Wall clock time and date at job start Sun Mar 29 2020 23:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47212 * 2 1 4 4 H 1.09003 * 109.47043 * 304.09853 * 3 2 1 5 5 C 1.50700 * 109.47131 * 184.10413 * 3 2 1 6 6 H 1.07998 * 120.00050 * 239.99922 * 5 3 2 7 7 C 1.37879 * 120.00210 * 59.99577 * 5 3 2 8 8 N 1.31515 * 120.00062 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00007 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47150 * 60.00550 * 9 7 5 11 11 H 1.48500 * 109.47300 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47344 * 300.00159 * 9 7 5 13 13 N 1.46901 * 109.47478 * 64.10224 * 3 2 1 14 14 C 1.46895 * 110.99871 * 203.97018 * 13 3 2 15 15 H 1.08991 * 109.47651 * 325.63482 * 14 13 3 16 16 C 1.53006 * 109.46817 * 85.64110 * 14 13 3 17 17 C 1.53004 * 109.46757 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.46838 * 299.99322 * 17 16 14 19 19 H 1.09002 * 109.46960 * 180.02562 * 18 17 16 20 20 O 1.42899 * 109.47305 * 300.00266 * 18 17 16 21 21 C 1.42904 * 114.00122 * 270.00530 * 20 18 17 22 22 C 1.52994 * 109.47183 * 60.00394 * 18 17 16 23 23 C 1.52999 * 109.47101 * 300.00034 * 22 18 17 24 24 H 1.09001 * 109.47242 * 174.92426 * 1 2 3 25 25 H 1.09003 * 109.47618 * 294.92866 * 1 2 3 26 26 H 1.09001 * 109.46914 * 54.92808 * 1 2 3 27 27 H 1.09000 * 109.47148 * 239.99806 * 2 1 3 28 28 H 1.09002 * 109.47301 * 119.99998 * 2 1 3 29 29 H 0.96998 * 120.00203 * 179.97438 * 8 7 5 30 30 H 1.00900 * 110.99413 * 80.01318 * 13 3 2 31 31 H 1.09006 * 109.46825 * 299.99114 * 16 14 13 32 32 H 1.08998 * 109.47389 * 59.99672 * 16 14 13 33 33 H 1.09002 * 109.46878 * 179.97438 * 17 16 14 34 34 H 1.08998 * 109.47395 * 59.99730 * 17 16 14 35 35 H 1.08996 * 109.47133 * 180.02562 * 21 20 18 36 36 H 1.09005 * 109.46375 * 299.99256 * 21 20 18 37 37 H 1.08998 * 109.47191 * 59.99752 * 21 20 18 38 38 H 1.08997 * 109.47277 * 179.97438 * 22 18 17 39 39 H 1.08999 * 109.47450 * 59.99532 * 22 18 17 40 40 H 1.09005 * 109.47215 * 299.99867 * 23 22 18 41 41 H 1.09002 * 109.47068 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6179 1.9771 -0.8510 5 6 3.5435 1.4437 -0.1017 6 1 4.1373 1.8923 0.6809 7 6 4.1611 0.8720 -1.1938 8 7 3.4381 0.3260 -2.1471 9 14 6.0249 0.8728 -1.3195 10 1 6.5995 0.1440 -0.1603 11 1 6.4364 0.2029 -2.5792 12 1 6.5204 2.2727 -1.3191 13 7 1.6329 2.1059 1.2459 14 6 1.5804 3.5637 1.0732 15 1 2.3634 3.8762 0.3824 16 6 0.2146 3.9616 0.5098 17 6 0.1597 5.4801 0.3305 18 6 0.3712 6.1614 1.6841 19 1 0.3316 7.2432 1.5564 20 8 -0.6555 5.7511 2.5895 21 6 -1.8155 6.5855 2.5696 22 6 1.7368 5.7635 2.2475 23 6 1.7918 4.2450 2.4267 24 1 -0.3634 -1.0236 -0.0909 25 1 -0.3634 0.4331 0.9319 26 1 -0.3633 0.5905 -0.8411 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8725 -0.0759 -2.9156 30 1 2.2458 1.8536 2.0067 31 1 0.0638 3.4758 -0.4543 32 1 -0.5684 3.6491 1.2007 33 1 -0.8132 5.7635 -0.0712 34 1 0.9427 5.7930 -0.3601 35 1 -2.5470 6.2078 3.2840 36 1 -1.5354 7.6034 2.8409 37 1 -2.2485 6.5820 1.5694 38 1 1.8877 6.2492 3.2115 39 1 2.5199 6.0763 1.5569 40 1 1.0087 3.9320 3.1173 41 1 2.7649 3.9615 2.8276 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:22 Heat of formation + Delta-G solvation = -72.282483 kcal Electronic energy + Delta-G solvation = -18555.632701 eV Core-core repulsion = 15855.391472 eV Total energy + Delta-G solvation = -2700.241229 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.18375 -36.71377 -34.72831 -32.05134 -30.91294 -30.41632 -28.00093 -26.44683 -25.49959 -22.80694 -22.28310 -21.02237 -19.31355 -19.08149 -16.50262 -16.12921 -15.64654 -15.22065 -14.87898 -14.48799 -13.60968 -13.51051 -13.09245 -12.87493 -12.80820 -12.41025 -11.99855 -11.75403 -11.64762 -11.35084 -11.12550 -11.09085 -10.92852 -10.71590 -10.62877 -10.43973 -10.02722 -9.97430 -9.86385 -9.51982 -9.33516 -9.18160 -8.93033 -8.31900 -7.12619 -5.94375 -4.07454 3.29944 3.35178 3.37565 3.90282 4.42672 4.94655 5.00741 5.13419 5.28436 5.31269 5.36520 5.40957 5.62085 5.64107 5.81147 5.87764 5.92104 5.93057 6.08702 6.25867 6.41660 6.44666 6.46949 6.57608 6.68317 6.73182 6.80109 6.89802 7.10217 7.21910 7.25410 7.34716 7.54259 7.68248 7.83953 8.16930 8.26188 8.44109 8.78560 9.07367 9.59917 11.05123 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.006466 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.840235 B = 4329.036658 C = 4873.275933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.686 5.686 14 C 0.095 3.905 15 H 0.043 0.957 16 C -0.096 4.096 17 C -0.140 4.140 18 C 0.092 3.908 19 H 0.052 0.948 20 O -0.375 6.375 21 C 0.031 3.969 22 C -0.112 4.112 23 C -0.114 4.114 24 H 0.022 0.978 25 H 0.047 0.953 26 H 0.035 0.965 27 H 0.088 0.912 28 H 0.029 0.971 29 H 0.261 0.739 30 H 0.326 0.674 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.035 0.965 37 H 0.038 0.962 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 10.687 6.483 14.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.315 5.315 14 C -0.015 4.015 15 H 0.061 0.939 16 C -0.134 4.134 17 C -0.178 4.178 18 C 0.034 3.966 19 H 0.070 0.930 20 O -0.294 6.294 21 C -0.066 4.066 22 C -0.150 4.150 23 C -0.152 4.152 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.143 0.857 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.440 10.326 6.291 14.196 hybrid contribution 1.991 0.469 -0.452 2.095 sum -5.448 10.795 5.839 13.428 Atomic orbital electron populations 1.21679 0.99020 0.98086 1.00415 1.21493 0.92073 0.99413 1.01517 1.19158 0.92337 0.91023 0.86704 0.94997 1.21869 0.92901 1.37741 1.05739 0.93041 1.24929 0.97793 0.95096 0.95698 1.69871 1.34882 1.38117 1.09558 0.86745 0.86319 0.78104 0.77321 1.20320 1.21279 1.20488 1.60885 1.56441 1.05118 1.09031 1.21281 0.95812 0.89626 0.94786 0.93912 1.21365 0.98386 0.92570 1.01103 1.22031 1.01322 0.98061 0.96435 1.22127 0.88296 0.96529 0.89646 0.93012 1.87972 1.26459 1.53085 1.61904 1.22726 0.88719 0.94081 1.01026 1.21596 0.94805 0.97718 1.00859 1.21614 1.01386 0.93643 0.98560 0.95850 0.93386 0.94558 0.89344 0.95216 0.92914 0.85741 0.92397 0.91449 0.92520 0.91380 0.90039 0.94663 0.94338 0.91961 0.90943 0.90977 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.73 37.16 0.36 -2.50 16 2 C -0.11 -2.60 5.44 -26.73 -0.15 -2.75 16 3 C 0.22 5.39 1.80 -68.86 -0.12 5.26 16 4 H 0.03 0.89 7.16 -51.93 -0.37 0.51 16 5 C -0.54 -14.74 8.22 -34.44 -0.28 -15.02 16 6 H 0.05 1.39 7.76 -52.49 -0.41 0.98 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -25.24 11.30 55.43 0.63 -24.61 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 N -0.69 -14.65 5.56 -100.96 -0.56 -15.21 16 14 C 0.10 1.82 2.30 -67.71 -0.16 1.66 16 15 H 0.04 0.93 7.59 -51.93 -0.39 0.53 16 16 C -0.10 -1.70 5.27 -26.73 -0.14 -1.84 16 17 C -0.14 -2.02 5.63 -26.73 -0.15 -2.17 16 18 C 0.09 1.21 2.92 -26.73 -0.08 1.13 16 19 H 0.05 0.59 7.79 -51.93 -0.40 0.18 16 20 O -0.38 -5.24 9.00 -35.23 -0.32 -5.55 16 21 C 0.03 0.32 10.82 101.05 1.09 1.42 16 22 C -0.11 -1.53 5.66 -26.73 -0.15 -1.68 16 23 C -0.11 -1.85 5.04 -26.73 -0.13 -1.98 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.98 7.87 -51.93 -0.41 0.57 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.09 2.40 5.97 -51.93 -0.31 2.09 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.33 6.95 8.05 -39.29 -0.32 6.63 16 31 H 0.06 1.13 7.46 -51.93 -0.39 0.74 16 32 H 0.07 1.23 7.68 -51.93 -0.40 0.83 16 33 H 0.06 0.75 7.87 -51.93 -0.41 0.34 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 37 H 0.04 0.38 7.87 -51.93 -0.41 -0.03 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.21 7.68 -51.93 -0.40 0.81 16 41 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 LS Contribution 317.10 15.07 4.78 4.78 Total: -1.00 -28.17 317.10 -8.05 -36.22 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.55 Total: 4.84 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 0.00 Total: -16.71 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.07 Total: -39.83 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.32 Total: -5.55 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.17 -8.05 -36.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.066 kcal (2) G-P(sol) polarization free energy of solvation -28.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds