Wall clock time and date at job start Sun Mar 29 2020 23:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47341 * 2 1 4 4 H 1.08998 * 109.47261 * 179.88857 * 3 2 1 5 5 C 1.50700 * 109.46868 * 299.89002 * 3 2 1 6 6 H 1.07996 * 120.00359 * 119.99845 * 5 3 2 7 7 C 1.37884 * 119.99975 * 299.99752 * 5 3 2 8 8 N 1.31519 * 119.99613 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00346 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47176 * 89.99547 * 9 7 5 11 11 H 1.48499 * 109.47137 * 210.00091 * 9 7 5 12 12 H 1.48503 * 109.46907 * 329.99591 * 9 7 5 13 13 N 1.46901 * 109.47233 * 59.88294 * 3 2 1 14 14 C 1.46897 * 110.99794 * 85.94212 * 13 3 2 15 15 C 1.52998 * 109.47413 * 175.56490 * 14 13 3 16 16 H 1.09005 * 109.46911 * 305.00282 * 15 14 13 17 17 C 1.53004 * 109.47368 * 64.99900 * 15 14 13 18 18 C 1.52999 * 109.47306 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.46861 * 299.99989 * 18 17 15 20 20 H 1.09001 * 109.46818 * 299.99964 * 19 18 17 21 21 O 1.42900 * 109.47055 * 180.02562 * 19 18 17 22 22 C 1.53004 * 109.47152 * 59.99917 * 19 18 17 23 23 C 1.52996 * 109.47462 * 185.00125 * 15 14 13 24 24 H 1.09000 * 109.47426 * 55.59945 * 1 2 3 25 25 H 1.09003 * 109.46851 * 175.59094 * 1 2 3 26 26 H 1.08998 * 109.47922 * 295.59238 * 1 2 3 27 27 H 1.09001 * 109.47679 * 239.99438 * 2 1 3 28 28 H 1.09005 * 109.46961 * 119.99989 * 2 1 3 29 29 H 0.96994 * 119.99896 * 180.02562 * 8 7 5 30 30 H 1.00897 * 111.00228 * 209.89454 * 13 3 2 31 31 H 1.08999 * 109.47411 * 55.56452 * 14 13 3 32 32 H 1.09003 * 109.47344 * 295.56537 * 14 13 3 33 33 H 1.08992 * 109.46975 * 60.00026 * 17 15 14 34 34 H 1.09004 * 109.46734 * 300.00054 * 17 15 14 35 35 H 1.09002 * 109.47241 * 180.02562 * 18 17 15 36 36 H 1.09001 * 109.47375 * 59.99612 * 18 17 15 37 37 H 0.96700 * 114.00246 * 59.99282 * 21 19 18 38 38 H 1.08994 * 109.46975 * 179.97438 * 22 19 18 39 39 H 1.08996 * 109.46547 * 60.00100 * 22 19 18 40 40 H 1.09000 * 109.47239 * 60.00118 * 23 15 14 41 41 H 1.09005 * 109.47185 * 299.99988 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0020 5 6 1.5399 2.1521 -1.2318 6 1 0.9188 3.0302 -1.1345 7 6 1.8753 1.6802 -2.4833 8 7 2.6320 0.6111 -2.6017 9 14 1.2560 2.5600 -4.0102 10 1 2.2353 3.6011 -4.4130 11 1 1.0928 1.5803 -5.1141 12 1 -0.0526 3.1981 -3.7173 13 7 1.5480 2.1358 1.1980 14 6 2.4416 1.9090 2.3417 15 6 1.9592 2.7329 3.5372 16 1 1.8807 3.7810 3.2481 17 6 0.5883 2.2241 3.9875 18 6 0.1056 3.0485 5.1826 19 6 1.1041 2.9107 6.3337 20 1 1.1825 1.8628 6.6231 21 8 0.6530 3.6802 7.4502 22 6 2.4750 3.4195 5.8834 23 6 2.9577 2.5947 4.6881 24 1 -0.3634 0.5806 -0.8479 25 1 -0.3633 -1.0247 -0.0790 26 1 -0.3635 0.4439 0.9268 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 2.8683 0.2793 -3.4820 30 1 1.4295 3.1222 1.0219 31 1 3.4547 2.2116 2.0770 32 1 2.4353 0.8508 2.6035 33 1 0.6667 1.1761 4.2765 34 1 -0.1231 2.3227 3.1675 35 1 -0.8708 2.6857 5.5036 36 1 0.0271 4.0965 4.8932 37 1 -0.2121 3.4120 7.7890 38 1 3.1861 3.3218 6.7036 39 1 2.3964 4.4674 5.5941 40 1 3.9343 2.9573 4.3674 41 1 3.0362 1.5466 4.9772 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:59 Heat of formation + Delta-G solvation = -85.947474 kcal Electronic energy + Delta-G solvation = -18101.720757 eV Core-core repulsion = 15400.886969 eV Total energy + Delta-G solvation = -2700.833788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.12256 -36.67668 -35.32541 -32.60738 -30.93798 -30.71662 -29.13621 -26.20493 -23.81952 -23.08159 -22.56135 -20.86786 -19.71259 -18.92391 -17.27683 -16.39175 -15.50610 -14.78784 -14.55521 -14.33756 -14.08402 -13.73947 -13.17114 -13.09306 -12.70645 -12.28814 -12.08931 -12.07796 -11.77495 -11.59057 -11.12722 -11.04472 -10.92462 -10.78108 -10.44733 -10.40655 -10.25792 -10.11280 -9.96972 -9.67820 -9.58252 -9.31626 -8.74860 -8.44819 -7.17355 -6.00668 -4.06035 3.29379 3.36558 3.39877 4.10864 4.40846 4.74057 4.75450 5.03528 5.16662 5.25015 5.30853 5.43872 5.45902 5.57067 5.63763 5.77323 5.96052 6.01982 6.07511 6.15562 6.20258 6.23876 6.34953 6.47914 6.56919 6.66312 6.70351 6.74544 6.88329 7.25132 7.35921 7.52073 7.54385 7.76251 7.81303 7.87686 8.29802 8.43137 8.71428 9.04236 9.58779 11.05228 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041473 B = 0.004745 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.983832 B = 5899.129181 C = 5932.305117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.215 3.785 4 H -0.001 1.001 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.684 5.684 14 C 0.065 3.935 15 C -0.086 4.086 16 H 0.066 0.934 17 C -0.102 4.102 18 C -0.151 4.151 19 C 0.103 3.897 20 H 0.052 0.948 21 O -0.574 6.574 22 C -0.109 4.109 23 C -0.112 4.112 24 H 0.055 0.945 25 H 0.012 0.988 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.008 0.992 29 H 0.260 0.740 30 H 0.328 0.672 31 H 0.017 0.983 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.375 0.625 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.526 2.685 14.660 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.108 3.892 4 H 0.016 0.984 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.314 5.314 14 C -0.065 4.065 15 C -0.105 4.105 16 H 0.084 0.916 17 C -0.139 4.139 18 C -0.189 4.189 19 C 0.045 3.955 20 H 0.070 0.930 21 O -0.379 6.379 22 C -0.146 4.146 23 C -0.150 4.150 24 H 0.074 0.926 25 H 0.031 0.969 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.145 0.855 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.221 0.779 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.296 2.346 14.577 14.942 hybrid contribution -0.045 0.612 -1.094 1.254 sum -2.341 2.958 13.483 14.000 Atomic orbital electron populations 1.21440 0.97568 0.97304 1.01282 1.21416 0.94964 0.98346 0.99304 1.19126 0.92846 0.91465 0.85790 0.98378 1.21203 1.31523 1.11882 0.90409 0.92370 1.24891 0.95090 0.94992 0.98906 1.69888 1.36750 1.22766 1.23406 0.86589 0.79232 0.79344 0.82796 1.20853 1.21262 1.19879 1.60699 1.48939 1.15601 1.06204 1.21941 0.94009 0.99152 0.91361 1.21221 0.94751 0.99981 0.94524 0.91561 1.21411 0.97195 0.98473 0.96834 1.22300 0.98287 1.01640 0.96655 1.21893 0.94460 0.93902 0.85277 0.92983 1.86492 1.40016 1.62090 1.49321 1.21459 0.94782 1.00550 0.97855 1.21545 0.98926 1.00059 0.94446 0.92552 0.96908 0.93982 0.89663 0.97302 0.93005 0.85496 0.96453 0.92077 0.92411 0.89982 0.92241 0.91424 0.77872 0.91775 0.91426 0.91519 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.52 37.15 0.35 -2.30 16 2 C -0.10 -2.47 5.59 -26.73 -0.15 -2.62 16 3 C 0.22 5.31 2.30 -68.86 -0.16 5.15 16 4 H 0.00 -0.04 7.71 -51.93 -0.40 -0.44 16 5 C -0.51 -13.63 7.26 -34.44 -0.25 -13.88 16 6 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 7 C 0.06 1.71 5.30 -17.81 -0.09 1.62 16 8 N -0.89 -25.15 11.32 55.43 0.63 -24.52 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.68 -13.93 5.10 -107.95 -0.55 -14.48 16 14 C 0.07 1.14 4.92 -3.83 -0.02 1.12 16 15 C -0.09 -1.19 2.29 -90.62 -0.21 -1.40 16 16 H 0.07 0.95 8.12 -51.93 -0.42 0.52 16 17 C -0.10 -1.35 5.09 -26.73 -0.14 -1.48 16 18 C -0.15 -1.70 5.55 -26.73 -0.15 -1.85 16 19 C 0.10 1.14 3.47 -26.73 -0.09 1.05 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 O -0.57 -6.29 13.32 -35.23 -0.47 -6.76 16 22 C -0.11 -1.25 5.58 -26.71 -0.15 -1.40 16 23 C -0.11 -1.34 5.21 -26.71 -0.14 -1.48 16 24 H 0.06 1.36 7.07 -51.93 -0.37 0.99 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.04 0.88 7.74 -51.93 -0.40 0.48 16 27 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 28 H 0.01 0.19 7.60 -51.93 -0.39 -0.20 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.33 6.64 8.13 -39.29 -0.32 6.32 16 31 H 0.02 0.32 7.94 -51.93 -0.41 -0.09 16 32 H 0.06 1.10 7.61 -51.93 -0.40 0.70 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.23 7.75 -51.93 -0.40 0.83 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.37 2.54 9.08 45.56 0.41 2.95 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 316.71 15.07 4.77 4.77 Total: -1.00 -28.32 316.71 -8.59 -36.91 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.76 Total: 5.48 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -1.19 Total: -17.47 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.08 Total: -39.00 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.47 Total: -6.76 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.32 -8.59 -36.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.040 kcal (2) G-P(sol) polarization free energy of solvation -28.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds