409 8 7 3.3939 0.3417 2.1832 9 14 5.9972 0.8827 1.4046 10 1 6.4311 2.1170 2.1071 11 1 6.4268 -0.3068 2.1829 12 1 6.6129 0.8394 0.0540 13 7 1.6585 2.0966 -1.2588 14 6 1.5649 3.5527 -1.0879 15 1 2.2887 3.8782 -0.3408 16 6 0.1539 3.9223 -0.6263 17 6 0.0561 5.4388 -0.4490 18 6 0.3536 6.1284 -1.7819 19 6 1.7646 5.7588 -2.2436 20 1 2.4884 6.0846 -1.4965 21 8 2.0427 6.4033 -3.4883 22 6 2.6356 7.6965 -3.3536 23 6 1.8624 4.2423 -2.4210 24 1 -0.3634 0.5243 0.8838 25 1 -0.3633 0.5032 -0.8960 26 1 -0.3634 -1.0276 0.0122 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8126 -0.0552 2.9630 30 1 0.7940 1.7180 -1.6155 31 1 -0.5699 3.5969 -1.3735 32 1 -0.0582 3.4307 0.3232 33 1 -0.9490 5.7022 -0.1196 34 1 0.7799 5.7646 0.2981 35 1 -0.3701 5.8026 -2.5290 36 1 0.2835 7.2088 -1.6557 37 1 3.5811 7.6087 -2.8186 38 1 2.8149 8.1188 -4.3424 39 1 1.9624 8.3486 -2.7970 40 1 2.8677 3.9790 -2.7495 41 1 1.1386 3.9165 -3.1680 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:16 Heat of formation + Delta-G solvation = -88.997656 kcal Electronic energy + Delta-G solvation = -18426.040900 eV Core-core repulsion = 15725.074846 eV Total energy + Delta-G solvation = -2700.966054 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.39023 -38.42252 -36.62865 -34.16089 -32.77692 -31.13281 -29.60327 -27.79483 -27.28329 -24.69351 -23.30266 -22.51335 -21.55102 -20.74318 -18.29928 -17.61581 -16.85265 -16.58309 -16.06064 -15.84805 -15.55345 -15.39500 -14.69833 -14.56596 -14.24913 -13.91071 -13.68106 -13.35358 -13.19864 -13.00672 -12.71704 -12.61165 -12.56333 -12.16011 -12.03510 -11.95159 -11.74446 -11.59322 -11.51598 -11.39418 -11.20289 -10.96015 -10.42817 -10.37560 -8.91349 -8.05823 -6.17568 1.39339 1.41039 1.51663 2.43628 2.77090 3.18860 3.63003 3.78861 4.02669 4.09662 4.22514 4.26992 4.47158 4.51746 4.52713 4.56398 4.59001 4.61614 4.63754 4.70638 4.73739 4.85887 5.00968 5.04888 5.10081 5.16504 5.20802 5.25367 5.26430 5.37904 5.44176 5.47680 5.64592 5.78162 5.92675 6.30851 6.39300 6.57403 6.97004 7.06113 7.51575 8.96840 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.006968 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.748530 B = 4017.502956 C = 4845.491494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.229 3.771 4 H -0.027 1.027 5 C -0.511 4.511 6 H 0.046 0.954 7 C 0.011 3.989 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.273 1.273 13 N -0.686 5.686 14 C 0.101 3.899 15 H 0.047 0.953 16 C -0.141 4.141 17 C -0.108 4.108 18 C -0.128 4.128 19 C 0.092 3.908 20 H 0.055 0.945 21 O -0.406 6.406 22 C 0.024 3.976 23 C -0.092 4.092 24 H 0.037 0.963 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.260 0.740 30 H 0.329 0.671 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.040 0.960 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.644 11.429 -6.787 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 C 0.121 3.879 4 H -0.010 1.010 5 C -0.550 4.550 6 H 0.064 0.936 7 C -0.187 4.187 8 N -0.559 5.559 9 Si 0.778 3.222 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.198 1.198 13 N -0.317 5.317 14 C -0.010 4.010 15 H 0.065 0.935 16 C -0.180 4.180 17 C -0.146 4.146 18 C -0.165 4.165 19 C 0.034 3.966 20 H 0.073 0.927 21 O -0.326 6.326 22 C -0.072 4.072 23 C -0.130 4.130 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.118 0.882 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.007 11.251 -7.036 14.566 hybrid contribution 0.488 -0.099 1.194 1.294 sum -5.519 11.152 -5.841 13.746 Atomic orbital electron populations 1.21740 0.96179 1.01137 1.00451 1.21606 0.94323 0.99137 1.01072 1.18880 0.93653 0.90497 0.84873 1.00976 1.21497 0.93068 1.36342 1.04097 0.93617 1.25644 1.02071 0.95407 0.95628 1.69996 1.36115 1.39914 1.09889 0.85658 0.81119 0.77531 0.77928 1.20352 1.20711 1.19822 1.60590 1.37009 1.03017 1.31095 1.21311 0.95530 0.88493 0.95624 0.93472 1.22217 0.97470 0.97429 1.00880 1.21393 1.02426 0.93776 0.96995 1.21934 0.96383 1.00917 0.97300 1.22106 0.96592 0.92457 0.85430 0.92711 1.87858 1.82168 1.32471 1.30060 1.22963 0.96817 0.83817 1.03576 1.21420 1.01697 0.92630 0.97253 0.94400 0.92426 0.92455 0.94718 0.91460 0.93095 0.85231 0.90887 0.93614 0.89876 0.92556 0.90927 0.90407 0.94103 0.88232 0.92852 0.93202 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 9.74 71.98 0.70 -4.46 16 2 C -0.12 -5.84 5.36 30.59 0.16 -5.68 16 3 C 0.23 11.56 1.84 44.17 0.08 11.64 16 4 H -0.03 -1.52 7.34 -2.39 -0.02 -1.54 16 5 C -0.51 -28.97 8.54 25.60 0.22 -28.75 16 6 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 7 C 0.01 0.59 5.29 84.65 0.45 1.04 16 8 N -0.92 -53.24 11.29 21.45 0.24 -52.99 16 9 Si 0.95 44.84 29.54 68.60 2.03 46.86 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 13 N -0.69 -29.16 6.06 -473.32 -2.87 -32.03 16 14 C 0.10 3.77 2.26 44.91 0.10 3.87 16 15 H 0.05 2.06 7.63 -2.39 -0.02 2.05 16 16 C -0.14 -4.32 5.16 30.59 0.16 -4.16 16 17 C -0.11 -2.67 5.92 30.59 0.18 -2.48 16 18 C -0.13 -2.95 5.54 30.59 0.17 -2.79 16 19 C 0.09 2.58 2.61 30.59 0.08 2.66 16 20 H 0.05 1.56 7.78 -2.39 -0.02 1.54 16 21 O -0.41 -11.20 10.35 -148.98 -1.54 -12.74 16 22 C 0.02 0.48 10.82 113.37 1.23 1.71 16 23 C -0.09 -3.04 5.18 30.59 0.16 -2.89 16 24 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.89 6.47 -2.39 -0.02 1.88 16 26 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.03 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.07 3.65 5.95 -2.39 -0.01 3.63 16 29 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.33 12.51 6.19 -89.70 -0.56 11.96 16 31 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 32 H 0.05 1.56 7.66 -2.39 -0.02 1.55 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.51 7.87 -2.39 -0.02 1.49 16 37 H 0.04 0.80 8.08 -2.39 -0.02 0.78 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.05 0.88 7.87 -2.38 -0.02 0.86 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -61.80 317.18 1.97 -59.83 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.42 Total: 21.36 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 3.69 Total: -30.29 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -2.62 Total: -85.03 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -1.54 Total: -12.74 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -61.80 1.97 -59.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.168 kcal (2) G-P(sol) polarization free energy of solvation -61.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds