Wall clock time and date at job start Sun Mar 29 2020 23:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47355 * 2 1 4 4 H 1.08998 * 109.46963 * 175.94880 * 3 2 1 5 5 C 1.50701 * 109.47166 * 55.94848 * 3 2 1 6 6 H 1.08002 * 119.99769 * 244.27889 * 5 3 2 7 7 C 1.37875 * 119.99900 * 64.27041 * 5 3 2 8 8 N 1.31516 * 120.00304 * 8.14154 * 7 5 3 9 9 Si 1.86797 * 120.00122 * 188.13255 * 7 5 3 10 10 H 1.48501 * 109.47072 * 90.00523 * 9 7 5 11 11 H 1.48499 * 109.47114 * 330.01047 * 9 7 5 12 12 H 1.48496 * 109.47443 * 210.00341 * 9 7 5 13 13 N 1.46897 * 109.46784 * 295.95143 * 3 2 1 14 14 C 1.46908 * 110.99926 * 277.10988 * 13 3 2 15 15 C 1.52997 * 109.47360 * 185.35865 * 14 13 3 16 16 H 1.09001 * 109.46775 * 54.99944 * 15 14 13 17 17 C 1.52995 * 109.47304 * 174.99887 * 15 14 13 18 18 C 1.52997 * 109.47304 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47311 * 300.00413 * 18 17 15 20 20 H 1.09001 * 109.46910 * 299.99561 * 19 18 17 21 21 O 1.42899 * 109.47223 * 179.97438 * 19 18 17 22 22 C 1.52995 * 109.47274 * 59.99569 * 19 18 17 23 23 C 1.52997 * 109.47304 * 300.00436 * 22 19 18 24 24 H 1.08999 * 109.46917 * 305.24964 * 1 2 3 25 25 H 1.08991 * 109.46889 * 65.24906 * 1 2 3 26 26 H 1.08994 * 109.47184 * 185.25145 * 1 2 3 27 27 H 1.08998 * 109.47230 * 239.99831 * 2 1 3 28 28 H 1.09003 * 109.46934 * 119.99827 * 2 1 3 29 29 H 0.97000 * 119.99532 * 3.76208 * 8 7 5 30 30 H 1.00900 * 111.00544 * 41.06039 * 13 3 2 31 31 H 1.08999 * 109.46762 * 305.36190 * 14 13 3 32 32 H 1.09005 * 109.46997 * 65.35747 * 14 13 3 33 33 H 1.08997 * 109.47435 * 300.00233 * 17 15 14 34 34 H 1.09001 * 109.47158 * 60.00292 * 17 15 14 35 35 H 1.09001 * 109.46775 * 60.00057 * 18 17 15 36 36 H 1.08996 * 109.47264 * 180.02562 * 18 17 15 37 37 H 0.96700 * 113.99728 * 179.97438 * 21 19 18 38 38 H 1.09001 * 109.47158 * 60.00144 * 22 19 18 39 39 H 1.08997 * 109.47435 * 180.02562 * 22 19 18 40 40 H 1.08996 * 109.47222 * 299.99900 * 23 22 19 41 41 H 1.09002 * 109.47496 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1277 1.4433 0.0726 5 6 1.4575 2.1813 1.1772 6 1 0.7895 3.0144 1.0150 7 6 1.7771 1.7937 2.4612 8 7 2.7096 0.8883 2.6619 9 14 0.8858 2.5546 3.9157 10 1 -0.3176 1.7459 4.2370 11 1 0.4744 3.9401 3.5745 12 1 1.7917 2.5826 5.0920 13 7 1.6319 2.1061 -1.2453 14 6 2.5626 1.7933 -2.3381 15 6 2.1836 2.6044 -3.5788 16 1 2.1521 3.6639 -3.3245 17 6 3.2243 2.3740 -4.6763 18 6 2.8456 3.1856 -5.9168 19 6 1.4699 2.7406 -6.4170 20 1 1.5011 1.6812 -6.6715 21 8 1.1159 3.4990 -7.5752 22 6 0.4291 2.9709 -5.3195 23 6 0.8078 2.1594 -4.0790 24 1 -0.3633 0.5931 0.8392 25 1 -0.3633 0.4302 -0.9332 26 1 -0.3633 -1.0233 0.0941 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2104 0.5332 1.9109 30 1 0.6860 1.8582 -1.4940 31 1 3.5781 2.0473 -2.0342 32 1 2.5078 0.7294 -2.5687 33 1 4.2043 2.6915 -4.3201 34 1 3.2559 1.3145 -4.9305 35 1 2.8144 4.2450 -5.6622 36 1 3.5868 3.0211 -6.6988 37 1 0.2535 3.2691 -7.9474 38 1 0.3979 4.0303 -5.0649 39 1 -0.5509 2.6535 -5.6756 40 1 0.8390 1.1000 -4.3335 41 1 0.0666 2.3238 -3.2969 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:57 Heat of formation + Delta-G solvation = -87.529873 kcal Electronic energy + Delta-G solvation = -18148.538598 eV Core-core repulsion = 15447.636192 eV Total energy + Delta-G solvation = -2700.902406 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.24586 -37.01649 -35.60667 -32.72677 -30.99784 -30.83841 -29.10662 -25.88203 -23.83784 -23.55591 -22.67100 -20.89528 -19.74749 -19.45011 -17.35559 -16.75590 -15.59989 -15.18552 -14.55452 -14.22363 -13.76242 -13.67862 -13.54015 -13.28731 -12.95696 -12.64285 -12.22749 -12.18734 -11.83895 -11.78352 -11.21729 -11.12664 -10.99870 -10.75646 -10.54913 -10.45605 -10.19647 -10.09710 -10.03832 -9.97002 -9.82499 -9.75909 -8.59826 -8.22456 -7.26893 -6.28212 -3.96137 3.46512 3.50043 3.65950 4.04583 4.55340 4.65518 4.66859 4.91726 5.08101 5.15830 5.36153 5.39358 5.41412 5.46067 5.52933 5.58781 5.86938 5.92182 5.96474 6.03026 6.10560 6.12070 6.12909 6.19849 6.21257 6.29734 6.35418 6.51726 6.63519 6.69053 7.01766 7.08757 7.27289 7.32341 7.48495 7.97468 8.30724 8.50729 8.68772 8.95847 9.71664 11.07971 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041567 B = 0.004755 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.454194 B = 5887.495021 C = 5911.682107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.151 4.151 3 C 0.203 3.797 4 H 0.024 0.976 5 C -0.570 4.570 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.677 5.677 14 C 0.063 3.937 15 C -0.085 4.085 16 H 0.079 0.921 17 C -0.111 4.111 18 C -0.109 4.109 19 C 0.104 3.896 20 H 0.052 0.948 21 O -0.572 6.572 22 C -0.148 4.148 23 C -0.112 4.112 24 H 0.073 0.927 25 H 0.031 0.969 26 H 0.027 0.973 27 H 0.019 0.981 28 H 0.067 0.933 29 H 0.268 0.732 30 H 0.327 0.673 31 H 0.063 0.937 32 H 0.015 0.985 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.375 0.625 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.240 1.037 -15.918 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.191 4.191 3 C 0.095 3.905 4 H 0.041 0.959 5 C -0.609 4.609 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.896 3.104 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.308 5.308 14 C -0.067 4.067 15 C -0.104 4.104 16 H 0.097 0.903 17 C -0.149 4.149 18 C -0.147 4.147 19 C 0.045 3.955 20 H 0.070 0.930 21 O -0.377 6.377 22 C -0.186 4.186 23 C -0.150 4.150 24 H 0.091 0.909 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.146 0.854 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.221 0.779 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.465 1.867 -13.973 14.311 hybrid contribution -0.667 -1.296 -1.950 2.435 sum -3.132 0.571 -15.923 16.238 Atomic orbital electron populations 1.21587 0.96864 0.99098 1.01266 1.22207 0.96070 1.01447 0.99361 1.19327 0.95307 0.88340 0.87550 0.95851 1.21861 1.30728 1.17286 0.91024 0.92685 1.25697 0.96666 0.96067 1.00117 1.70773 1.20886 1.28417 1.35258 0.83578 0.75727 0.75565 0.75579 1.21618 1.21494 1.21287 1.60762 1.04474 1.62652 1.02927 1.21937 0.97716 0.95733 0.91319 1.21213 0.93824 1.01391 0.94004 0.90261 1.21528 0.99236 0.99849 0.94302 1.21460 0.94867 1.00998 0.97381 1.21871 0.95027 0.94036 0.84522 0.93027 1.86504 1.40884 1.65260 1.45094 1.22240 0.98257 1.01746 0.96368 1.21529 0.97781 0.99009 0.96660 0.90855 0.94992 0.95390 0.96236 0.91473 0.92077 0.85416 0.91865 0.96670 0.91238 0.92096 0.91205 0.91661 0.77857 0.91054 0.92160 0.92457 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.38 37.16 0.35 -2.37 16 2 C -0.15 -3.45 5.47 -26.73 -0.15 -3.60 16 3 C 0.20 4.99 1.96 -68.86 -0.13 4.85 16 4 H 0.02 0.64 7.10 -51.93 -0.37 0.27 16 5 C -0.57 -15.60 7.23 -34.44 -0.25 -15.85 16 6 H 0.05 1.55 7.83 -52.49 -0.41 1.14 16 7 C 0.02 0.50 5.24 -17.82 -0.09 0.41 16 8 N -0.92 -27.05 12.92 55.43 0.72 -26.33 16 9 Si 1.07 25.12 29.91 -169.99 -5.08 20.04 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 13 N -0.68 -14.15 6.17 -107.95 -0.67 -14.81 16 14 C 0.06 1.10 4.95 -3.82 -0.02 1.08 16 15 C -0.09 -1.20 2.40 -90.62 -0.22 -1.42 16 16 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 17 C -0.11 -1.33 5.20 -26.74 -0.14 -1.47 16 18 C -0.11 -1.24 5.57 -26.73 -0.15 -1.39 16 19 C 0.10 1.12 3.47 -26.73 -0.09 1.03 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 21 O -0.57 -6.12 13.32 -35.23 -0.47 -6.59 16 22 C -0.15 -1.62 5.54 -26.74 -0.15 -1.77 16 23 C -0.11 -1.43 4.97 -26.73 -0.13 -1.56 16 24 H 0.07 1.68 6.90 -51.93 -0.36 1.32 16 25 H 0.03 0.59 6.63 -51.93 -0.34 0.25 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.40 7.32 -51.93 -0.38 0.02 16 28 H 0.07 1.70 6.37 -51.93 -0.33 1.37 16 29 H 0.27 7.90 6.09 -40.82 -0.25 7.65 16 30 H 0.33 6.48 5.09 -39.29 -0.20 6.28 16 31 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 32 H 0.02 0.26 7.37 -51.93 -0.38 -0.12 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.37 2.42 9.08 45.56 0.41 2.84 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.99 6.81 -51.93 -0.35 0.63 16 LS Contribution 310.96 15.07 4.69 4.69 Total: -1.00 -29.79 310.96 -8.39 -38.18 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.40 Total: 6.89 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -1.17 Total: -22.06 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.05 Total: -41.14 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.47 Total: -6.59 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.04 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.79 -8.39 -38.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.352 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds