Wall clock time and date at job start Sun Mar 29 2020 23:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46901 * 2 1 4 4 H 1.08999 * 109.47418 * 54.99825 * 3 2 1 5 5 C 1.50698 * 109.47177 * 175.00274 * 3 2 1 6 6 H 1.08000 * 120.00310 * 119.99890 * 5 3 2 7 7 C 1.37879 * 119.99909 * 299.99405 * 5 3 2 8 8 N 1.31520 * 119.99770 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00204 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47194 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46882 * 120.00403 * 9 7 5 12 12 H 1.48501 * 109.47304 * 239.99973 * 9 7 5 13 13 N 1.46909 * 109.46837 * 294.99627 * 3 2 1 14 14 C 1.46842 * 110.99983 * 299.21421 * 13 3 2 15 15 C 1.53037 * 109.52055 * 174.16006 * 14 13 3 16 16 C 1.53119 * 109.27925 * 59.17890 * 15 14 13 17 17 H 1.08997 * 109.52811 * 62.24598 * 16 15 14 18 18 C 1.53005 * 109.52489 * 182.44200 * 16 15 14 19 19 C 1.53125 * 109.16107 * 302.34557 * 16 15 14 20 20 C 1.52997 * 109.50477 * 177.59692 * 19 16 15 21 21 O 1.42908 * 109.53267 * 297.69671 * 19 16 15 22 22 C 1.46850 * 110.99744 * 174.99745 * 13 3 2 23 23 H 1.09003 * 109.47060 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47262 * 300.00132 * 1 2 3 25 25 H 1.08995 * 109.47452 * 60.00444 * 1 2 3 26 26 H 1.08994 * 109.47262 * 239.99868 * 2 1 3 27 27 H 1.09003 * 109.47327 * 119.99838 * 2 1 3 28 28 H 0.97003 * 119.99949 * 180.02562 * 8 7 5 29 29 H 1.09005 * 109.46287 * 294.17087 * 14 13 3 30 30 H 1.08998 * 109.46573 * 54.14086 * 14 13 3 31 31 H 1.09000 * 109.50560 * 179.11675 * 15 14 13 32 32 H 1.08999 * 109.50598 * 299.23466 * 15 14 13 33 33 H 1.09001 * 109.47045 * 179.67960 * 18 16 15 34 34 H 1.08999 * 109.46506 * 299.68090 * 18 16 15 35 35 H 1.08992 * 109.46792 * 59.67761 * 18 16 15 36 36 H 1.09002 * 109.47153 * 300.19409 * 20 19 16 37 37 H 1.09001 * 109.46832 * 180.19600 * 20 19 16 38 38 H 1.09004 * 109.47261 * 60.19581 * 20 19 16 39 39 H 0.96692 * 113.99946 * 179.90270 * 21 19 16 40 40 H 1.09006 * 109.45846 * 65.83073 * 22 13 3 41 41 H 1.08998 * 109.46551 * 305.86259 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8786 1.2279 8 7 3.4062 0.3369 2.1729 9 14 6.0050 0.8803 1.3811 10 1 6.5988 1.5454 0.1936 11 1 6.3999 1.6159 2.6091 12 1 6.4962 -0.5188 1.4628 13 7 1.6513 2.0992 -1.2554 14 6 2.2354 1.4097 -2.4127 15 6 1.6947 2.0290 -3.7035 16 6 2.0524 3.5175 -3.7385 17 1 3.1364 3.6316 -3.7451 18 6 1.4620 4.1558 -4.9975 19 6 1.4734 4.2029 -2.4977 20 6 1.8770 5.6787 -2.4942 21 8 0.0483 4.0980 -2.5151 22 6 2.0205 3.5205 -1.2419 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8293 -0.0609 2.9499 29 1 3.3203 1.5126 -2.3873 30 1 1.9701 0.3531 -2.3780 31 1 2.1404 1.5274 -4.5624 32 1 0.6112 1.9143 -3.7362 33 1 1.7124 5.2164 -5.0187 34 1 1.8748 3.6672 -5.8802 35 1 0.3785 4.0382 -4.9905 36 1 2.9641 5.7580 -2.4823 37 1 1.4674 6.1652 -1.6089 38 1 1.4870 6.1642 -3.3888 39 1 -0.3857 4.5104 -1.7559 40 1 3.1064 3.6135 -1.2220 41 1 1.5990 3.9969 -0.3568 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:22 Heat of formation + Delta-G solvation = -63.604705 kcal Electronic energy + Delta-G solvation = -19244.484507 eV Core-core repulsion = 16544.619574 eV Total energy + Delta-G solvation = -2699.864933 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.37803 -36.27054 -34.03464 -32.35636 -31.12706 -30.75988 -27.95734 -26.49102 -25.25260 -22.98193 -21.79633 -21.41396 -19.28524 -18.81828 -16.47928 -15.57754 -15.32136 -14.77245 -14.27226 -14.25671 -13.56211 -13.49108 -12.90108 -12.84104 -12.64527 -12.10685 -11.89593 -11.74799 -11.58904 -11.45583 -11.19186 -11.14843 -10.88162 -10.84722 -10.59352 -10.27368 -10.13650 -9.92007 -9.76308 -9.62106 -9.54229 -9.08408 -8.87742 -8.34930 -7.01444 -5.97187 -4.11589 3.24418 3.33335 3.36188 4.39032 4.62891 5.00524 5.11822 5.16110 5.26655 5.40454 5.54838 5.73213 5.80010 5.99060 6.00370 6.03618 6.09015 6.22669 6.29185 6.35296 6.38274 6.51684 6.54930 6.58966 6.62906 6.68990 6.72415 6.82339 7.03971 7.17214 7.24118 7.39181 7.64226 7.79036 8.03161 8.16339 8.20000 8.38702 8.53244 9.00010 9.56003 11.00698 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025077 B = 0.008330 C = 0.007347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.314346 B = 3360.660951 C = 3810.377448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.213 3.787 4 H 0.036 0.964 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.522 5.522 14 C 0.060 3.940 15 C -0.108 4.108 16 C -0.075 4.075 17 H 0.070 0.930 18 C -0.141 4.141 19 C 0.138 3.862 20 C -0.178 4.178 21 O -0.546 6.546 22 C 0.043 3.957 23 H 0.024 0.976 24 H 0.037 0.963 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.091 0.909 28 H 0.260 0.740 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.368 0.632 40 H 0.040 0.960 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.592 6.426 -8.883 11.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C 0.107 3.893 4 H 0.054 0.946 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.245 5.245 14 C -0.068 4.068 15 C -0.146 4.146 16 C -0.093 4.093 17 H 0.088 0.912 18 C -0.198 4.198 19 C 0.097 3.903 20 C -0.236 4.236 21 O -0.351 6.351 22 C -0.086 4.086 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.214 0.786 40 H 0.058 0.942 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.963 5.974 -9.301 11.743 hybrid contribution 2.040 0.332 0.918 2.261 sum -1.923 6.306 -8.383 10.665 Atomic orbital electron populations 1.21702 0.98777 0.98334 1.00693 1.21621 0.92345 0.99187 1.01879 1.19280 0.92855 0.91196 0.85960 0.94596 1.21794 0.93027 1.37886 1.05322 0.92678 1.24916 0.97704 0.95109 0.95749 1.69890 1.34616 1.38428 1.09429 0.86654 0.86390 0.77732 0.77906 1.20010 1.21064 1.20991 1.62313 1.57995 1.00283 1.03933 1.21924 0.96744 0.98347 0.89785 1.21629 1.01974 0.93753 0.97248 1.21095 0.98835 0.96054 0.93362 0.91178 1.21780 1.01772 0.99628 0.96611 1.21223 0.81407 0.92400 0.95303 1.22507 1.02004 0.97195 1.01873 1.86480 1.18126 1.81815 1.48649 1.22479 0.98747 0.91441 0.95983 0.95735 0.94337 0.93123 0.94831 0.89080 0.92989 0.95037 0.91177 0.93037 0.91017 0.93261 0.93519 0.91931 0.92028 0.92606 0.92018 0.78607 0.94167 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.80 37.16 0.36 -2.49 16 2 C -0.11 -2.67 5.06 -26.73 -0.14 -2.80 16 3 C 0.21 5.22 1.75 -68.86 -0.12 5.10 16 4 H 0.04 0.98 8.08 -51.93 -0.42 0.56 16 5 C -0.54 -14.36 7.19 -34.44 -0.25 -14.60 16 6 H 0.06 1.48 5.84 -52.49 -0.31 1.18 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.82 11.29 55.43 0.63 -24.19 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.52 -10.91 3.98 -228.07 -0.91 -11.82 16 14 C 0.06 1.20 4.80 -3.84 -0.02 1.18 16 15 C -0.11 -1.80 5.22 -26.65 -0.14 -1.94 16 16 C -0.07 -1.14 2.12 -90.49 -0.19 -1.34 16 17 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 18 C -0.14 -1.84 8.74 37.16 0.32 -1.51 16 19 C 0.14 2.13 0.68 -90.54 -0.06 2.07 16 20 C -0.18 -2.31 8.52 37.16 0.32 -1.99 16 21 O -0.55 -8.48 11.55 -35.23 -0.41 -8.89 16 22 C 0.04 0.81 4.06 -3.83 -0.02 0.80 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.05 1.03 7.75 -51.93 -0.40 0.62 16 26 H 0.03 0.79 6.05 -51.93 -0.31 0.47 16 27 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.03 0.68 6.63 -51.93 -0.34 0.34 16 30 H 0.07 1.44 5.93 -51.93 -0.31 1.14 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.26 7.80 -51.93 -0.41 0.86 16 33 H 0.05 0.58 6.51 -51.93 -0.34 0.25 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.87 7.63 -51.93 -0.40 0.47 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.74 6.51 -51.93 -0.34 0.40 16 39 H 0.37 4.71 9.05 45.56 0.41 5.12 16 40 H 0.04 0.84 6.96 -51.93 -0.36 0.48 16 41 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 LS Contribution 304.99 15.07 4.60 4.60 Total: -1.00 -27.83 304.99 -7.48 -35.30 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.34 Total: 4.73 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -0.02 Total: -15.79 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.28 Total: -36.01 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.41 Total: -8.89 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.83 -7.48 -35.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.302 kcal (2) G-P(sol) polarization free energy of solvation -27.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds