Wall clock time and date at job start Sun Mar 29 2020 23:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47074 * 2 1 4 4 H 1.08998 * 109.47202 * 186.70788 * 3 2 1 5 5 C 1.50699 * 109.46972 * 306.70994 * 3 2 1 6 6 H 1.08005 * 119.99679 * 120.00196 * 5 3 2 7 7 C 1.37872 * 120.00404 * 299.99863 * 5 3 2 8 8 N 1.31518 * 120.00691 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99552 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.46773 * 90.00291 * 9 7 5 11 11 H 1.48495 * 109.47231 * 330.00143 * 9 7 5 12 12 H 1.48503 * 109.47149 * 209.99961 * 9 7 5 13 13 N 1.46904 * 109.47099 * 66.70985 * 3 2 1 14 14 C 1.47803 * 110.99985 * 49.26892 * 13 3 2 15 15 C 1.45863 * 112.91529 * 153.86461 * 14 13 3 16 16 C 1.54510 * 111.58881 * 61.33357 * 15 14 13 17 17 C 1.50462 * 108.85002 * 282.80462 * 16 15 14 18 18 C 1.54292 * 113.03758 * 92.15671 * 17 16 15 19 19 C 1.52996 * 108.91808 * 79.02340 * 18 17 16 20 20 O 1.42897 * 108.92026 * 197.67232 * 18 17 16 21 21 C 1.44274 * 110.99875 * 287.29012 * 13 3 2 22 22 H 1.08998 * 109.47445 * 47.86154 * 1 2 3 23 23 H 1.09001 * 109.47127 * 167.86382 * 1 2 3 24 24 H 1.09003 * 109.46798 * 287.85800 * 1 2 3 25 25 H 1.09001 * 109.47035 * 240.00035 * 2 1 3 26 26 H 1.08995 * 109.47226 * 120.00063 * 2 1 3 27 27 H 0.96999 * 120.00177 * 179.97438 * 8 7 5 28 28 H 1.08993 * 108.79446 * 274.75263 * 14 13 3 29 29 H 1.09002 * 108.79218 * 33.09873 * 14 13 3 30 30 H 1.09003 * 109.05713 * 181.87244 * 15 14 13 31 31 H 1.09000 * 109.05788 * 300.78666 * 15 14 13 32 32 H 1.08996 * 109.57332 * 42.61324 * 16 15 14 33 33 H 1.08993 * 109.57506 * 162.99670 * 16 15 14 34 34 H 1.09004 * 108.76809 * 213.07133 * 17 16 15 35 35 H 1.09004 * 108.77583 * 331.23497 * 17 16 15 36 36 H 1.08994 * 109.47532 * 60.00541 * 19 18 17 37 37 H 1.09004 * 109.47377 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.47054 * 300.00028 * 19 18 17 39 39 H 0.96701 * 113.99905 * 299.99443 * 20 18 17 40 40 H 1.08999 * 108.97970 * 339.95494 * 21 13 3 41 41 H 1.08999 * 108.97802 * 98.66653 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1234 1.4449 -0.1200 5 6 1.4067 2.1992 -1.1390 6 1 0.8024 3.0714 -0.9380 7 6 1.5988 1.7780 -2.4377 8 7 1.0465 2.4387 -3.4319 9 14 2.6435 0.2690 -2.7853 10 1 1.7820 -0.9406 -2.7833 11 1 3.6859 0.1362 -1.7361 12 1 3.2931 0.4118 -4.1131 13 7 1.6869 2.0867 1.2722 14 6 2.0703 1.2381 2.4199 15 6 2.3181 2.0051 3.6356 16 6 1.0562 2.7715 4.0914 17 6 0.8854 3.9873 3.2217 18 6 -0.0145 3.7305 1.9949 19 6 -1.4786 3.7676 2.4372 20 8 0.2052 4.7655 1.0344 21 6 0.2734 2.3689 1.3340 22 1 -0.3634 0.6895 -0.7620 23 1 -0.3633 -1.0047 -0.2161 24 1 -0.3633 0.3152 0.9782 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.1820 2.1425 -4.3456 28 1 1.2692 0.5245 2.6121 29 1 2.9757 0.6881 2.1631 30 1 2.6270 1.3245 4.4291 31 1 3.1201 2.7191 3.4487 32 1 0.1826 2.1271 3.9940 33 1 1.1713 3.0792 5.1306 34 1 0.4452 4.7863 3.8184 35 1 1.8667 4.3115 2.8751 36 1 -1.7053 4.7455 2.8618 37 1 -2.1229 3.5866 1.5768 38 1 -1.6509 2.9965 3.1882 39 1 0.0050 5.6536 1.3604 40 1 -0.1318 2.3733 0.3221 41 1 -0.2198 1.5847 1.9083 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164361.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:57 Heat of formation + Delta-G solvation = -34.065535 kcal Electronic energy + Delta-G solvation = -19686.581403 eV Core-core repulsion = 16987.997385 eV Total energy + Delta-G solvation = -2698.584018 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.61387 -36.71832 -34.89081 -32.17647 -31.41559 -30.70584 -28.01841 -27.08363 -25.32032 -23.41755 -22.45890 -20.71870 -19.11230 -18.80698 -16.57486 -16.12408 -15.65861 -15.14193 -14.61641 -14.23628 -13.47334 -13.35674 -13.21850 -12.88269 -12.85170 -12.67298 -12.15748 -11.82232 -11.63025 -11.53098 -11.22908 -10.93722 -10.86298 -10.69753 -10.42053 -10.26361 -10.14658 -9.98313 -9.94775 -9.44042 -9.31598 -9.20071 -8.77298 -8.49781 -7.19901 -5.97769 -3.93852 3.30926 3.41309 3.42787 4.46799 4.72011 4.82710 5.06905 5.11455 5.32505 5.47400 5.50476 5.61372 5.66634 5.78934 5.91322 5.96181 6.02998 6.04779 6.08761 6.21123 6.22929 6.32810 6.33139 6.40749 6.54081 6.58855 6.65369 6.70338 6.71075 6.84361 6.90749 7.08942 7.21604 7.37019 7.70056 8.08235 8.27515 8.40631 8.75351 9.17500 9.64479 11.14391 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.009735 C = 0.008393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.588116 B = 2875.431257 C = 3335.297747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.161 4.161 3 C 0.183 3.817 4 H 0.039 0.961 5 C -0.500 4.500 6 H 0.099 0.901 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.878 3.122 10 H -0.281 1.281 11 H -0.269 1.269 12 H -0.298 1.298 13 N -0.504 5.504 14 C 0.048 3.952 15 C -0.112 4.112 16 C -0.109 4.109 17 C -0.133 4.133 18 C 0.136 3.864 19 C -0.179 4.179 20 O -0.537 6.537 21 C 0.060 3.940 22 H 0.084 0.916 23 H 0.026 0.974 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.038 0.962 27 H 0.262 0.738 28 H 0.027 0.973 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.356 0.644 40 H 0.114 0.886 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.905 -0.469 13.758 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.200 4.200 3 C 0.075 3.925 4 H 0.057 0.943 5 C -0.538 4.538 6 H 0.116 0.884 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.709 3.291 10 H -0.208 1.208 11 H -0.194 1.194 12 H -0.226 1.226 13 N -0.226 5.226 14 C -0.080 4.080 15 C -0.150 4.150 16 C -0.147 4.147 17 C -0.171 4.171 18 C 0.094 3.906 19 C -0.237 4.237 20 O -0.340 6.340 21 C -0.068 4.068 22 H 0.103 0.897 23 H 0.045 0.955 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.200 0.800 40 H 0.132 0.868 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.467 -0.527 13.202 13.293 hybrid contribution -0.010 -1.272 0.068 1.274 sum -1.477 -1.799 13.270 13.472 Atomic orbital electron populations 1.22108 0.96217 1.00306 1.02296 1.22557 0.97079 1.01275 0.99048 1.19925 0.96464 0.88426 0.87689 0.94311 1.21129 1.31054 1.13174 0.88455 0.88373 1.24877 0.95318 0.96407 0.96266 1.69891 1.44578 1.39985 0.99167 0.87012 0.81313 0.83958 0.76807 1.20830 1.19442 1.22598 1.61612 1.16117 1.43162 1.01703 1.21005 0.99983 0.94643 0.92351 1.20631 0.98086 0.99553 0.96721 1.21251 0.98224 0.97266 0.97939 1.21920 1.01813 0.97272 0.96108 1.21867 0.91125 0.89946 0.87649 1.22563 0.98186 1.01313 1.01610 1.86891 1.90386 1.16510 1.40190 1.22293 0.90027 0.91246 1.03280 0.89721 0.95475 0.93379 0.93558 0.94306 0.92825 0.95503 0.92281 0.92788 0.91510 0.92372 0.92735 0.93794 0.90520 0.92988 0.91882 0.92393 0.79979 0.86773 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.44 37.16 0.31 -2.81 16 2 C -0.16 -3.48 4.73 -26.73 -0.13 -3.61 16 3 C 0.18 4.31 2.00 -68.86 -0.14 4.17 16 4 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 5 C -0.50 -13.75 6.49 -34.44 -0.22 -13.97 16 6 H 0.10 2.99 6.35 -52.48 -0.33 2.66 16 7 C 0.07 2.08 5.41 -17.82 -0.10 1.98 16 8 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 9 Si 0.88 22.08 24.30 -169.99 -4.13 17.95 16 10 H -0.28 -6.93 6.93 56.52 0.39 -6.54 16 11 H -0.27 -6.54 6.53 56.52 0.37 -6.17 16 12 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 13 N -0.50 -10.33 4.33 -232.94 -1.01 -11.34 16 14 C 0.05 0.82 3.54 -6.70 -0.02 0.80 16 15 C -0.11 -1.60 5.53 -29.32 -0.16 -1.76 16 16 C -0.11 -1.45 5.56 -27.21 -0.15 -1.60 16 17 C -0.13 -1.95 4.43 -27.32 -0.12 -2.07 16 18 C 0.14 2.27 1.06 -89.39 -0.09 2.18 16 19 C -0.18 -2.48 8.47 37.16 0.31 -2.17 16 20 O -0.54 -10.20 12.70 -35.23 -0.45 -10.65 16 21 C 0.06 1.17 1.96 -4.67 -0.01 1.16 16 22 H 0.08 1.98 6.01 -51.93 -0.31 1.66 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.89 4.79 -51.93 -0.25 0.64 16 25 H 0.05 1.07 3.48 -51.93 -0.18 0.89 16 26 H 0.04 0.75 6.18 -51.93 -0.32 0.43 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.03 0.45 6.54 -51.93 -0.34 0.11 16 29 H 0.06 1.01 7.32 -51.93 -0.38 0.63 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.00 7.59 -51.93 -0.39 0.61 16 32 H 0.06 0.78 6.38 -51.93 -0.33 0.45 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.04 0.55 7.97 -51.93 -0.41 0.14 16 35 H 0.08 1.28 7.38 -51.93 -0.38 0.89 16 36 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.73 7.39 -51.93 -0.38 0.35 16 39 H 0.36 5.03 9.02 45.56 0.41 5.44 16 40 H 0.11 2.65 3.99 -51.93 -0.21 2.44 16 41 H 0.04 0.68 4.39 -51.93 -0.23 0.45 16 LS Contribution 284.41 15.07 4.29 4.29 Total: -1.00 -30.34 284.41 -6.75 -37.10 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.71 Total: 6.92 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -0.52 Total: -17.70 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: -0.24 Total: -37.91 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.45 Total: -10.65 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.13 Total: 17.95 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.34 -6.75 -37.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164361.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.032 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds