Wall clock time and date at job start Sun Mar 29 2020 23:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47074 * 2 1 4 4 H 1.08998 * 109.47202 * 186.70788 * 3 2 1 5 5 C 1.50699 * 109.46972 * 306.70994 * 3 2 1 6 6 H 1.08005 * 119.99679 * 120.00196 * 5 3 2 7 7 C 1.37872 * 120.00404 * 299.99863 * 5 3 2 8 8 N 1.31518 * 120.00691 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99552 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.46773 * 90.00291 * 9 7 5 11 11 H 1.48495 * 109.47231 * 330.00143 * 9 7 5 12 12 H 1.48503 * 109.47149 * 209.99961 * 9 7 5 13 13 N 1.46904 * 109.47099 * 66.70985 * 3 2 1 14 14 C 1.47803 * 110.99985 * 49.26892 * 13 3 2 15 15 C 1.45863 * 112.91529 * 153.86461 * 14 13 3 16 16 C 1.54510 * 111.58881 * 61.33357 * 15 14 13 17 17 C 1.50462 * 108.85002 * 282.80462 * 16 15 14 18 18 C 1.54292 * 113.03758 * 92.15671 * 17 16 15 19 19 C 1.52996 * 108.91808 * 79.02340 * 18 17 16 20 20 O 1.42897 * 108.92026 * 197.67232 * 18 17 16 21 21 C 1.44274 * 110.99875 * 287.29012 * 13 3 2 22 22 H 1.08998 * 109.47445 * 47.86154 * 1 2 3 23 23 H 1.09001 * 109.47127 * 167.86382 * 1 2 3 24 24 H 1.09003 * 109.46798 * 287.85800 * 1 2 3 25 25 H 1.09001 * 109.47035 * 240.00035 * 2 1 3 26 26 H 1.08995 * 109.47226 * 120.00063 * 2 1 3 27 27 H 0.96999 * 120.00177 * 179.97438 * 8 7 5 28 28 H 1.08993 * 108.79446 * 274.75263 * 14 13 3 29 29 H 1.09002 * 108.79218 * 33.09873 * 14 13 3 30 30 H 1.09003 * 109.05713 * 181.87244 * 15 14 13 31 31 H 1.09000 * 109.05788 * 300.78666 * 15 14 13 32 32 H 1.08996 * 109.57332 * 42.61324 * 16 15 14 33 33 H 1.08993 * 109.57506 * 162.99670 * 16 15 14 34 34 H 1.09004 * 108.76809 * 213.07133 * 17 16 15 35 35 H 1.09004 * 108.77583 * 331.23497 * 17 16 15 36 36 H 1.08994 * 109.47532 * 60.00541 * 19 18 17 37 37 H 1.09004 * 109.47377 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.47054 * 300.00028 * 19 18 17 39 39 H 0.96701 * 113.99905 * 299.99443 * 20 18 17 40 40 H 1.08999 * 108.97970 * 339.95494 * 21 13 3 41 41 H 1.08999 * 108.97802 * 98.66653 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1234 1.4449 -0.1200 5 6 1.4067 2.1992 -1.1390 6 1 0.8024 3.0714 -0.9380 7 6 1.5988 1.7780 -2.4377 8 7 1.0465 2.4387 -3.4319 9 14 2.6435 0.2690 -2.7853 10 1 1.7820 -0.9406 -2.7833 11 1 3.6859 0.1362 -1.7361 12 1 3.2931 0.4118 -4.1131 13 7 1.6869 2.0867 1.2722 14 6 2.0703 1.2381 2.4199 15 6 2.3181 2.0051 3.6356 16 6 1.0562 2.7715 4.0914 17 6 0.8854 3.9873 3.2217 18 6 -0.0145 3.7305 1.9949 19 6 -1.4786 3.7676 2.4372 20 8 0.2052 4.7655 1.0344 21 6 0.2734 2.3689 1.3340 22 1 -0.3634 0.6895 -0.7620 23 1 -0.3633 -1.0047 -0.2161 24 1 -0.3633 0.3152 0.9782 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.1820 2.1425 -4.3456 28 1 1.2692 0.5245 2.6121 29 1 2.9757 0.6881 2.1631 30 1 2.6270 1.3245 4.4291 31 1 3.1201 2.7191 3.4487 32 1 0.1826 2.1271 3.9940 33 1 1.1713 3.0792 5.1306 34 1 0.4452 4.7863 3.8184 35 1 1.8667 4.3115 2.8751 36 1 -1.7053 4.7455 2.8618 37 1 -2.1229 3.5866 1.5768 38 1 -1.6509 2.9965 3.1882 39 1 0.0050 5.6536 1.3604 40 1 -0.1318 2.3733 0.3221 41 1 -0.2198 1.5847 1.9083 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164361.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:56 Heat of formation + Delta-G solvation = -57.923603 kcal Electronic energy + Delta-G solvation = -19687.615966 eV Core-core repulsion = 16987.997385 eV Total energy + Delta-G solvation = -2699.618582 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07468 -38.22623 -36.29734 -34.16915 -32.78490 -32.33395 -29.56160 -28.57633 -27.01450 -24.73131 -24.11868 -22.22068 -20.68799 -20.21094 -18.44844 -17.66671 -17.23648 -16.71332 -16.16763 -15.67083 -15.18995 -14.95427 -14.78611 -14.52838 -14.15815 -14.03842 -13.59092 -13.33036 -13.03770 -12.97505 -12.68990 -12.60501 -12.52805 -12.20994 -12.04114 -11.86568 -11.56024 -11.54304 -11.26679 -11.11442 -10.97890 -10.79237 -10.65808 -10.45857 -8.77802 -8.19416 -6.17870 1.28768 1.34463 1.43085 2.35635 3.13365 3.27400 3.53549 3.89963 3.98382 4.21373 4.23357 4.30887 4.36819 4.43782 4.46333 4.55165 4.65245 4.70295 4.79128 4.89149 4.92009 4.98287 5.09610 5.12438 5.14485 5.19442 5.24790 5.34969 5.36017 5.44514 5.48091 5.52578 5.59282 5.68875 5.73981 6.20852 6.58768 6.84724 6.92383 7.21543 7.43771 8.96722 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.009735 C = 0.008393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.588116 B = 2875.431257 C = 3335.297747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.158 4.158 3 C 0.185 3.815 4 H 0.023 0.977 5 C -0.485 4.485 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.949 5.949 9 Si 0.937 3.063 10 H -0.270 1.270 11 H -0.254 1.254 12 H -0.303 1.303 13 N -0.518 5.518 14 C 0.047 3.953 15 C -0.112 4.112 16 C -0.106 4.106 17 C -0.125 4.125 18 C 0.128 3.872 19 C -0.171 4.171 20 O -0.575 6.575 21 C 0.066 3.934 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.034 0.966 26 H 0.070 0.930 27 H 0.261 0.739 28 H 0.038 0.962 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.374 0.626 40 H 0.068 0.932 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.718 -1.899 16.965 17.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.196 4.196 3 C 0.076 3.924 4 H 0.041 0.959 5 C -0.523 4.523 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.590 5.590 9 Si 0.766 3.234 10 H -0.196 1.196 11 H -0.178 1.178 12 H -0.231 1.231 13 N -0.241 5.241 14 C -0.080 4.080 15 C -0.149 4.149 16 C -0.144 4.144 17 C -0.163 4.163 18 C 0.087 3.913 19 C -0.229 4.229 20 O -0.381 6.381 21 C -0.063 4.063 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.221 0.779 40 H 0.086 0.914 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.282 -1.955 16.450 16.615 hybrid contribution -0.113 -0.726 -0.871 1.139 sum -1.395 -2.681 15.579 15.870 Atomic orbital electron populations 1.21985 0.95485 1.00487 1.02160 1.22478 0.97689 0.99589 0.99888 1.19696 0.95012 0.89541 0.88111 0.95920 1.21251 1.29396 1.11730 0.89965 0.92640 1.25615 0.96843 0.99478 0.96147 1.70046 1.47079 1.42335 0.99576 0.86043 0.80115 0.80717 0.76566 1.19614 1.17802 1.23124 1.61601 1.16931 1.44009 1.01525 1.21138 1.00088 0.94840 0.91956 1.20627 0.98400 0.99770 0.96142 1.21273 0.97722 0.96324 0.99045 1.21829 0.99974 0.99029 0.95456 1.21992 0.93554 0.87916 0.87835 1.22475 0.95549 1.03430 1.01423 1.86842 1.90869 1.18233 1.42181 1.22180 0.89217 0.93694 1.01209 0.93520 0.93454 0.91500 0.94765 0.91183 0.92992 0.94432 0.92464 0.89745 0.92656 0.91937 0.89853 0.91203 0.93043 0.90582 0.93655 0.90478 0.77920 0.91351 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.75 8.44 71.98 0.61 -5.14 16 2 C -0.16 -6.56 4.73 30.60 0.14 -6.42 16 3 C 0.18 8.74 2.00 44.17 0.09 8.83 16 4 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16 5 C -0.49 -27.78 6.49 25.60 0.17 -27.61 16 6 H 0.06 3.62 6.35 -2.91 -0.02 3.60 16 7 C 0.02 0.92 5.41 84.65 0.46 1.38 16 8 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 9 Si 0.94 46.25 24.30 68.60 1.67 47.91 16 10 H -0.27 -12.72 6.93 99.48 0.69 -12.03 16 11 H -0.25 -11.75 6.53 99.48 0.65 -11.10 16 12 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 13 N -0.52 -20.95 4.33 -890.87 -3.86 -24.81 16 14 C 0.05 1.47 3.54 83.94 0.30 1.77 16 15 C -0.11 -2.79 5.53 28.92 0.16 -2.63 16 16 C -0.11 -2.38 5.56 30.29 0.17 -2.21 16 17 C -0.12 -3.34 4.43 30.21 0.13 -3.20 16 18 C 0.13 4.17 1.06 -10.00 -0.01 4.15 16 19 C -0.17 -4.40 8.47 71.98 0.61 -3.79 16 20 O -0.58 -22.43 12.70 -148.98 -1.89 -24.32 16 21 C 0.07 2.53 1.96 87.16 0.17 2.70 16 22 H 0.05 2.22 6.01 -2.39 -0.01 2.20 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.07 2.36 4.79 -2.39 -0.01 2.35 16 25 H 0.03 1.51 3.48 -2.39 -0.01 1.50 16 26 H 0.07 2.48 6.18 -2.39 -0.01 2.47 16 27 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 28 H 0.04 1.10 6.54 -2.39 -0.02 1.08 16 29 H 0.06 1.80 7.32 -2.39 -0.02 1.78 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.52 7.59 -2.39 -0.02 1.50 16 32 H 0.06 1.38 6.38 -2.39 -0.02 1.36 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.50 7.97 -2.38 -0.02 1.48 16 35 H 0.05 1.64 7.38 -2.38 -0.02 1.62 16 36 H 0.08 1.58 8.12 -2.39 -0.02 1.56 16 37 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.08 1.68 7.39 -2.39 -0.02 1.66 16 39 H 0.37 10.67 9.02 -74.06 -0.67 10.00 16 40 H 0.07 3.30 3.99 -2.39 -0.01 3.29 16 41 H 0.05 1.82 4.39 -2.39 -0.01 1.81 16 Total: -1.00 -69.25 284.41 -0.51 -69.76 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.29 Total: 23.89 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 2.99 Total: -32.17 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -3.56 Total: -85.08 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -1.89 Total: -24.32 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.67 Total: 47.91 kcal Total: -69.25 -0.51 -69.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164361.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.835 kcal (2) G-P(sol) polarization free energy of solvation -69.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds