Wall clock time and date at job start Sun Mar 29 2020 23:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47341 * 2 1 4 4 H 1.08998 * 109.47261 * 179.88857 * 3 2 1 5 5 C 1.50700 * 109.46868 * 299.89002 * 3 2 1 6 6 H 1.07996 * 120.00359 * 119.99845 * 5 3 2 7 7 C 1.37884 * 119.99975 * 299.99752 * 5 3 2 8 8 N 1.31519 * 119.99613 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00346 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47176 * 89.99547 * 9 7 5 11 11 H 1.48499 * 109.47137 * 210.00091 * 9 7 5 12 12 H 1.48503 * 109.46907 * 329.99591 * 9 7 5 13 13 N 1.46901 * 109.47233 * 59.88294 * 3 2 1 14 14 C 1.46897 * 110.99794 * 85.94212 * 13 3 2 15 15 C 1.52998 * 109.47413 * 175.56490 * 14 13 3 16 16 H 1.09005 * 109.46911 * 305.00282 * 15 14 13 17 17 C 1.53004 * 109.47368 * 64.99900 * 15 14 13 18 18 C 1.52999 * 109.47306 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.46861 * 299.99989 * 18 17 15 20 20 H 1.09001 * 109.46818 * 299.99964 * 19 18 17 21 21 O 1.42900 * 109.47055 * 180.02562 * 19 18 17 22 22 C 1.53004 * 109.47152 * 59.99917 * 19 18 17 23 23 C 1.52996 * 109.47462 * 185.00125 * 15 14 13 24 24 H 1.09000 * 109.47426 * 55.59945 * 1 2 3 25 25 H 1.09003 * 109.46851 * 175.59094 * 1 2 3 26 26 H 1.08998 * 109.47922 * 295.59238 * 1 2 3 27 27 H 1.09001 * 109.47679 * 239.99438 * 2 1 3 28 28 H 1.09005 * 109.46961 * 119.99989 * 2 1 3 29 29 H 0.96994 * 119.99896 * 180.02562 * 8 7 5 30 30 H 1.00897 * 111.00228 * 209.89454 * 13 3 2 31 31 H 1.08999 * 109.47411 * 55.56452 * 14 13 3 32 32 H 1.09003 * 109.47344 * 295.56537 * 14 13 3 33 33 H 1.08992 * 109.46975 * 60.00026 * 17 15 14 34 34 H 1.09004 * 109.46734 * 300.00054 * 17 15 14 35 35 H 1.09002 * 109.47241 * 180.02562 * 18 17 15 36 36 H 1.09001 * 109.47375 * 59.99612 * 18 17 15 37 37 H 0.96700 * 114.00246 * 59.99282 * 21 19 18 38 38 H 1.08994 * 109.46975 * 179.97438 * 22 19 18 39 39 H 1.08996 * 109.46547 * 60.00100 * 22 19 18 40 40 H 1.09000 * 109.47239 * 60.00118 * 23 15 14 41 41 H 1.09005 * 109.47185 * 299.99988 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0020 5 6 1.5399 2.1521 -1.2318 6 1 0.9188 3.0302 -1.1345 7 6 1.8753 1.6802 -2.4833 8 7 2.6320 0.6111 -2.6017 9 14 1.2560 2.5600 -4.0102 10 1 2.2353 3.6011 -4.4130 11 1 1.0928 1.5803 -5.1141 12 1 -0.0526 3.1981 -3.7173 13 7 1.5480 2.1358 1.1980 14 6 2.4416 1.9090 2.3417 15 6 1.9592 2.7329 3.5372 16 1 1.8807 3.7810 3.2481 17 6 0.5883 2.2241 3.9875 18 6 0.1056 3.0485 5.1826 19 6 1.1041 2.9107 6.3337 20 1 1.1825 1.8628 6.6231 21 8 0.6530 3.6802 7.4502 22 6 2.4750 3.4195 5.8834 23 6 2.9577 2.5947 4.6881 24 1 -0.3634 0.5806 -0.8479 25 1 -0.3633 -1.0247 -0.0790 26 1 -0.3635 0.4439 0.9268 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 2.8683 0.2793 -3.4820 30 1 1.4295 3.1222 1.0219 31 1 3.4547 2.2116 2.0770 32 1 2.4353 0.8508 2.6035 33 1 0.6667 1.1761 4.2765 34 1 -0.1231 2.3227 3.1675 35 1 -0.8708 2.6857 5.5036 36 1 0.0271 4.0965 4.8932 37 1 -0.2121 3.4120 7.7890 38 1 3.1861 3.3218 6.7036 39 1 2.3964 4.4674 5.5941 40 1 3.9343 2.9573 4.3674 41 1 3.0362 1.5466 4.9772 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:58 Heat of formation + Delta-G solvation = -104.513331 kcal Electronic energy + Delta-G solvation = -18102.525833 eV Core-core repulsion = 15400.886969 eV Total energy + Delta-G solvation = -2701.638864 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14088 -38.15240 -36.62679 -34.34462 -32.70709 -31.67984 -30.53659 -28.04668 -25.41965 -24.76651 -23.57456 -22.03352 -20.86957 -20.69860 -18.32576 -18.10696 -16.96862 -16.40459 -15.84461 -15.60055 -15.38408 -15.25833 -14.77871 -14.37520 -14.08286 -13.92200 -13.38107 -13.27965 -13.04665 -12.99617 -12.82535 -12.65304 -12.39519 -12.25058 -12.02991 -11.83560 -11.74573 -11.46105 -11.39454 -11.11432 -10.98716 -10.76982 -10.58490 -10.51071 -8.93450 -8.08653 -6.20854 1.41814 1.43646 1.53265 2.43232 3.20009 3.31253 3.60582 3.81325 3.95362 4.01207 4.28290 4.37101 4.45437 4.56704 4.60098 4.60794 4.66187 4.78648 4.82296 4.93301 4.97957 4.99833 5.13537 5.14397 5.23514 5.26266 5.31995 5.35332 5.43851 5.56772 5.58855 5.61703 5.73060 5.85170 5.92404 6.30363 6.53412 6.84420 6.93100 7.06920 7.48162 8.96422 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041473 B = 0.004745 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.983832 B = 5899.129181 C = 5932.305117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.221 3.779 4 H -0.040 1.040 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.954 3.046 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.267 1.267 13 N -0.675 5.675 14 C 0.068 3.932 15 C -0.077 4.077 16 H 0.063 0.937 17 C -0.097 4.097 18 C -0.143 4.143 19 C 0.106 3.894 20 H 0.061 0.939 21 O -0.586 6.586 22 C -0.107 4.107 23 C -0.106 4.106 24 H 0.035 0.965 25 H 0.031 0.969 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.018 0.982 29 H 0.260 0.740 30 H 0.329 0.671 31 H 0.005 0.995 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.393 0.607 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.552 3.144 15.863 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.137 4.137 3 C 0.112 3.888 4 H -0.023 1.023 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.183 4.183 8 N -0.557 5.557 9 Si 0.780 3.220 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.305 5.305 14 C -0.061 4.061 15 C -0.096 4.096 16 H 0.081 0.919 17 C -0.135 4.135 18 C -0.181 4.181 19 C 0.047 3.953 20 H 0.079 0.921 21 O -0.395 6.395 22 C -0.145 4.145 23 C -0.144 4.144 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.146 0.854 31 H 0.024 0.976 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.242 0.758 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.340 2.813 15.805 16.397 hybrid contribution 0.296 0.462 -1.417 1.520 sum -3.044 3.275 14.388 15.066 Atomic orbital electron populations 1.21295 0.95842 0.98249 1.00932 1.21295 0.96374 0.97712 0.98277 1.18927 0.90481 0.92261 0.87117 1.02277 1.21472 1.31309 1.11919 0.91390 0.92449 1.25635 0.95277 0.95638 1.01750 1.70026 1.37771 1.24010 1.23928 0.85614 0.78871 0.78234 0.79262 1.20439 1.21124 1.19194 1.60626 1.49215 1.15321 1.05351 1.21977 0.93010 0.99575 0.91569 1.21129 0.95862 0.98931 0.93672 0.91901 1.21331 0.96061 0.98960 0.97138 1.22216 0.99242 1.00768 0.95838 1.21826 0.93869 0.94338 0.85222 0.92065 1.86454 1.41551 1.62375 1.49103 1.21429 0.95528 0.99942 0.97610 1.21476 0.98311 1.00689 0.93900 0.94615 0.95024 0.92720 0.92631 0.96331 0.93083 0.85395 0.97648 0.92544 0.92255 0.91823 0.90555 0.92135 0.75759 0.91004 0.92081 0.91428 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.64 9.52 71.98 0.69 -3.96 16 2 C -0.10 -4.78 5.59 30.59 0.17 -4.61 16 3 C 0.22 11.08 2.30 44.17 0.10 11.19 16 4 H -0.04 -2.30 7.71 -2.39 -0.02 -2.32 16 5 C -0.52 -28.10 7.26 25.60 0.19 -27.91 16 6 H 0.06 3.03 7.60 -2.91 -0.02 3.01 16 7 C 0.02 0.88 5.30 84.66 0.45 1.33 16 8 N -0.92 -52.81 11.32 21.45 0.24 -52.57 16 9 Si 0.95 43.34 29.54 68.60 2.03 45.37 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 N -0.68 -27.56 5.10 -495.46 -2.53 -30.08 16 14 C 0.07 2.37 4.92 86.30 0.42 2.80 16 15 C -0.08 -2.06 2.29 -10.79 -0.02 -2.09 16 16 H 0.06 1.74 8.12 -2.38 -0.02 1.72 16 17 C -0.10 -2.42 5.09 30.60 0.16 -2.26 16 18 C -0.14 -2.89 5.55 30.60 0.17 -2.72 16 19 C 0.11 2.06 3.47 30.60 0.11 2.17 16 20 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 21 O -0.59 -11.25 13.32 -148.98 -1.98 -13.24 16 22 C -0.11 -2.24 5.58 30.61 0.17 -2.07 16 23 C -0.11 -2.37 5.21 30.61 0.16 -2.21 16 24 H 0.03 1.69 7.07 -2.39 -0.02 1.67 16 25 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 2.23 7.74 -2.39 -0.02 2.21 16 27 H 0.06 3.06 6.07 -2.39 -0.01 3.05 16 28 H 0.02 0.83 7.60 -2.38 -0.02 0.81 16 29 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.33 13.33 8.13 -89.70 -0.73 12.60 16 31 H 0.01 0.20 7.94 -2.39 -0.02 0.18 16 32 H 0.06 2.01 7.61 -2.39 -0.02 1.99 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.83 7.75 -2.38 -0.02 1.81 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 37 H 0.39 4.16 9.08 -74.06 -0.67 3.49 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -60.13 316.71 0.10 -60.03 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -0.41 Total: 20.84 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 2.75 Total: -30.35 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -2.29 Total: -82.66 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -1.98 Total: -13.24 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -60.13 0.10 -60.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.482 kcal (2) G-P(sol) polarization free energy of solvation -60.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds