Wall clock time and date at job start Sun Mar 29 2020 23:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47355 * 2 1 4 4 H 1.08998 * 109.46963 * 175.94880 * 3 2 1 5 5 C 1.50701 * 109.47166 * 55.94848 * 3 2 1 6 6 H 1.08002 * 119.99769 * 244.27889 * 5 3 2 7 7 C 1.37875 * 119.99900 * 64.27041 * 5 3 2 8 8 N 1.31516 * 120.00304 * 8.14154 * 7 5 3 9 9 Si 1.86797 * 120.00122 * 188.13255 * 7 5 3 10 10 H 1.48501 * 109.47072 * 90.00523 * 9 7 5 11 11 H 1.48499 * 109.47114 * 330.01047 * 9 7 5 12 12 H 1.48496 * 109.47443 * 210.00341 * 9 7 5 13 13 N 1.46897 * 109.46784 * 295.95143 * 3 2 1 14 14 C 1.46908 * 110.99926 * 277.10988 * 13 3 2 15 15 C 1.52997 * 109.47360 * 185.35865 * 14 13 3 16 16 H 1.09001 * 109.46775 * 54.99944 * 15 14 13 17 17 C 1.52995 * 109.47304 * 174.99887 * 15 14 13 18 18 C 1.52997 * 109.47304 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47311 * 300.00413 * 18 17 15 20 20 H 1.09001 * 109.46910 * 299.99561 * 19 18 17 21 21 O 1.42899 * 109.47223 * 179.97438 * 19 18 17 22 22 C 1.52995 * 109.47274 * 59.99569 * 19 18 17 23 23 C 1.52997 * 109.47304 * 300.00436 * 22 19 18 24 24 H 1.08999 * 109.46917 * 305.24964 * 1 2 3 25 25 H 1.08991 * 109.46889 * 65.24906 * 1 2 3 26 26 H 1.08994 * 109.47184 * 185.25145 * 1 2 3 27 27 H 1.08998 * 109.47230 * 239.99831 * 2 1 3 28 28 H 1.09003 * 109.46934 * 119.99827 * 2 1 3 29 29 H 0.97000 * 119.99532 * 3.76208 * 8 7 5 30 30 H 1.00900 * 111.00544 * 41.06039 * 13 3 2 31 31 H 1.08999 * 109.46762 * 305.36190 * 14 13 3 32 32 H 1.09005 * 109.46997 * 65.35747 * 14 13 3 33 33 H 1.08997 * 109.47435 * 300.00233 * 17 15 14 34 34 H 1.09001 * 109.47158 * 60.00292 * 17 15 14 35 35 H 1.09001 * 109.46775 * 60.00057 * 18 17 15 36 36 H 1.08996 * 109.47264 * 180.02562 * 18 17 15 37 37 H 0.96700 * 113.99728 * 179.97438 * 21 19 18 38 38 H 1.09001 * 109.47158 * 60.00144 * 22 19 18 39 39 H 1.08997 * 109.47435 * 180.02562 * 22 19 18 40 40 H 1.08996 * 109.47222 * 299.99900 * 23 22 19 41 41 H 1.09002 * 109.47496 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1277 1.4433 0.0726 5 6 1.4575 2.1813 1.1772 6 1 0.7895 3.0144 1.0150 7 6 1.7771 1.7937 2.4612 8 7 2.7096 0.8883 2.6619 9 14 0.8858 2.5546 3.9157 10 1 -0.3176 1.7459 4.2370 11 1 0.4744 3.9401 3.5745 12 1 1.7917 2.5826 5.0920 13 7 1.6319 2.1061 -1.2453 14 6 2.5626 1.7933 -2.3381 15 6 2.1836 2.6044 -3.5788 16 1 2.1521 3.6639 -3.3245 17 6 3.2243 2.3740 -4.6763 18 6 2.8456 3.1856 -5.9168 19 6 1.4699 2.7406 -6.4170 20 1 1.5011 1.6812 -6.6715 21 8 1.1159 3.4990 -7.5752 22 6 0.4291 2.9709 -5.3195 23 6 0.8078 2.1594 -4.0790 24 1 -0.3633 0.5931 0.8392 25 1 -0.3633 0.4302 -0.9332 26 1 -0.3633 -1.0233 0.0941 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2104 0.5332 1.9109 30 1 0.6860 1.8582 -1.4940 31 1 3.5781 2.0473 -2.0342 32 1 2.5078 0.7294 -2.5687 33 1 4.2043 2.6915 -4.3201 34 1 3.2559 1.3145 -4.9305 35 1 2.8144 4.2450 -5.6622 36 1 3.5868 3.0211 -6.6988 37 1 0.2535 3.2691 -7.9474 38 1 0.3979 4.0303 -5.0649 39 1 -0.5509 2.6535 -5.6756 40 1 0.8390 1.1000 -4.3335 41 1 0.0666 2.3238 -3.2969 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:56 Heat of formation + Delta-G solvation = -107.933561 kcal Electronic energy + Delta-G solvation = -18149.423368 eV Core-core repulsion = 15447.636192 eV Total energy + Delta-G solvation = -2701.787176 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.27460 -38.56298 -36.79583 -34.46816 -32.70321 -31.77698 -30.46582 -27.70224 -25.58187 -25.12126 -23.65932 -22.06247 -21.32311 -20.74729 -18.76587 -18.16541 -16.84511 -16.55532 -15.89262 -15.52917 -15.45415 -15.24036 -14.86509 -14.63448 -14.32418 -14.06734 -13.70366 -13.30377 -13.14974 -13.01164 -12.93312 -12.61364 -12.27627 -12.13108 -12.04611 -11.94591 -11.87770 -11.70462 -11.54562 -11.39344 -11.02986 -10.70184 -10.59042 -10.34375 -9.00161 -8.50689 -6.19351 1.55610 1.63333 1.80881 2.60784 3.25691 3.26670 3.50403 3.73296 3.79147 4.01874 4.17039 4.28524 4.33501 4.34444 4.39994 4.44275 4.52041 4.53122 4.55101 4.67985 4.84842 4.91058 4.94529 5.04322 5.08159 5.13954 5.18635 5.19206 5.21981 5.26460 5.39813 5.43369 5.53583 5.56082 6.00867 6.22317 6.56888 6.81296 6.82080 6.90410 7.56134 8.85227 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041567 B = 0.004755 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.454194 B = 5887.495021 C = 5911.682107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 C 0.206 3.794 4 H -0.011 1.011 5 C -0.575 4.575 6 H 0.044 0.956 7 C -0.028 4.028 8 N -0.939 5.939 9 Si 1.110 2.890 10 H -0.274 1.274 11 H -0.276 1.276 12 H -0.289 1.289 13 N -0.683 5.683 14 C 0.066 3.934 15 C -0.077 4.077 16 H 0.062 0.938 17 C -0.105 4.105 18 C -0.109 4.109 19 C 0.107 3.893 20 H 0.064 0.936 21 O -0.586 6.586 22 C -0.141 4.141 23 C -0.109 4.109 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.256 0.744 30 H 0.335 0.665 31 H 0.046 0.954 32 H 0.021 0.979 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.393 0.607 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.616 0.872 -17.457 18.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.183 4.183 3 C 0.097 3.903 4 H 0.007 0.993 5 C -0.614 4.614 6 H 0.062 0.938 7 C -0.226 4.226 8 N -0.578 5.578 9 Si 0.933 3.067 10 H -0.199 1.199 11 H -0.201 1.201 12 H -0.215 1.215 13 N -0.315 5.315 14 C -0.064 4.064 15 C -0.096 4.096 16 H 0.081 0.919 17 C -0.143 4.143 18 C -0.146 4.146 19 C 0.048 3.952 20 H 0.082 0.918 21 O -0.394 6.394 22 C -0.179 4.179 23 C -0.147 4.147 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.155 0.845 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.243 0.757 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.862 1.702 -15.550 16.113 hybrid contribution -0.211 -1.224 -1.546 1.984 sum -4.074 0.477 -17.096 17.581 Atomic orbital electron populations 1.21496 0.94917 1.00271 1.01412 1.22057 0.97704 0.99812 0.98702 1.19116 0.93039 0.89557 0.88605 0.99333 1.22106 1.30065 1.16959 0.92267 0.93780 1.26968 0.96662 0.95914 1.03048 1.70886 1.22177 1.29962 1.34762 0.83011 0.75215 0.75727 0.72730 1.19944 1.20082 1.21498 1.60636 1.05531 1.62511 1.02792 1.21972 0.96159 0.96693 0.91568 1.21110 0.95716 0.99659 0.93134 0.91908 1.21457 0.98342 1.00663 0.93811 1.21434 0.95909 1.00185 0.97120 1.21808 0.94235 0.94620 0.84498 0.91782 1.86466 1.42489 1.65538 1.44926 1.22176 0.99489 1.00670 0.95581 1.21484 0.96176 0.99870 0.97147 0.93268 0.92716 0.93192 0.94442 0.94482 0.93354 0.84517 0.93555 0.96055 0.91416 0.91049 0.92250 0.90844 0.75698 0.92227 0.90106 0.91501 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.38 71.98 0.68 -4.27 16 2 C -0.14 -6.51 5.47 30.60 0.17 -6.34 16 3 C 0.21 10.29 1.96 44.17 0.09 10.37 16 4 H -0.01 -0.63 7.10 -2.39 -0.02 -0.65 16 5 C -0.58 -31.91 7.23 25.60 0.19 -31.73 16 6 H 0.04 2.50 7.83 -2.91 -0.02 2.47 16 7 C -0.03 -1.59 5.24 84.65 0.44 -1.14 16 8 N -0.94 -56.69 12.92 21.45 0.28 -56.41 16 9 Si 1.11 50.57 29.91 68.60 2.05 52.63 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 13 N -0.68 -28.50 6.17 -495.43 -3.06 -31.56 16 14 C 0.07 2.28 4.95 86.30 0.43 2.71 16 15 C -0.08 -2.10 2.40 -10.80 -0.03 -2.13 16 16 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 17 C -0.10 -2.34 5.20 30.59 0.16 -2.18 16 18 C -0.11 -2.27 5.57 30.59 0.17 -2.09 16 19 C 0.11 2.01 3.47 30.59 0.11 2.11 16 20 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 21 O -0.59 -10.94 13.32 -148.98 -1.98 -12.92 16 22 C -0.14 -2.74 5.54 30.59 0.17 -2.57 16 23 C -0.11 -2.55 4.97 30.59 0.15 -2.40 16 24 H 0.05 2.20 6.90 -2.39 -0.02 2.18 16 25 H 0.05 1.91 6.63 -2.39 -0.02 1.89 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.54 7.32 -2.39 -0.02 1.52 16 28 H 0.04 1.90 6.37 -2.39 -0.02 1.88 16 29 H 0.26 15.67 6.09 -92.71 -0.56 15.11 16 30 H 0.33 12.95 5.09 -89.69 -0.46 12.49 16 31 H 0.05 1.74 7.93 -2.39 -0.02 1.72 16 32 H 0.02 0.72 7.37 -2.38 -0.02 0.70 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.39 3.88 9.08 -74.06 -0.67 3.20 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.53 6.81 -2.39 -0.02 1.51 16 Total: -1.00 -64.28 310.96 0.08 -64.20 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.08 Total: 23.74 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 2.72 Total: -39.67 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -2.78 Total: -87.97 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -1.98 Total: -12.92 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 2.05 Total: 52.63 kcal Total: -64.28 0.08 -64.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.732 kcal (2) G-P(sol) polarization free energy of solvation -64.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds