Wall clock time and date at job start Sun Mar 29 2020 23:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47014 * 2 1 4 4 H 1.09006 * 109.46810 * 54.85732 * 3 2 1 5 5 C 1.50699 * 109.47306 * 174.86047 * 3 2 1 6 6 H 1.07998 * 120.00005 * 119.99965 * 5 3 2 7 7 C 1.37876 * 119.99712 * 299.72547 * 5 3 2 8 8 N 1.31512 * 120.00034 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99749 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47219 * 59.99793 * 9 7 5 11 11 H 1.48500 * 109.47344 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47197 * 299.99642 * 9 7 5 13 13 N 1.46899 * 109.46958 * 294.86180 * 3 2 1 14 14 C 1.46907 * 111.00234 * 154.18586 * 13 3 2 15 15 C 1.52995 * 109.47226 * 185.44490 * 14 13 3 16 16 H 1.08997 * 109.47205 * 304.99593 * 15 14 13 17 17 C 1.52999 * 109.47451 * 64.99717 * 15 14 13 18 18 C 1.52998 * 109.47046 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47645 * 300.00181 * 18 17 15 20 20 C 1.52999 * 109.46679 * 59.99895 * 19 18 17 21 21 C 1.53000 * 109.46794 * 184.99801 * 15 14 13 22 22 H 1.09003 * 109.47478 * 60.00392 * 21 15 14 23 23 O 1.42895 * 109.47680 * 299.99671 * 21 15 14 24 24 H 1.08991 * 109.47546 * 296.59686 * 1 2 3 25 25 H 1.09000 * 109.46580 * 56.60022 * 1 2 3 26 26 H 1.09002 * 109.46344 * 176.59196 * 1 2 3 27 27 H 1.08996 * 109.47373 * 240.00385 * 2 1 3 28 28 H 1.08996 * 109.47019 * 119.99695 * 2 1 3 29 29 H 0.97001 * 119.99647 * 180.02562 * 8 7 5 30 30 H 1.00896 * 111.00234 * 278.13882 * 13 3 2 31 31 H 1.09002 * 109.46476 * 305.44576 * 14 13 3 32 32 H 1.08994 * 109.46801 * 65.43869 * 14 13 3 33 33 H 1.08997 * 109.47147 * 300.00230 * 17 15 14 34 34 H 1.09004 * 109.46914 * 60.00181 * 17 15 14 35 35 H 1.09007 * 109.46849 * 179.97438 * 18 17 15 36 36 H 1.09004 * 109.46838 * 60.00474 * 18 17 15 37 37 H 1.08997 * 109.46847 * 300.00161 * 19 18 17 38 38 H 1.08995 * 109.47330 * 179.97438 * 19 18 17 39 39 H 1.09006 * 109.46797 * 180.02562 * 20 19 18 40 40 H 1.08997 * 109.47264 * 60.00521 * 20 19 18 41 41 H 0.96695 * 114.00806 * 180.02562 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6034 1.9822 0.8404 5 6 3.5416 1.4445 0.1273 6 1 4.1487 1.8885 -0.6478 7 6 4.1402 0.8846 1.2360 8 7 3.4007 0.3492 2.1826 9 14 6.0015 0.8876 1.3941 10 1 6.4965 2.2877 1.3877 11 1 6.3913 0.2300 2.6672 12 1 6.5965 0.1470 0.2527 13 7 1.6542 2.0982 -1.2566 14 6 1.5562 3.5537 -1.0826 15 6 1.0230 4.1864 -2.3695 16 1 1.6533 3.8905 -3.2081 17 6 -0.4101 3.7108 -2.6160 18 6 -0.9435 4.3441 -3.9026 19 6 -0.9284 5.8679 -3.7654 20 6 0.5048 6.3434 -3.5189 21 6 1.0382 5.7102 -2.2328 22 1 2.0593 6.0491 -2.0573 23 8 0.2119 6.0982 -1.1334 24 1 -0.3634 0.4600 0.9188 25 1 -0.3632 0.5657 -0.8580 26 1 -0.3632 -1.0259 -0.0611 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8219 -0.0444 2.9627 30 1 2.2974 1.8653 -1.9983 31 1 0.8769 3.7761 -0.2597 32 1 2.5426 3.9601 -0.8594 33 1 -0.4210 2.6252 -2.7133 34 1 -1.0405 4.0067 -1.7774 35 1 -1.9644 4.0048 -4.0784 36 1 -0.3132 4.0485 -4.7414 37 1 -1.5586 6.1634 -2.9266 38 1 -1.3079 6.3190 -4.6821 39 1 0.5156 7.4290 -3.4207 40 1 1.1350 6.0479 -4.3577 41 1 0.1741 7.0534 -0.9876 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:43 Heat of formation + Delta-G solvation = -104.081938 kcal Electronic energy + Delta-G solvation = -18393.564446 eV Core-core repulsion = 15691.944289 eV Total energy + Delta-G solvation = -2701.620157 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.30476 -37.88490 -35.91902 -34.65487 -33.30293 -31.24899 -30.64450 -28.24849 -25.65337 -24.27154 -23.29580 -21.89633 -21.43218 -20.49062 -18.69115 -17.69755 -16.84221 -16.49492 -16.02508 -15.61396 -15.26365 -15.04944 -14.72168 -14.55143 -13.94819 -13.65985 -13.53713 -13.19661 -13.12749 -12.86952 -12.74803 -12.67383 -12.55337 -12.29374 -12.05499 -11.74049 -11.63111 -11.50043 -11.43236 -11.27890 -11.00621 -10.70193 -10.48193 -10.44555 -9.01023 -8.05260 -6.28576 1.37983 1.38743 1.46607 2.39399 3.13511 3.46773 3.60093 3.91026 4.01663 4.07445 4.26321 4.43496 4.57393 4.59062 4.63649 4.64804 4.73114 4.76816 4.85040 4.93475 5.00491 5.06511 5.14622 5.17162 5.23450 5.34556 5.39107 5.41980 5.45712 5.51931 5.60124 5.63806 5.71914 5.78706 6.11100 6.20925 6.39444 6.83528 7.01551 7.04819 7.43006 8.91042 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028496 B = 0.006069 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.372189 B = 4612.238194 C = 5197.222215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.100 4.100 3 C 0.222 3.778 4 H -0.010 1.010 5 C -0.561 4.561 6 H 0.050 0.950 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.270 1.270 13 N -0.675 5.675 14 C 0.086 3.914 15 C -0.069 4.069 16 H 0.081 0.919 17 C -0.093 4.093 18 C -0.117 4.117 19 C -0.111 4.111 20 C -0.142 4.142 21 C 0.109 3.891 22 H 0.048 0.952 23 O -0.577 6.577 24 H 0.025 0.975 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.030 0.970 28 H 0.059 0.941 29 H 0.262 0.738 30 H 0.328 0.672 31 H 0.041 0.959 32 H 0.000 1.000 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 10.901 -11.772 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.139 4.139 3 C 0.113 3.887 4 H 0.008 0.992 5 C -0.600 4.600 6 H 0.068 0.932 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.778 3.222 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.195 1.195 13 N -0.303 5.303 14 C -0.044 4.044 15 C -0.088 4.088 16 H 0.099 0.901 17 C -0.131 4.131 18 C -0.154 4.154 19 C -0.149 4.149 20 C -0.180 4.180 21 C 0.050 3.950 22 H 0.066 0.934 23 O -0.384 6.384 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.144 0.856 31 H 0.060 0.940 32 H 0.018 0.982 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -7.092 10.057 -11.448 16.808 hybrid contribution 2.192 0.619 0.762 2.402 sum -4.900 10.677 -10.686 15.881 Atomic orbital electron populations 1.21566 0.96541 0.99874 1.00286 1.21336 0.94306 0.98280 0.99980 1.18888 0.91586 0.91545 0.86643 0.99154 1.22148 0.94058 1.38291 1.05519 0.93208 1.25708 1.02328 0.94740 0.95416 1.70016 1.36563 1.39029 1.09515 0.85703 0.80766 0.78179 0.77520 1.20131 1.20797 1.19472 1.60797 1.54002 1.07389 1.08142 1.21638 0.96778 0.88534 0.97477 1.21133 0.97998 0.93057 0.96578 0.90097 1.21261 0.94494 0.99899 0.97438 1.21553 1.00973 0.95831 0.97052 1.21421 0.96426 0.95332 1.01689 1.22174 0.97567 1.00815 0.97409 1.21782 0.92672 0.94022 0.86529 0.93380 1.86563 1.70942 1.29258 1.51625 0.95540 0.92278 0.93430 0.95079 0.92276 0.92873 0.85610 0.94024 0.98156 0.92420 0.93794 0.91779 0.91702 0.92334 0.90787 0.90093 0.90513 0.76489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 9.84 71.98 0.71 -4.61 16 2 C -0.10 -5.00 5.45 30.60 0.17 -4.84 16 3 C 0.22 11.59 1.97 44.17 0.09 11.68 16 4 H -0.01 -0.57 7.70 -2.38 -0.02 -0.59 16 5 C -0.56 -31.33 8.47 25.60 0.22 -31.12 16 6 H 0.05 2.73 7.73 -2.91 -0.02 2.71 16 7 C 0.02 1.01 5.29 84.65 0.45 1.46 16 8 N -0.91 -53.61 11.32 21.45 0.24 -53.37 16 9 Si 0.95 44.13 29.54 68.60 2.03 46.16 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 N -0.67 -29.16 5.07 -495.44 -2.51 -31.68 16 14 C 0.09 3.43 4.69 86.30 0.40 3.84 16 15 C -0.07 -2.07 2.21 -10.80 -0.02 -2.10 16 16 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 17 C -0.09 -2.72 4.95 30.59 0.15 -2.57 16 18 C -0.12 -2.55 5.92 30.59 0.18 -2.37 16 19 C -0.11 -2.08 5.78 30.59 0.18 -1.91 16 20 C -0.14 -2.57 5.63 30.58 0.17 -2.40 16 21 C 0.11 2.71 3.21 30.58 0.10 2.80 16 22 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 23 O -0.58 -15.13 11.39 -148.98 -1.70 -16.82 16 24 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.06 2.39 7.67 -2.39 -0.02 2.37 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 3.31 5.97 -2.39 -0.01 3.29 16 29 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 30 H 0.33 13.76 8.46 -89.70 -0.76 13.00 16 31 H 0.04 1.87 7.61 -2.39 -0.02 1.85 16 32 H 0.00 0.01 8.12 -2.39 -0.02 -0.01 16 33 H 0.06 1.85 7.75 -2.39 -0.02 1.83 16 34 H 0.04 1.44 7.68 -2.39 -0.02 1.43 16 35 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.21 7.68 -2.39 -0.02 1.19 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 41 H 0.39 6.48 9.08 -74.06 -0.67 5.80 16 Total: -1.00 -62.93 317.21 0.40 -62.53 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.44 Total: 25.30 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 2.79 Total: -32.12 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -2.27 Total: -85.05 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -1.70 Total: -16.82 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -62.93 0.40 -62.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.556 kcal (2) G-P(sol) polarization free energy of solvation -62.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds