Wall clock time and date at job start Sun Mar 29 2020 23:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47017 * 2 1 4 4 H 1.08999 * 109.47355 * 184.67682 * 3 2 1 5 5 C 1.50697 * 109.47088 * 64.67407 * 3 2 1 6 6 H 1.08008 * 119.99986 * 245.76210 * 5 3 2 7 7 C 1.37873 * 120.00309 * 65.76203 * 5 3 2 8 8 N 1.31516 * 119.99952 * 5.44255 * 7 5 3 9 9 Si 1.86798 * 120.00204 * 185.44236 * 7 5 3 10 10 H 1.48498 * 109.47366 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47145 * 59.99915 * 9 7 5 12 12 H 1.48505 * 109.47227 * 299.99876 * 9 7 5 13 13 N 1.46902 * 109.46700 * 304.67446 * 3 2 1 14 14 C 1.47628 * 111.00133 * 303.58643 * 13 3 2 15 15 C 1.50820 * 108.05252 * 150.35304 * 14 13 3 16 16 C 1.53817 * 111.62397 * 95.06212 * 15 14 13 17 17 C 1.54176 * 111.96614 * 319.03771 * 16 15 14 18 18 C 1.50748 * 112.61048 * 318.49236 * 17 16 15 19 19 C 1.53000 * 109.54291 * 212.87937 * 18 17 16 20 20 O 1.42895 * 109.62132 * 333.10775 * 18 17 16 21 21 C 1.39782 * 110.99742 * 174.70043 * 13 3 2 22 22 H 1.08998 * 109.46942 * 304.99181 * 1 2 3 23 23 H 1.09002 * 109.47229 * 64.99480 * 1 2 3 24 24 H 1.09000 * 109.46926 * 184.99574 * 1 2 3 25 25 H 1.09000 * 109.47227 * 239.99569 * 2 1 3 26 26 H 1.08999 * 109.47188 * 119.99689 * 2 1 3 27 27 H 0.97003 * 119.99625 * 355.12397 * 8 7 5 28 28 H 1.09002 * 109.74748 * 269.98885 * 14 13 3 29 29 H 1.08997 * 109.74526 * 30.71440 * 14 13 3 30 30 H 1.08998 * 109.05115 * 334.50098 * 15 14 13 31 31 H 1.09004 * 109.04733 * 215.61163 * 15 14 13 32 32 H 1.09008 * 108.97713 * 198.40137 * 16 15 14 33 33 H 1.08997 * 108.98770 * 79.68471 * 16 15 14 34 34 H 1.09003 * 108.85362 * 197.68349 * 17 16 15 35 35 H 1.08998 * 108.85292 * 79.30557 * 17 16 15 36 36 H 1.09002 * 109.47409 * 300.45374 * 19 18 17 37 37 H 1.09000 * 109.47424 * 60.45774 * 19 18 17 38 38 H 1.09004 * 109.46986 * 180.45675 * 19 18 17 39 39 H 0.96701 * 114.00111 * 299.58710 * 20 18 17 40 40 H 1.09005 * 109.01919 * 309.71598 * 21 13 3 41 41 H 1.09003 * 109.02075 * 68.60962 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1268 1.4437 -0.0838 5 6 1.6345 2.1187 1.2842 6 1 0.9345 2.9411 1.2639 7 6 2.1568 1.6876 2.4852 8 7 3.0883 0.7594 2.5017 9 14 1.5414 2.4220 4.0887 10 1 2.2576 1.7938 5.2279 11 1 0.0838 2.1711 4.2209 12 1 1.7942 3.8853 4.0923 13 7 1.4603 2.1667 -1.1391 14 6 1.7658 1.4833 -2.4114 15 6 0.6412 1.7662 -3.3757 16 6 0.9622 2.9644 -4.2852 17 6 1.6476 4.1084 -3.5115 18 6 1.0326 4.3405 -2.1549 19 6 1.1120 5.8277 -1.8046 20 8 -0.3346 3.9253 -2.1705 21 6 1.8098 3.5197 -1.1027 22 1 -0.3633 0.5893 0.8419 23 1 -0.3634 0.4344 -0.9313 24 1 -0.3633 -1.0238 0.0895 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.3576 0.3277 1.6758 28 1 2.7034 1.8631 -2.8176 29 1 1.8450 0.4094 -2.2428 30 1 -0.2660 1.9810 -2.8110 31 1 0.4731 0.8848 -3.9946 32 1 0.0351 3.3369 -4.7212 33 1 1.6218 2.6339 -5.0875 34 1 1.5688 5.0253 -4.0956 35 1 2.7022 3.8644 -3.3832 36 1 2.1552 6.1438 -1.7962 37 1 0.5631 6.4059 -2.5479 38 1 0.6744 5.9930 -0.8201 39 1 -0.8827 4.4005 -2.8100 40 1 1.5921 3.9163 -0.1110 41 1 2.8781 3.6160 -1.2968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164364.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:01 Heat of formation + Delta-G solvation = -48.509927 kcal Electronic energy + Delta-G solvation = -19533.533087 eV Core-core repulsion = 16834.322713 eV Total energy + Delta-G solvation = -2699.210374 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.62795 -36.61597 -34.08606 -32.50102 -31.92390 -30.68581 -27.77412 -26.04925 -25.03896 -23.56157 -22.76603 -20.15386 -19.49016 -18.75444 -16.82764 -15.98253 -15.64359 -14.97279 -14.56554 -13.98197 -13.75755 -13.61371 -13.22988 -12.78866 -12.60361 -12.22689 -12.03427 -11.82127 -11.57307 -11.18628 -11.01330 -10.84462 -10.75348 -10.65590 -10.49243 -10.42526 -10.07564 -10.02968 -9.88116 -9.56755 -9.38462 -9.18262 -8.33398 -8.29086 -6.92444 -6.25460 -3.96890 3.47150 3.50323 3.67890 4.55099 4.61551 4.93148 5.01841 5.15214 5.22649 5.43766 5.46582 5.55008 5.69705 5.82579 5.89820 6.01367 6.06266 6.17744 6.22041 6.26628 6.33448 6.40043 6.43113 6.46121 6.57719 6.61616 6.71929 6.84994 7.03156 7.10406 7.21128 7.31724 7.50544 7.62182 8.08249 8.13408 8.28615 8.69638 8.71855 8.97030 9.73141 11.09783 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026613 B = 0.008971 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.847264 B = 3120.514606 C = 3685.507539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.115 4.115 3 C 0.208 3.792 4 H -0.015 1.015 5 C -0.576 4.576 6 H 0.058 0.942 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 1.066 2.934 10 H -0.285 1.285 11 H -0.288 1.288 12 H -0.290 1.290 13 N -0.525 5.525 14 C 0.058 3.942 15 C -0.119 4.119 16 C -0.101 4.101 17 C -0.148 4.148 18 C 0.131 3.869 19 C -0.173 4.173 20 O -0.526 6.526 21 C 0.102 3.898 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.016 0.984 25 H 0.022 0.978 26 H 0.063 0.937 27 H 0.270 0.730 28 H 0.018 0.982 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.353 0.647 40 H 0.094 0.906 41 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.074 5.804 -11.356 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.153 4.153 3 C 0.103 3.897 4 H 0.002 0.998 5 C -0.615 4.615 6 H 0.076 0.924 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.895 3.105 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.217 1.217 13 N -0.249 5.249 14 C -0.069 4.069 15 C -0.157 4.157 16 C -0.139 4.139 17 C -0.185 4.185 18 C 0.089 3.911 19 C -0.231 4.231 20 O -0.329 6.329 21 C -0.028 4.028 22 H 0.080 0.920 23 H 0.068 0.932 24 H 0.035 0.965 25 H 0.041 0.959 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.036 0.964 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.197 0.803 40 H 0.112 0.888 41 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -4.072 5.372 -9.188 11.395 hybrid contribution 0.614 0.513 -2.337 2.470 sum -3.458 5.885 -11.525 13.394 Atomic orbital electron populations 1.21427 0.96163 0.97731 1.02323 1.21689 0.96549 0.98349 0.98739 1.19337 0.91171 0.90591 0.88642 0.99760 1.21889 1.29372 1.18897 0.91306 0.92410 1.25692 0.94270 0.96500 1.02080 1.70797 1.27147 1.25666 1.31742 0.83586 0.75866 0.75471 0.75621 1.21025 1.21417 1.21681 1.58565 1.63085 1.01178 1.02029 1.21834 0.95369 0.99134 0.90601 1.21538 1.01932 0.95390 0.96797 1.21686 0.99149 0.95671 0.97404 1.22186 1.01054 0.98307 0.96992 1.21218 0.83037 0.92583 0.94245 1.22470 1.02088 0.96221 1.02274 1.86848 1.19233 1.63719 1.63109 1.20829 0.93286 0.89646 0.99045 0.92045 0.93163 0.96482 0.95928 0.91817 0.91862 0.96360 0.91097 0.88123 0.93952 0.93007 0.93487 0.92873 0.91948 0.92109 0.92994 0.91537 0.80276 0.88787 0.97498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.49 37.16 0.35 -2.28 16 2 C -0.11 -2.72 4.89 -26.73 -0.13 -2.85 16 3 C 0.21 5.21 1.44 -68.86 -0.10 5.11 16 4 H -0.02 -0.42 7.65 -51.93 -0.40 -0.81 16 5 C -0.58 -15.71 6.44 -34.44 -0.22 -15.93 16 6 H 0.06 1.62 6.56 -52.48 -0.34 1.27 16 7 C 0.02 0.51 5.23 -17.82 -0.09 0.42 16 8 N -0.92 -27.24 13.09 55.43 0.73 -26.52 16 9 Si 1.07 25.27 29.91 -169.99 -5.08 20.19 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.53 -11.24 2.71 -233.38 -0.63 -11.87 16 14 C 0.06 1.09 4.80 -4.52 -0.02 1.06 16 15 C -0.12 -1.89 5.36 -27.40 -0.15 -2.04 16 16 C -0.10 -1.36 5.40 -25.69 -0.14 -1.50 16 17 C -0.15 -2.05 4.79 -27.24 -0.13 -2.18 16 18 C 0.13 2.06 0.98 -91.00 -0.09 1.97 16 19 C -0.17 -2.34 8.52 37.16 0.32 -2.02 16 20 O -0.53 -8.44 9.33 -35.23 -0.33 -8.77 16 21 C 0.10 2.08 3.96 -6.74 -0.03 2.05 16 22 H 0.06 1.49 7.22 -51.93 -0.37 1.11 16 23 H 0.05 1.07 7.34 -51.93 -0.38 0.69 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.02 0.49 6.09 -51.93 -0.32 0.17 16 26 H 0.06 1.66 6.12 -51.93 -0.32 1.34 16 27 H 0.27 8.00 5.77 -40.82 -0.24 7.77 16 28 H 0.02 0.34 6.66 -51.93 -0.35 -0.01 16 29 H 0.07 1.37 5.34 -51.93 -0.28 1.09 16 30 H 0.10 1.79 5.88 -51.93 -0.31 1.48 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.61 8.06 -51.92 -0.42 0.19 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.63 7.69 -51.93 -0.40 0.23 16 35 H 0.06 0.94 6.57 -51.93 -0.34 0.60 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.58 8.10 -51.93 -0.42 0.16 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.35 4.17 8.91 45.56 0.41 4.57 16 40 H 0.09 2.16 5.60 -51.93 -0.29 1.87 16 41 H 0.01 0.15 7.54 -51.93 -0.39 -0.24 16 LS Contribution 295.48 15.07 4.45 4.45 Total: -1.00 -29.49 295.48 -7.36 -36.85 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.06 Total: 3.86 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -0.43 Total: -18.19 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.09 Total: -38.39 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.33 Total: -8.77 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.08 Total: 20.19 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.49 -7.36 -36.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164364.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.664 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds