Wall clock time and date at job start Sun Mar 29 2020 23:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47014 * 2 1 4 4 H 1.09006 * 109.46810 * 54.85732 * 3 2 1 5 5 C 1.50699 * 109.47306 * 174.86047 * 3 2 1 6 6 H 1.07998 * 120.00005 * 119.99965 * 5 3 2 7 7 C 1.37876 * 119.99712 * 299.72547 * 5 3 2 8 8 N 1.31512 * 120.00034 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99749 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47219 * 59.99793 * 9 7 5 11 11 H 1.48500 * 109.47344 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47197 * 299.99642 * 9 7 5 13 13 N 1.46899 * 109.46958 * 294.86180 * 3 2 1 14 14 C 1.46907 * 111.00234 * 154.18586 * 13 3 2 15 15 C 1.52995 * 109.47226 * 185.44490 * 14 13 3 16 16 H 1.08997 * 109.47205 * 304.99593 * 15 14 13 17 17 C 1.52999 * 109.47451 * 64.99717 * 15 14 13 18 18 C 1.52998 * 109.47046 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47645 * 300.00181 * 18 17 15 20 20 C 1.52999 * 109.46679 * 59.99895 * 19 18 17 21 21 C 1.53000 * 109.46794 * 184.99801 * 15 14 13 22 22 H 1.09003 * 109.47478 * 60.00392 * 21 15 14 23 23 O 1.42895 * 109.47680 * 299.99671 * 21 15 14 24 24 H 1.08991 * 109.47546 * 296.59686 * 1 2 3 25 25 H 1.09000 * 109.46580 * 56.60022 * 1 2 3 26 26 H 1.09002 * 109.46344 * 176.59196 * 1 2 3 27 27 H 1.08996 * 109.47373 * 240.00385 * 2 1 3 28 28 H 1.08996 * 109.47019 * 119.99695 * 2 1 3 29 29 H 0.97001 * 119.99647 * 180.02562 * 8 7 5 30 30 H 1.00896 * 111.00234 * 278.13882 * 13 3 2 31 31 H 1.09002 * 109.46476 * 305.44576 * 14 13 3 32 32 H 1.08994 * 109.46801 * 65.43869 * 14 13 3 33 33 H 1.08997 * 109.47147 * 300.00230 * 17 15 14 34 34 H 1.09004 * 109.46914 * 60.00181 * 17 15 14 35 35 H 1.09007 * 109.46849 * 179.97438 * 18 17 15 36 36 H 1.09004 * 109.46838 * 60.00474 * 18 17 15 37 37 H 1.08997 * 109.46847 * 300.00161 * 19 18 17 38 38 H 1.08995 * 109.47330 * 179.97438 * 19 18 17 39 39 H 1.09006 * 109.46797 * 180.02562 * 20 19 18 40 40 H 1.08997 * 109.47264 * 60.00521 * 20 19 18 41 41 H 0.96695 * 114.00806 * 180.02562 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6034 1.9822 0.8404 5 6 3.5416 1.4445 0.1273 6 1 4.1487 1.8885 -0.6478 7 6 4.1402 0.8846 1.2360 8 7 3.4007 0.3492 2.1826 9 14 6.0015 0.8876 1.3941 10 1 6.4965 2.2877 1.3877 11 1 6.3913 0.2300 2.6672 12 1 6.5965 0.1470 0.2527 13 7 1.6542 2.0982 -1.2566 14 6 1.5562 3.5537 -1.0826 15 6 1.0230 4.1864 -2.3695 16 1 1.6533 3.8905 -3.2081 17 6 -0.4101 3.7108 -2.6160 18 6 -0.9435 4.3441 -3.9026 19 6 -0.9284 5.8679 -3.7654 20 6 0.5048 6.3434 -3.5189 21 6 1.0382 5.7102 -2.2328 22 1 2.0593 6.0491 -2.0573 23 8 0.2119 6.0982 -1.1334 24 1 -0.3634 0.4600 0.9188 25 1 -0.3632 0.5657 -0.8580 26 1 -0.3632 -1.0259 -0.0611 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8219 -0.0444 2.9627 30 1 2.2974 1.8653 -1.9983 31 1 0.8769 3.7761 -0.2597 32 1 2.5426 3.9601 -0.8594 33 1 -0.4210 2.6252 -2.7133 34 1 -1.0405 4.0067 -1.7774 35 1 -1.9644 4.0048 -4.0784 36 1 -0.3132 4.0485 -4.7414 37 1 -1.5586 6.1634 -2.9266 38 1 -1.3079 6.3190 -4.6821 39 1 0.5156 7.4290 -3.4207 40 1 1.1350 6.0479 -4.3577 41 1 0.1741 7.0534 -0.9876 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:44 Heat of formation + Delta-G solvation = -85.012782 kcal Electronic energy + Delta-G solvation = -18392.737546 eV Core-core repulsion = 15691.944289 eV Total energy + Delta-G solvation = -2700.793257 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.19494 -36.06823 -34.82722 -32.93102 -31.41831 -29.90158 -29.47154 -26.32836 -24.04669 -22.58349 -22.15922 -20.62362 -19.70641 -19.12057 -16.71717 -16.56338 -15.44564 -14.93167 -14.51076 -14.29061 -13.72446 -13.61205 -13.30255 -12.76079 -12.63736 -12.42835 -12.12641 -11.75209 -11.47145 -11.36517 -11.11702 -11.04738 -10.87709 -10.68517 -10.58912 -10.40275 -10.19640 -10.05710 -9.82443 -9.56474 -9.49002 -9.22138 -8.97354 -8.32730 -7.13410 -5.94517 -4.07479 3.30057 3.35269 3.37387 4.42610 4.44057 4.80978 4.86010 5.00302 5.27233 5.32961 5.39961 5.54456 5.63464 5.67998 5.74185 5.88314 5.91539 6.03917 6.19003 6.28747 6.32987 6.42087 6.46140 6.58864 6.64018 6.72925 6.78106 6.86980 6.95499 7.22862 7.25597 7.51931 7.66807 7.83142 7.84202 8.16094 8.23417 8.41520 8.75931 9.06523 9.59671 11.05392 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028496 B = 0.006069 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.372189 B = 4612.238194 C = 5197.222215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.031 0.969 5 C -0.544 4.544 6 H 0.051 0.949 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.688 5.688 14 C 0.077 3.923 15 C -0.074 4.074 16 H 0.071 0.929 17 C -0.099 4.099 18 C -0.121 4.121 19 C -0.113 4.113 20 C -0.150 4.150 21 C 0.109 3.891 22 H 0.049 0.951 23 O -0.555 6.555 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.029 0.971 28 H 0.088 0.912 29 H 0.261 0.739 30 H 0.323 0.677 31 H 0.067 0.933 32 H 0.021 0.979 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.458 9.913 -9.902 15.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.583 4.583 6 H 0.069 0.931 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.316 5.316 14 C -0.053 4.053 15 C -0.093 4.093 16 H 0.090 0.910 17 C -0.137 4.137 18 C -0.158 4.158 19 C -0.151 4.151 20 C -0.188 4.188 21 C 0.050 3.950 22 H 0.067 0.933 23 O -0.359 6.359 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.139 0.861 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.214 9.048 -9.563 15.012 hybrid contribution 2.260 0.912 0.138 2.441 sum -4.954 9.960 -9.425 14.580 Atomic orbital electron populations 1.21708 0.99042 0.98304 1.00440 1.21480 0.92088 0.99325 1.01447 1.19107 0.92617 0.91172 0.86330 0.95111 1.21843 0.92905 1.38251 1.05311 0.93062 1.24931 0.97794 0.95097 0.95725 1.69876 1.34806 1.38546 1.09137 0.86733 0.86241 0.78109 0.77322 1.20493 1.21239 1.20328 1.60861 1.54514 1.06379 1.09861 1.21698 0.98342 0.89566 0.95666 1.21177 0.97805 0.91263 0.99018 0.91045 1.21366 0.95129 1.00790 0.96380 1.21585 1.00556 0.94912 0.98769 1.21427 0.96299 0.96426 1.00930 1.22233 0.97868 0.99665 0.99019 1.21821 0.92391 0.95762 0.85028 0.93289 1.86605 1.70904 1.27227 1.51200 0.94587 0.93114 0.95790 0.95229 0.89379 0.92884 0.86142 0.91455 0.96125 0.90686 0.91757 0.92545 0.92646 0.91549 0.92962 0.92363 0.91391 0.78704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.84 37.16 0.37 -2.56 16 2 C -0.10 -2.57 5.45 -26.73 -0.15 -2.71 16 3 C 0.22 5.45 1.97 -68.87 -0.14 5.31 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.54 -14.90 8.47 -34.44 -0.29 -15.20 16 6 H 0.05 1.39 7.73 -52.49 -0.41 0.99 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.89 -25.45 11.32 55.43 0.63 -24.83 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.69 -14.56 5.07 -107.95 -0.55 -15.11 16 14 C 0.08 1.51 4.69 -3.82 -0.02 1.49 16 15 C -0.07 -1.13 2.21 -90.62 -0.20 -1.33 16 16 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 17 C -0.10 -1.47 4.95 -26.73 -0.13 -1.61 16 18 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 19 C -0.11 -1.23 5.78 -26.73 -0.15 -1.39 16 20 C -0.15 -1.59 5.63 -26.75 -0.15 -1.74 16 21 C 0.11 1.43 3.21 -26.75 -0.09 1.35 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 O -0.56 -7.48 11.39 -35.23 -0.40 -7.88 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 1.03 7.67 -51.93 -0.40 0.64 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 2.40 5.97 -51.93 -0.31 2.09 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.32 6.76 8.46 -39.29 -0.33 6.43 16 31 H 0.07 1.44 7.61 -51.93 -0.40 1.04 16 32 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 33 H 0.07 1.22 7.75 -51.93 -0.40 0.81 16 34 H 0.06 1.05 7.68 -51.93 -0.40 0.65 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.37 3.33 9.08 45.56 0.41 3.75 16 LS Contribution 317.21 15.07 4.78 4.78 Total: -1.00 -28.78 317.21 -8.58 -37.36 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.81 Total: 7.54 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -1.20 Total: -18.24 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.08 Total: -39.94 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.40 Total: -7.88 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.78 -8.58 -37.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.657 kcal (2) G-P(sol) polarization free energy of solvation -28.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds