Wall clock time and date at job start Sun Mar 29 2020 23:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47099 * 2 1 4 4 H 1.09003 * 109.47085 * 54.49170 * 3 2 1 5 5 C 1.50701 * 109.47325 * 174.48864 * 3 2 1 6 6 H 1.07994 * 120.00286 * 119.99924 * 5 3 2 7 7 C 1.37883 * 119.99966 * 300.00198 * 5 3 2 8 8 N 1.31513 * 119.99647 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00026 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46864 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46774 * 120.00078 * 9 7 5 12 12 H 1.48503 * 109.47016 * 240.00122 * 9 7 5 13 13 N 1.46896 * 109.47388 * 294.49045 * 3 2 1 14 14 C 1.46901 * 111.00381 * 152.95052 * 13 3 2 15 15 H 1.09002 * 109.46870 * 33.64485 * 14 13 3 16 16 C 1.52999 * 109.47121 * 153.64697 * 14 13 3 17 17 C 1.53001 * 109.46881 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47414 * 299.99983 * 17 16 14 19 19 H 1.08994 * 109.47003 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.46820 * 300.00216 * 18 17 16 21 21 C 1.42894 * 113.99561 * 209.99716 * 20 18 17 22 22 C 1.53001 * 109.47131 * 59.99749 * 18 17 16 23 23 C 1.53000 * 109.47123 * 273.64678 * 14 13 3 24 24 H 1.08997 * 109.47001 * 300.72853 * 1 2 3 25 25 H 1.08996 * 109.47200 * 60.72903 * 1 2 3 26 26 H 1.09005 * 109.46842 * 180.72732 * 1 2 3 27 27 H 1.08996 * 109.47107 * 240.00102 * 2 1 3 28 28 H 1.09001 * 109.47093 * 120.00041 * 2 1 3 29 29 H 0.97006 * 119.99547 * 179.97438 * 8 7 5 30 30 H 1.00903 * 110.99792 * 28.99764 * 13 3 2 31 31 H 1.09004 * 109.47015 * 300.00108 * 16 14 13 32 32 H 1.08998 * 109.46945 * 60.00176 * 16 14 13 33 33 H 1.09006 * 109.46753 * 60.00058 * 17 16 14 34 34 H 1.09004 * 109.46775 * 179.97438 * 17 16 14 35 35 H 1.09001 * 109.47500 * 60.00257 * 21 20 18 36 36 H 1.09007 * 109.46661 * 179.97438 * 21 20 18 37 37 H 1.09001 * 109.47316 * 299.99686 * 21 20 18 38 38 H 1.09006 * 109.47036 * 59.99925 * 22 18 17 39 39 H 1.08995 * 109.47262 * 180.02562 * 22 18 17 40 40 H 1.08990 * 109.47434 * 299.99779 * 23 14 13 41 41 H 1.09005 * 109.46796 * 59.99942 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5984 1.9840 0.8366 5 6 3.5408 1.4447 0.1365 6 1 4.1526 1.8870 -0.6358 7 6 4.1329 0.8821 1.2473 8 7 3.3879 0.3430 2.1875 9 14 5.9933 0.8842 1.4162 10 1 6.5970 1.5460 0.2317 11 1 6.3779 1.6235 2.6453 12 1 6.4838 -0.5146 1.5059 13 7 1.6620 2.0956 -1.2603 14 6 1.5344 3.5482 -1.0830 15 1 2.2603 3.8893 -0.3449 16 6 1.7956 4.2498 -2.4173 17 6 1.6633 5.7628 -2.2324 18 6 0.2504 6.0960 -1.7491 19 1 0.1561 7.1739 -1.6178 20 8 -0.7017 5.6493 -2.7166 21 6 -1.8962 6.4322 -2.7609 22 6 -0.0109 5.3944 -0.4148 23 6 0.1212 3.8809 -0.6000 24 1 -0.3633 0.5251 0.8834 25 1 -0.3633 0.5024 -0.8964 26 1 -0.3633 -1.0276 0.0130 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8045 -0.0531 2.9689 30 1 0.8108 1.7004 -1.6312 31 1 2.8024 4.0128 -2.7614 32 1 1.0696 3.9087 -3.1554 33 1 2.3896 6.1035 -1.4944 34 1 1.8499 6.2627 -3.1830 35 1 -1.6457 7.4636 -3.0087 36 1 -2.5668 6.0291 -3.5200 37 1 -2.3873 6.4011 -1.7883 38 1 0.7154 5.7351 0.3232 39 1 -1.0175 5.6313 -0.0707 40 1 -0.6047 3.5399 -1.3380 41 1 -0.0648 3.3810 0.3507 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164165.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:20 Heat of formation + Delta-G solvation = -69.012331 kcal Electronic energy + Delta-G solvation = -18562.155173 eV Core-core repulsion = 15862.055748 eV Total energy + Delta-G solvation = -2700.099425 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.24412 -36.83577 -34.80034 -32.09567 -30.89886 -30.40896 -27.91769 -26.51912 -25.66520 -22.80566 -22.26437 -21.09234 -19.65798 -19.10127 -16.17374 -16.11761 -15.82065 -15.25655 -14.86261 -14.39434 -13.77285 -13.45869 -13.26192 -12.98768 -12.71673 -12.34784 -12.19685 -11.88153 -11.79685 -11.59653 -11.16985 -11.07445 -10.83345 -10.75530 -10.54857 -10.36549 -10.11180 -9.97248 -9.88260 -9.60435 -9.40101 -9.23225 -8.94928 -8.28871 -7.05183 -5.90431 -3.93879 3.34670 3.42576 3.48251 3.87184 4.50066 4.91623 5.01173 5.12660 5.26894 5.31695 5.35814 5.42046 5.57808 5.60502 5.70256 5.82621 5.88018 5.96908 6.12205 6.22717 6.23365 6.26925 6.33691 6.39939 6.47297 6.59267 6.64828 6.90604 6.91777 7.00222 7.17997 7.27361 7.31341 7.62218 7.86150 8.01070 8.44580 8.50852 8.89255 9.15415 9.71015 11.14784 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028995 B = 0.006416 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.441958 B = 4362.973251 C = 4908.527829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.218 3.782 4 H 0.002 0.998 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.682 5.682 14 C 0.097 3.903 15 H 0.076 0.924 16 C -0.100 4.100 17 C -0.115 4.115 18 C 0.091 3.909 19 H 0.052 0.948 20 O -0.377 6.377 21 C 0.031 3.969 22 C -0.135 4.135 23 C -0.139 4.139 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.040 0.960 28 H 0.098 0.902 29 H 0.257 0.743 30 H 0.317 0.683 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.036 0.964 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.303 10.362 -6.373 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.312 5.312 14 C -0.014 4.014 15 H 0.094 0.906 16 C -0.138 4.138 17 C -0.153 4.153 18 C 0.033 3.967 19 H 0.071 0.929 20 O -0.295 6.295 21 C -0.066 4.066 22 C -0.174 4.174 23 C -0.178 4.178 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.116 0.884 29 H 0.067 0.933 30 H 0.135 0.865 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.576 10.120 -6.547 14.236 hybrid contribution -0.059 0.266 0.973 1.010 sum -7.635 10.386 -5.574 14.044 Atomic orbital electron populations 1.21877 0.99669 0.99442 0.99654 1.21781 0.91190 1.00628 1.02943 1.19153 0.95225 0.89806 0.84708 0.98006 1.21295 0.91444 1.35896 1.04050 0.92067 1.24963 0.97952 0.95818 0.95939 1.69891 1.34476 1.39812 1.09653 0.86525 0.86060 0.77543 0.77776 1.19798 1.21339 1.21207 1.60764 1.37070 1.01524 1.31844 1.21440 0.94061 0.89920 0.95983 0.90563 1.21404 1.01875 0.92349 0.98193 1.21649 0.93992 0.98426 1.01189 1.22154 0.89679 0.96269 0.88575 0.92947 1.87965 1.27796 1.55059 1.58724 1.22727 0.87900 0.94941 1.01019 1.21967 1.01138 0.97422 0.96867 1.22181 0.99774 0.94648 1.01240 0.93993 0.94550 0.94549 0.94165 0.88365 0.93274 0.86546 0.91680 0.91963 0.90842 0.91923 0.94562 0.90056 0.94420 0.91140 0.92749 0.91977 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.74 37.16 0.36 -2.60 16 2 C -0.13 -3.05 5.35 -26.73 -0.14 -3.19 16 3 C 0.22 5.48 1.82 -68.87 -0.13 5.35 16 4 H 0.00 0.06 7.22 -51.93 -0.37 -0.31 16 5 C -0.49 -13.60 8.61 -34.44 -0.30 -13.89 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.80 11.29 55.43 0.63 -25.17 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 N -0.68 -14.77 6.05 -100.95 -0.61 -15.38 16 14 C 0.10 1.84 2.27 -67.71 -0.15 1.69 16 15 H 0.08 1.64 7.70 -51.93 -0.40 1.24 16 16 C -0.10 -1.67 5.38 -26.73 -0.14 -1.81 16 17 C -0.11 -1.58 5.66 -26.73 -0.15 -1.73 16 18 C 0.09 1.19 2.92 -26.73 -0.08 1.11 16 19 H 0.05 0.59 7.78 -51.93 -0.40 0.18 16 20 O -0.38 -5.17 9.00 -35.23 -0.32 -5.48 16 21 C 0.03 0.31 10.82 101.05 1.09 1.41 16 22 C -0.14 -1.91 5.63 -26.70 -0.15 -2.06 16 23 C -0.14 -2.35 5.01 -26.71 -0.13 -2.49 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.66 6.48 -51.93 -0.34 0.32 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 30 H 0.32 6.44 6.22 -39.29 -0.24 6.20 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.06 7.68 -51.93 -0.40 0.66 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.36 7.87 -51.93 -0.41 -0.05 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.70 7.87 -51.93 -0.41 0.29 16 40 H 0.06 1.05 7.67 -51.93 -0.40 0.65 16 41 H 0.06 1.06 7.56 -51.93 -0.39 0.67 16 LS Contribution 315.04 15.07 4.75 4.75 Total: -1.00 -28.83 315.04 -8.01 -36.84 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -7.42 Total: 4.58 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -0.01 Total: -16.82 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.01 Total: -40.55 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.32 Total: -5.48 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.83 -8.01 -36.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164165.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.172 kcal (2) G-P(sol) polarization free energy of solvation -28.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds