Wall clock time and date at job start Sun Mar 29 2020 23:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46725 * 2 1 4 4 H 1.08997 * 109.46812 * 182.60244 * 3 2 1 5 5 C 1.50695 * 109.47050 * 62.60600 * 3 2 1 6 6 H 1.07996 * 120.00218 * 243.86603 * 5 3 2 7 7 C 1.37882 * 120.00358 * 63.86544 * 5 3 2 8 8 N 1.31518 * 120.00442 * 195.14622 * 7 5 3 9 9 Si 1.86803 * 119.99699 * 15.14370 * 7 5 3 10 10 H 1.48494 * 109.47411 * 92.20386 * 9 7 5 11 11 H 1.48502 * 109.46994 * 212.20494 * 9 7 5 12 12 H 1.48508 * 109.46921 * 332.19987 * 9 7 5 13 13 N 1.46901 * 109.47154 * 302.60545 * 3 2 1 14 14 C 1.46841 * 111.00103 * 305.49407 * 13 3 2 15 15 C 1.53038 * 109.57853 * 174.19669 * 14 13 3 16 16 C 1.53119 * 109.27530 * 59.08346 * 15 14 13 17 17 H 1.08997 * 109.52589 * 62.38165 * 16 15 14 18 18 C 1.53003 * 109.52322 * 182.51020 * 16 15 14 19 19 C 1.53121 * 109.21238 * 302.44359 * 16 15 14 20 20 C 1.52999 * 109.50330 * 177.56198 * 19 16 15 21 21 O 1.42897 * 109.50428 * 297.64178 * 19 16 15 22 22 C 1.46851 * 110.99664 * 181.28917 * 13 3 2 23 23 H 1.09004 * 109.47176 * 174.96871 * 1 2 3 24 24 H 1.09001 * 109.47483 * 294.95891 * 1 2 3 25 25 H 1.08999 * 109.47796 * 54.96694 * 1 2 3 26 26 H 1.09001 * 109.46977 * 240.00746 * 2 1 3 27 27 H 1.08994 * 109.47216 * 120.00249 * 2 1 3 28 28 H 0.96999 * 119.99682 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.46417 * 294.18111 * 14 13 3 30 30 H 1.08999 * 109.46421 * 54.14466 * 14 13 3 31 31 H 1.09005 * 109.45317 * 299.17761 * 15 14 13 32 32 H 1.08995 * 109.56249 * 179.05575 * 15 14 13 33 33 H 1.09003 * 109.47156 * 179.87633 * 18 16 15 34 34 H 1.09000 * 109.46747 * 299.86699 * 18 16 15 35 35 H 1.08996 * 109.47082 * 59.87438 * 18 16 15 36 36 H 1.08999 * 109.47124 * 60.00009 * 20 19 16 37 37 H 1.09002 * 109.47353 * 180.02562 * 20 19 16 38 38 H 1.08999 * 109.47333 * 300.00166 * 20 19 16 39 39 H 0.96708 * 114.00413 * 180.02562 * 21 19 16 40 40 H 1.09000 * 109.46500 * 65.81977 * 22 13 3 41 41 H 1.09008 * 109.45218 * 305.84964 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1289 1.4429 -0.0467 5 6 1.5910 2.1340 1.2615 6 1 0.9162 2.9754 1.2053 7 6 2.0416 1.6925 2.4875 8 7 1.4386 2.0826 3.5892 9 14 3.5087 0.5402 2.5836 10 1 4.7528 1.3349 2.7433 11 1 3.3490 -0.3685 3.7473 12 1 3.5904 -0.2622 1.3366 13 7 1.4995 2.1530 -1.1667 14 6 1.8074 1.4342 -2.4096 15 6 1.1096 2.1212 -3.5857 16 6 1.5884 3.5725 -3.6798 17 1 2.6602 3.5905 -3.8769 18 6 0.8479 4.2827 -4.8148 19 6 1.2996 4.2853 -2.3557 20 6 1.8302 5.7188 -2.4209 21 8 -0.1103 4.3085 -2.1240 22 6 1.9932 3.5351 -1.2164 23 1 -0.3634 -1.0237 -0.0901 24 1 -0.3634 0.4336 0.9317 25 1 -0.3635 0.5899 -0.8414 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 1.7555 1.7717 4.4517 29 1 2.8849 1.4393 -2.5747 30 1 1.4573 0.4051 -2.3304 31 1 0.0311 2.1033 -3.4285 32 1 1.3519 1.5974 -4.5103 33 1 1.1878 5.3163 -4.8796 34 1 1.0523 3.7734 -5.7566 35 1 -0.2238 4.2643 -4.6168 36 1 1.3385 6.2516 -3.2348 37 1 1.6248 6.2256 -1.4780 38 1 2.9059 5.7005 -2.5963 39 1 -0.3665 4.7464 -1.3007 40 1 3.0697 3.5303 -1.3870 41 1 1.7776 4.0318 -0.2703 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:20 Heat of formation + Delta-G solvation = -74.228626 kcal Electronic energy + Delta-G solvation = -19310.767699 eV Core-core repulsion = 16610.442078 eV Total energy + Delta-G solvation = -2700.325620 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.85030 -38.02392 -35.54302 -34.25478 -33.08684 -32.14251 -29.68732 -27.92209 -27.21675 -24.76525 -23.23928 -23.01358 -20.78040 -20.45166 -18.48286 -17.44025 -17.04411 -16.29248 -15.92226 -15.58222 -15.27307 -14.85387 -14.66575 -14.58142 -14.37974 -14.07316 -13.46531 -13.27703 -12.98211 -12.91938 -12.82295 -12.62495 -12.44523 -12.34681 -12.25690 -12.05166 -11.82507 -11.56428 -11.40831 -11.18481 -11.11269 -10.76888 -10.52800 -10.40730 -8.82376 -8.25884 -6.20825 1.30125 1.35224 1.43076 2.35600 3.05873 3.18654 3.58473 3.83639 3.89157 4.07279 4.18859 4.37330 4.48409 4.51714 4.58495 4.61325 4.65611 4.74105 4.77236 4.87035 4.91833 4.99320 5.02546 5.06040 5.11368 5.16271 5.20771 5.27215 5.33939 5.39474 5.45477 5.50063 5.66531 5.74318 5.82236 6.12826 6.48184 6.79535 6.82430 7.02090 7.41233 8.90445 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030470 B = 0.008211 C = 0.007518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.722528 B = 3409.326208 C = 3723.372402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.118 4.118 3 C 0.192 3.808 4 H -0.022 1.022 5 C -0.489 4.489 6 H 0.040 0.960 7 C 0.021 3.979 8 N -0.940 5.940 9 Si 0.915 3.085 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.232 1.232 13 N -0.517 5.517 14 C 0.045 3.955 15 C -0.099 4.099 16 C -0.078 4.078 17 H 0.079 0.921 18 C -0.133 4.133 19 C 0.142 3.858 20 C -0.172 4.172 21 O -0.556 6.556 22 C 0.042 3.958 23 H 0.048 0.952 24 H 0.028 0.972 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.262 0.738 29 H 0.019 0.981 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.377 0.623 40 H 0.020 0.980 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.894 1.948 -15.758 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.156 4.156 3 C 0.084 3.916 4 H -0.004 1.004 5 C -0.527 4.527 6 H 0.058 0.942 7 C -0.176 4.176 8 N -0.581 5.581 9 Si 0.740 3.260 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.156 1.156 13 N -0.241 5.241 14 C -0.083 4.083 15 C -0.136 4.136 16 C -0.096 4.096 17 H 0.098 0.902 18 C -0.190 4.190 19 C 0.101 3.899 20 C -0.230 4.230 21 O -0.362 6.362 22 C -0.087 4.087 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.225 0.775 40 H 0.038 0.962 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.376 1.619 -16.099 16.239 hybrid contribution 1.582 -0.078 1.618 2.264 sum 2.958 1.541 -14.481 14.860 Atomic orbital electron populations 1.21343 0.95055 0.99384 1.01340 1.21912 0.97626 0.96659 0.99356 1.19479 0.90970 0.91919 0.89221 1.00436 1.20951 1.26993 1.15102 0.89685 0.94198 1.25575 0.98888 0.97794 0.95370 1.70096 1.41097 1.48312 0.98563 0.86384 0.80616 0.80006 0.79007 1.20851 1.21350 1.15563 1.61687 1.59448 1.01323 1.01635 1.22262 0.97018 0.98678 0.90307 1.21525 1.00612 0.94791 0.96718 1.21182 1.00077 0.95066 0.93322 0.90247 1.21703 1.00313 1.00197 0.96834 1.21209 0.81232 0.93791 0.93703 1.22446 1.02050 0.95734 1.02795 1.86426 1.21989 1.82476 1.45300 1.22650 0.95908 0.90889 0.99235 0.93331 0.95277 0.92262 0.92484 0.94058 0.92855 0.96255 0.90595 0.92097 0.89969 0.91901 0.91685 0.93115 0.90261 0.92624 0.91277 0.77530 0.96176 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.71 9.35 71.98 0.67 -4.04 16 2 C -0.12 -5.00 4.44 30.60 0.14 -4.87 16 3 C 0.19 8.91 1.31 44.17 0.06 8.97 16 4 H -0.02 -1.04 6.86 -2.39 -0.02 -1.06 16 5 C -0.49 -27.10 7.16 25.60 0.18 -26.92 16 6 H 0.04 2.47 7.20 -2.91 -0.02 2.45 16 7 C 0.02 1.22 5.34 84.66 0.45 1.68 16 8 N -0.94 -58.01 13.96 21.45 0.30 -57.71 16 9 Si 0.91 43.67 25.80 68.60 1.77 45.44 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.23 -10.18 5.39 99.48 0.54 -9.64 16 13 N -0.52 -20.73 3.49 -875.51 -3.05 -23.79 16 14 C 0.05 1.49 4.84 86.33 0.42 1.91 16 15 C -0.10 -2.72 5.23 30.65 0.16 -2.56 16 16 C -0.08 -1.99 2.12 -10.71 -0.02 -2.01 16 17 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 18 C -0.13 -2.83 8.74 71.98 0.63 -2.20 16 19 C 0.14 4.17 0.68 -10.74 -0.01 4.16 16 20 C -0.17 -4.14 8.53 71.98 0.61 -3.53 16 21 O -0.56 -17.76 11.55 -148.98 -1.72 -19.48 16 22 C 0.04 1.57 4.21 86.32 0.36 1.93 16 23 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 24 H 0.03 1.38 7.48 -2.39 -0.02 1.36 16 25 H 0.06 2.41 7.05 -2.39 -0.02 2.40 16 26 H 0.06 2.10 6.36 -2.39 -0.02 2.09 16 27 H 0.04 1.84 4.76 -2.39 -0.01 1.83 16 28 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 29 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.08 2.47 5.72 -2.39 -0.01 2.46 16 31 H 0.06 1.90 7.80 -2.38 -0.02 1.89 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.18 6.51 -2.39 -0.02 1.17 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.05 1.22 7.62 -2.39 -0.02 1.21 16 36 H 0.08 1.65 6.50 -2.39 -0.02 1.64 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.38 11.17 9.05 -74.05 -0.67 10.50 16 40 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 2.53 6.46 -2.38 -0.02 2.52 16 Total: -1.00 -63.68 299.18 1.11 -62.57 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.16 Total: 20.44 kcal Atomic # 6 Polarization: -31.13 SS G_CDS: 3.66 Total: -27.47 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -2.75 Total: -81.50 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -1.72 Total: -19.48 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.77 Total: 45.44 kcal Total: -63.68 1.11 -62.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.659 kcal (2) G-P(sol) polarization free energy of solvation -63.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds