Wall clock time and date at job start Sun Mar 29 2020 23:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 H 1.09011 * 109.47188 * 56.41920 * 3 2 1 5 5 C 1.50697 * 109.47349 * 176.41309 * 3 2 1 6 6 H 1.08005 * 120.00072 * 115.36159 * 5 3 2 7 7 C 1.37876 * 120.00351 * 295.36547 * 5 3 2 8 8 N 1.31511 * 119.99700 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00131 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47156 * 59.99922 * 9 7 5 11 11 H 1.48504 * 109.47141 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47094 * 299.99792 * 9 7 5 13 13 N 1.46902 * 109.47400 * 296.41865 * 3 2 1 14 14 C 1.48003 * 110.99792 * 211.39905 * 13 3 2 15 15 C 1.50446 * 112.81622 * 191.34575 * 14 13 3 16 16 C 1.54307 * 108.49428 * 93.73556 * 15 14 13 17 17 C 1.45879 * 112.19007 * 281.44699 * 16 15 14 18 18 C 1.54317 * 112.18143 * 61.11818 * 17 16 15 19 19 C 1.52998 * 109.62926 * 161.57732 * 18 17 16 20 20 O 1.42902 * 109.62666 * 41.18397 * 18 17 16 21 21 C 1.48195 * 110.82998 * 82.62603 * 13 3 2 22 22 H 1.08999 * 109.46751 * 67.58067 * 1 2 3 23 23 H 1.09002 * 109.46796 * 187.58306 * 1 2 3 24 24 H 1.08996 * 109.47251 * 307.58216 * 1 2 3 25 25 H 1.09001 * 109.47518 * 240.00226 * 2 1 3 26 26 H 1.09003 * 109.46854 * 119.99992 * 2 1 3 27 27 H 0.97004 * 119.99950 * 180.02562 * 8 7 5 28 28 H 1.08991 * 108.81409 * 70.48383 * 14 13 3 29 29 H 1.09002 * 108.72509 * 312.14457 * 14 13 3 30 30 H 1.08996 * 109.63253 * 334.02888 * 15 14 13 31 31 H 1.09006 * 109.62809 * 213.43719 * 15 14 13 32 32 H 1.08998 * 108.93436 * 160.75267 * 16 15 14 33 33 H 1.08990 * 108.93825 * 42.14669 * 16 15 14 34 34 H 1.09005 * 108.93963 * 300.42550 * 17 16 15 35 35 H 1.08998 * 108.86716 * 181.77147 * 17 16 15 36 36 H 1.09002 * 109.47368 * 299.60229 * 19 18 17 37 37 H 1.09000 * 109.47283 * 59.61209 * 19 18 17 38 38 H 1.09000 * 109.46870 * 179.60472 * 19 18 17 39 39 H 0.96696 * 114.00140 * 55.49925 * 20 18 17 40 40 H 1.09000 * 109.13333 * 324.09936 * 21 13 3 41 41 H 1.09005 * 108.60904 * 205.76638 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6251 1.9746 0.8562 5 6 3.5443 1.4435 0.0889 6 1 4.1335 1.8268 -0.7312 7 6 4.1686 0.9551 1.2170 8 7 3.4513 0.4888 2.2157 9 14 6.0334 0.9557 1.3268 10 1 6.5355 2.3486 1.2136 11 1 6.4527 0.3834 2.6315 12 1 6.5946 0.1360 0.2230 13 7 1.6222 2.1096 -1.2403 14 6 2.6148 3.1256 -1.6563 15 6 2.1099 4.0180 -2.7572 16 6 1.4967 5.2825 -2.1198 17 6 0.1579 5.0404 -1.5935 18 6 0.1533 3.9676 -0.4842 19 6 -1.1370 4.0767 0.3308 20 8 1.2804 4.1588 0.3732 21 6 0.2318 2.6097 -1.1272 22 1 -0.3633 0.3919 -0.9500 23 1 -0.3633 -1.0187 0.1356 24 1 -0.3633 0.6267 0.8144 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8905 0.1455 3.0096 28 1 3.5150 2.6170 -2.0011 29 1 2.8682 3.7412 -0.7932 30 1 1.3488 3.4929 -3.3343 31 1 2.9373 4.3004 -3.4082 32 1 1.4438 6.0683 -2.8734 33 1 2.1412 5.6170 -1.3070 34 1 -0.4879 4.7105 -2.4073 35 1 -0.2346 5.9722 -1.1863 36 1 -1.1946 5.0637 0.7898 37 1 -1.9948 3.9304 -0.3255 38 1 -1.1407 3.3134 1.1090 39 1 1.3363 5.0442 0.7578 40 1 -0.3538 1.9063 -0.5354 41 1 -0.1991 2.6687 -2.1267 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164362.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:59 Heat of formation + Delta-G solvation = -36.917064 kcal Electronic energy + Delta-G solvation = -19718.174875 eV Core-core repulsion = 17019.467205 eV Total energy + Delta-G solvation = -2698.707670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.61812 -35.76371 -34.34258 -32.20956 -31.87736 -30.70736 -27.56810 -27.31640 -24.15678 -23.56082 -22.33411 -19.92916 -19.40350 -18.87799 -16.20838 -16.06959 -15.56838 -15.03212 -14.58199 -13.86987 -13.67775 -13.22453 -12.82525 -12.63229 -12.46418 -12.06042 -11.85299 -11.76643 -11.67162 -11.34715 -11.13892 -10.79742 -10.68871 -10.59905 -10.56575 -10.37371 -10.08413 -10.06199 -9.61007 -9.51104 -9.18077 -8.84821 -8.42173 -8.24638 -6.67440 -5.85038 -3.85564 3.40021 3.44034 3.46969 4.53677 4.64565 4.98109 5.02675 5.27221 5.38627 5.47463 5.48451 5.71033 5.73832 5.91596 5.99873 6.04522 6.18772 6.24766 6.30450 6.35671 6.41370 6.45853 6.52431 6.58934 6.61229 6.64615 6.75599 7.07609 7.09521 7.35290 7.42060 7.59358 7.81557 7.98586 8.13986 8.26865 8.35932 8.57478 8.91557 9.23365 9.77603 11.23130 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024303 B = 0.009712 C = 0.008360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.865697 B = 2882.246445 C = 3348.527787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C 0.224 3.776 4 H 0.026 0.974 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.887 3.113 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.534 5.534 14 C 0.072 3.928 15 C -0.122 4.122 16 C -0.114 4.114 17 C -0.139 4.139 18 C 0.102 3.898 19 C -0.172 4.172 20 O -0.522 6.522 21 C 0.051 3.949 22 H 0.049 0.951 23 H 0.027 0.973 24 H 0.039 0.961 25 H 0.036 0.964 26 H 0.081 0.919 27 H 0.257 0.743 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.354 0.646 40 H 0.089 0.911 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 7.941 -5.689 12.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C 0.118 3.882 4 H 0.044 0.956 5 C -0.545 4.545 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.258 5.258 14 C -0.055 4.055 15 C -0.160 4.160 16 C -0.152 4.152 17 C -0.177 4.177 18 C 0.059 3.941 19 C -0.230 4.230 20 O -0.325 6.325 21 C -0.078 4.078 22 H 0.068 0.932 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.200 0.800 40 H 0.107 0.893 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.213 6.896 -6.028 11.659 hybrid contribution 0.785 1.247 0.898 1.726 sum -6.428 8.143 -5.130 11.574 Atomic orbital electron populations 1.22086 1.00111 0.98719 0.99780 1.21566 0.91190 1.00492 1.01347 1.19203 0.94141 0.89517 0.85342 0.95606 1.21477 0.91569 1.39879 1.01573 0.91854 1.24906 0.97522 0.95750 0.95883 1.69925 1.34633 1.42387 1.06301 0.86744 0.86657 0.78081 0.76935 1.20563 1.21596 1.20487 1.61972 0.98866 1.28518 1.36468 1.21722 0.94832 0.92706 0.96271 1.21536 0.99976 0.95735 0.98717 1.20483 0.96773 0.98077 0.99852 1.21234 0.98354 0.98926 0.99151 1.21791 0.85826 0.97400 0.89058 1.22491 0.98057 1.01745 1.00673 1.87046 1.45513 1.35199 1.64708 1.22533 0.94412 0.92242 0.98587 0.93195 0.95369 0.94171 0.94491 0.90088 0.93335 0.92048 0.91957 0.92064 0.92587 0.93482 0.91854 0.91948 0.93079 0.93187 0.92277 0.91721 0.80039 0.89337 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.25 37.16 0.31 -2.75 16 2 C -0.11 -2.64 5.48 -26.73 -0.15 -2.78 16 3 C 0.22 5.66 1.37 -68.87 -0.09 5.57 16 4 H 0.03 0.74 6.52 -51.92 -0.34 0.40 16 5 C -0.51 -14.00 7.58 -34.44 -0.26 -14.26 16 6 H 0.06 1.74 5.22 -52.48 -0.27 1.47 16 7 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 8 N -0.89 -26.04 11.66 55.43 0.65 -25.40 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.53 -11.53 4.49 -229.13 -1.03 -12.56 16 14 C 0.07 1.47 3.74 -4.49 -0.02 1.45 16 15 C -0.12 -1.98 5.63 -27.32 -0.15 -2.13 16 16 C -0.11 -1.62 5.20 -29.42 -0.15 -1.77 16 17 C -0.14 -1.87 4.53 -29.41 -0.13 -2.00 16 18 C 0.10 1.61 0.99 -91.21 -0.09 1.52 16 19 C -0.17 -2.36 8.54 37.16 0.32 -2.05 16 20 O -0.52 -9.59 7.12 -35.23 -0.25 -9.84 16 21 C 0.05 0.93 3.69 -4.38 -0.02 0.91 16 22 H 0.05 0.94 5.99 -51.93 -0.31 0.63 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.04 0.82 7.57 -51.93 -0.39 0.42 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.08 2.22 6.37 -51.93 -0.33 1.89 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.06 1.37 6.26 -51.93 -0.33 1.05 16 29 H 0.06 1.39 4.85 -51.93 -0.25 1.14 16 30 H 0.06 1.00 7.09 -51.93 -0.37 0.63 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.94 6.73 -51.93 -0.35 0.59 16 34 H 0.06 0.81 7.53 -51.93 -0.39 0.42 16 35 H 0.05 0.61 8.00 -51.93 -0.42 0.19 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 39 H 0.35 5.19 8.90 45.56 0.41 5.60 16 40 H 0.09 1.66 3.38 -51.93 -0.18 1.48 16 41 H 0.06 0.96 6.61 -51.93 -0.34 0.62 16 LS Contribution 290.73 15.07 4.38 4.38 Total: -1.00 -29.49 290.73 -7.76 -37.25 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.95 Total: 6.05 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -0.54 Total: -16.70 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.38 Total: -37.96 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.25 Total: -9.84 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.49 -7.76 -37.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164362.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.337 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds