Wall clock time and date at job start Sun Mar 29 2020 23:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47099 * 2 1 4 4 H 1.09003 * 109.47085 * 54.49170 * 3 2 1 5 5 C 1.50701 * 109.47325 * 174.48864 * 3 2 1 6 6 H 1.07994 * 120.00286 * 119.99924 * 5 3 2 7 7 C 1.37883 * 119.99966 * 300.00198 * 5 3 2 8 8 N 1.31513 * 119.99647 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00026 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46864 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46774 * 120.00078 * 9 7 5 12 12 H 1.48503 * 109.47016 * 240.00122 * 9 7 5 13 13 N 1.46896 * 109.47388 * 294.49045 * 3 2 1 14 14 C 1.46901 * 111.00381 * 152.95052 * 13 3 2 15 15 H 1.09002 * 109.46870 * 33.64485 * 14 13 3 16 16 C 1.52999 * 109.47121 * 153.64697 * 14 13 3 17 17 C 1.53001 * 109.46881 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47414 * 299.99983 * 17 16 14 19 19 H 1.08994 * 109.47003 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.46820 * 300.00216 * 18 17 16 21 21 C 1.42894 * 113.99561 * 209.99716 * 20 18 17 22 22 C 1.53001 * 109.47131 * 59.99749 * 18 17 16 23 23 C 1.53000 * 109.47123 * 273.64678 * 14 13 3 24 24 H 1.08997 * 109.47001 * 300.72853 * 1 2 3 25 25 H 1.08996 * 109.47200 * 60.72903 * 1 2 3 26 26 H 1.09005 * 109.46842 * 180.72732 * 1 2 3 27 27 H 1.08996 * 109.47107 * 240.00102 * 2 1 3 28 28 H 1.09001 * 109.47093 * 120.00041 * 2 1 3 29 29 H 0.97006 * 119.99547 * 179.97438 * 8 7 5 30 30 H 1.00903 * 110.99792 * 28.99764 * 13 3 2 31 31 H 1.09004 * 109.47015 * 300.00108 * 16 14 13 32 32 H 1.08998 * 109.46945 * 60.00176 * 16 14 13 33 33 H 1.09006 * 109.46753 * 60.00058 * 17 16 14 34 34 H 1.09004 * 109.46775 * 179.97438 * 17 16 14 35 35 H 1.09001 * 109.47500 * 60.00257 * 21 20 18 36 36 H 1.09007 * 109.46661 * 179.97438 * 21 20 18 37 37 H 1.09001 * 109.47316 * 299.99686 * 21 20 18 38 38 H 1.09006 * 109.47036 * 59.99925 * 22 18 17 39 39 H 1.08995 * 109.47262 * 180.02562 * 22 18 17 40 40 H 1.08990 * 109.47434 * 299.99779 * 23 14 13 41 41 H 1.09005 * 109.46796 * 59.99942 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5984 1.9840 0.8366 5 6 3.5408 1.4447 0.1365 6 1 4.1526 1.8870 -0.6358 7 6 4.1329 0.8821 1.2473 8 7 3.3879 0.3430 2.1875 9 14 5.9933 0.8842 1.4162 10 1 6.5970 1.5460 0.2317 11 1 6.3779 1.6235 2.6453 12 1 6.4838 -0.5146 1.5059 13 7 1.6620 2.0956 -1.2603 14 6 1.5344 3.5482 -1.0830 15 1 2.2603 3.8893 -0.3449 16 6 1.7956 4.2498 -2.4173 17 6 1.6633 5.7628 -2.2324 18 6 0.2504 6.0960 -1.7491 19 1 0.1561 7.1739 -1.6178 20 8 -0.7017 5.6493 -2.7166 21 6 -1.8962 6.4322 -2.7609 22 6 -0.0109 5.3944 -0.4148 23 6 0.1212 3.8809 -0.6000 24 1 -0.3633 0.5251 0.8834 25 1 -0.3633 0.5024 -0.8964 26 1 -0.3633 -1.0276 0.0130 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8045 -0.0531 2.9689 30 1 0.8108 1.7004 -1.6312 31 1 2.8024 4.0128 -2.7614 32 1 1.0696 3.9087 -3.1554 33 1 2.3896 6.1035 -1.4944 34 1 1.8499 6.2627 -3.1830 35 1 -1.6457 7.4636 -3.0087 36 1 -2.5668 6.0291 -3.5200 37 1 -2.3873 6.4011 -1.7883 38 1 0.7154 5.7351 0.3232 39 1 -1.0175 5.6313 -0.0707 40 1 -0.6047 3.5399 -1.3380 41 1 -0.0648 3.3810 0.3507 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164165.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:20 Heat of formation + Delta-G solvation = -86.914444 kcal Electronic energy + Delta-G solvation = -18562.931467 eV Core-core repulsion = 15862.055748 eV Total energy + Delta-G solvation = -2700.875719 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44686 -38.32113 -36.33001 -34.05386 -32.52699 -31.65523 -29.50295 -27.84093 -27.07446 -24.67309 -23.54221 -22.45207 -21.50710 -20.47611 -18.27596 -17.22366 -17.03851 -16.73831 -16.22454 -15.96394 -15.51082 -14.85695 -14.53520 -14.51528 -14.34803 -13.76897 -13.39748 -13.28395 -13.21534 -13.08354 -12.97679 -12.72569 -12.50672 -12.18249 -12.01680 -11.97472 -11.74166 -11.53794 -11.48399 -11.33559 -11.04466 -10.80880 -10.41967 -10.33738 -8.86388 -8.04522 -6.16486 1.40032 1.42064 1.54280 2.45129 2.96062 3.19933 3.65960 3.86406 3.87020 4.12789 4.30001 4.40755 4.48208 4.49800 4.56439 4.57444 4.65367 4.67501 4.70907 4.72162 4.83999 4.89300 4.99283 5.06036 5.09487 5.15964 5.24097 5.26917 5.29876 5.39675 5.52189 5.55534 5.66886 5.79771 5.93389 6.39965 6.41055 6.61758 6.98932 7.07473 7.52886 8.98443 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028995 B = 0.006416 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.441958 B = 4362.973251 C = 4908.527829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.228 3.772 4 H -0.030 1.030 5 C -0.508 4.508 6 H 0.047 0.953 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.955 3.045 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.280 1.280 13 N -0.686 5.686 14 C 0.097 3.903 15 H 0.045 0.955 16 C -0.091 4.091 17 C -0.112 4.112 18 C 0.095 3.905 19 H 0.081 0.919 20 O -0.399 6.399 21 C 0.024 3.976 22 C -0.133 4.133 23 C -0.129 4.129 24 H 0.035 0.965 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.259 0.741 30 H 0.325 0.675 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.042 0.958 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.942 11.659 -7.266 16.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C 0.120 3.880 4 H -0.013 1.013 5 C -0.547 4.547 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.562 5.562 9 Si 0.781 3.219 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.206 1.206 13 N -0.316 5.316 14 C -0.013 4.013 15 H 0.063 0.937 16 C -0.129 4.129 17 C -0.150 4.150 18 C 0.037 3.963 19 H 0.099 0.901 20 O -0.318 6.318 21 C -0.072 4.072 22 C -0.172 4.172 23 C -0.168 4.168 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.143 0.857 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.231 11.431 -7.452 15.936 hybrid contribution 0.107 -0.133 1.232 1.244 sum -8.124 11.298 -6.220 15.243 Atomic orbital electron populations 1.21731 0.96379 1.01060 1.00250 1.21618 0.94160 0.99322 1.01066 1.18890 0.93783 0.90375 0.85001 1.01283 1.21526 0.92957 1.36177 1.04024 0.93476 1.25680 1.02244 0.95409 0.95593 1.70016 1.36105 1.40105 1.09955 0.85555 0.80886 0.77691 0.77776 1.19583 1.20679 1.20595 1.60700 1.37755 1.03127 1.30059 1.21450 0.94708 0.88400 0.96777 0.93702 1.21288 1.00836 0.94537 0.96282 1.21648 0.95072 0.95903 1.02398 1.22111 0.89022 0.97589 0.87545 0.90099 1.87935 1.28933 1.56289 1.58686 1.22930 0.86870 0.95599 1.01792 1.21967 1.02160 0.95025 0.98012 1.22008 0.98001 0.96982 0.99823 0.94605 0.92706 0.92364 0.94684 0.91426 0.93151 0.85673 0.93162 0.92090 0.90493 0.90112 0.92868 0.89026 0.93893 0.91267 0.91081 0.91703 0.94729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 9.74 71.98 0.70 -4.67 16 2 C -0.12 -6.02 5.35 30.60 0.16 -5.86 16 3 C 0.23 11.80 1.82 44.17 0.08 11.88 16 4 H -0.03 -1.74 7.22 -2.39 -0.02 -1.76 16 5 C -0.51 -29.15 8.61 25.60 0.22 -28.93 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 7 C 0.01 0.48 5.29 84.66 0.45 0.93 16 8 N -0.92 -54.07 11.29 21.45 0.24 -53.83 16 9 Si 0.95 45.12 29.54 68.60 2.03 47.14 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 N -0.69 -30.30 6.05 -473.31 -2.87 -33.17 16 14 C 0.10 3.76 2.27 44.91 0.10 3.86 16 15 H 0.04 2.01 7.70 -2.39 -0.02 1.99 16 16 C -0.09 -3.00 5.38 30.59 0.16 -2.83 16 17 C -0.11 -2.88 5.66 30.59 0.17 -2.70 16 18 C 0.09 2.22 2.92 30.59 0.09 2.31 16 19 H 0.08 1.49 7.78 -2.39 -0.02 1.47 16 20 O -0.40 -9.85 9.00 -148.98 -1.34 -11.19 16 21 C 0.02 0.42 10.82 113.37 1.23 1.64 16 22 C -0.13 -3.54 5.63 30.61 0.17 -3.37 16 23 C -0.13 -4.34 5.01 30.61 0.15 -4.19 16 24 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.93 6.48 -2.39 -0.02 1.91 16 26 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.07 3.74 5.94 -2.39 -0.01 3.73 16 29 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 30 H 0.32 13.21 6.22 -89.69 -0.56 12.66 16 31 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.06 2.02 7.68 -2.39 -0.02 2.00 16 33 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.08 1.80 8.14 -2.38 -0.02 1.79 16 35 H 0.05 0.73 8.08 -2.39 -0.02 0.71 16 36 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.04 0.69 7.87 -2.39 -0.02 0.67 16 38 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.07 1.66 7.87 -2.39 -0.02 1.64 16 40 H 0.06 2.14 7.67 -2.39 -0.02 2.12 16 41 H 0.03 1.30 7.56 -2.38 -0.02 1.28 16 Total: -1.00 -62.97 315.04 2.18 -60.80 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.42 Total: 22.17 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 3.69 Total: -31.92 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -2.62 Total: -87.00 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -1.34 Total: -11.19 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -62.97 2.18 -60.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164165.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.116 kcal (2) G-P(sol) polarization free energy of solvation -62.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds