Wall clock time and date at job start Sun Mar 29 2020 23:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47083 * 2 1 4 4 H 1.09000 * 109.47109 * 303.73062 * 3 2 1 5 5 C 1.50699 * 109.46882 * 183.73621 * 3 2 1 6 6 H 1.07996 * 119.99810 * 239.99782 * 5 3 2 7 7 C 1.37877 * 120.00163 * 59.99413 * 5 3 2 8 8 N 1.31509 * 120.00093 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99751 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47062 * 90.00309 * 9 7 5 11 11 H 1.48502 * 109.46759 * 210.00362 * 9 7 5 12 12 H 1.48502 * 109.47329 * 330.00176 * 9 7 5 13 13 N 1.46893 * 109.47107 * 63.73179 * 3 2 1 14 14 C 1.46904 * 111.00024 * 220.68782 * 13 3 2 15 15 C 1.52993 * 109.47356 * 304.97380 * 14 13 3 16 16 C 1.52997 * 109.47312 * 184.96983 * 14 13 3 17 17 C 1.53002 * 109.47224 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47074 * 60.00276 * 17 16 14 19 19 H 1.08994 * 109.47015 * 59.99486 * 18 17 16 20 20 O 1.42897 * 109.47173 * 180.02562 * 18 17 16 21 21 C 1.53007 * 109.46834 * 299.99950 * 18 17 16 22 22 C 1.52998 * 109.46906 * 60.00185 * 21 18 17 23 23 H 1.09003 * 109.46860 * 63.08966 * 1 2 3 24 24 H 1.08991 * 109.47069 * 183.09502 * 1 2 3 25 25 H 1.09002 * 109.46851 * 303.09570 * 1 2 3 26 26 H 1.08997 * 109.46809 * 239.99533 * 2 1 3 27 27 H 1.09002 * 109.47116 * 119.99841 * 2 1 3 28 28 H 0.97005 * 119.99962 * 179.97438 * 8 7 5 29 29 H 1.00910 * 111.00121 * 96.73882 * 13 3 2 30 30 H 1.09001 * 109.47435 * 65.33979 * 15 14 13 31 31 H 1.09002 * 109.47305 * 305.34097 * 15 14 13 32 32 H 1.08996 * 109.47369 * 185.33713 * 15 14 13 33 33 H 1.08998 * 109.47419 * 300.00715 * 16 14 13 34 34 H 1.09002 * 109.47331 * 60.00401 * 16 14 13 35 35 H 1.09002 * 109.47330 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.46955 * 300.00195 * 17 16 14 37 37 H 0.96703 * 113.99892 * 180.02562 * 20 18 17 38 38 H 1.09000 * 109.46785 * 179.97438 * 21 18 17 39 39 H 1.08997 * 109.46837 * 300.00107 * 21 18 17 40 40 H 1.09002 * 109.46987 * 179.97438 * 22 21 18 41 41 H 1.08997 * 109.47436 * 60.00289 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6231 1.9753 -0.8547 5 6 3.5442 1.4435 -0.0926 6 1 4.1332 1.8938 0.6926 7 6 4.1684 0.8694 -1.1797 8 7 3.4511 0.3214 -2.1361 9 14 6.0329 0.8700 -1.2940 10 1 6.5685 -0.3573 -0.6523 11 1 6.4412 0.9008 -2.7215 12 1 6.5711 2.0671 -0.5993 13 7 1.6254 2.1085 1.2419 14 6 1.1923 3.4877 0.9804 15 6 2.3054 4.2421 0.2508 16 6 0.8871 4.1865 2.3068 17 6 0.4354 5.6228 2.0344 18 6 -0.8239 5.6053 1.1656 19 1 -1.6166 5.0675 1.6856 20 8 -1.2454 6.9467 0.9107 21 6 -0.5186 4.9064 -0.1608 22 6 -0.0670 3.4702 0.1117 23 1 -0.3633 0.4651 -0.9164 24 1 -0.3633 -1.0261 0.0555 25 1 -0.3633 0.5612 0.8610 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8902 -0.0821 -2.9012 29 1 2.3644 2.0856 1.9287 30 1 2.4576 3.8016 -0.7346 31 1 3.2287 4.1732 0.8260 32 1 2.0231 5.2891 0.1408 33 1 0.0941 3.6490 2.8267 34 1 1.7841 4.1987 2.9260 35 1 0.2184 6.1208 2.9794 36 1 1.2282 6.1605 1.5144 37 1 -2.0407 7.0119 0.3646 38 1 -1.4159 4.8935 -0.7795 39 1 0.2741 5.4441 -0.6808 40 1 0.1500 2.9721 -0.8333 41 1 -0.8598 2.9324 0.6316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:53 Heat of formation + Delta-G solvation = -74.194836 kcal Electronic energy + Delta-G solvation = -19014.541680 eV Core-core repulsion = 16314.217525 eV Total energy + Delta-G solvation = -2700.324155 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.49579 -36.76918 -34.64209 -32.05735 -31.07516 -30.52479 -28.11155 -26.56447 -25.25572 -22.91398 -22.47298 -21.05171 -19.27955 -17.93302 -17.11374 -16.62176 -15.51571 -14.72772 -14.46833 -14.17277 -13.86414 -13.43502 -13.09002 -12.84781 -12.36474 -12.24984 -11.92312 -11.70670 -11.50169 -11.31534 -11.10440 -11.02600 -10.92445 -10.66428 -10.57126 -10.42185 -10.31003 -10.07877 -9.73918 -9.58530 -9.42092 -9.32858 -8.83964 -8.34064 -7.19753 -5.99004 -4.08931 3.27229 3.34633 3.36992 4.27702 4.40447 4.93852 4.97416 5.15304 5.28616 5.45850 5.48082 5.66080 5.70351 5.77133 5.82015 6.10875 6.13362 6.21628 6.27002 6.35913 6.41064 6.48511 6.52031 6.58169 6.69244 6.69600 6.76052 6.90661 7.11690 7.19821 7.24748 7.53174 7.63414 7.69926 7.80669 8.13290 8.19796 8.39984 8.72885 9.04755 9.57303 11.02369 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028875 B = 0.007195 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.467919 B = 3890.442816 C = 4310.789177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.214 3.786 4 H 0.035 0.965 5 C -0.533 4.533 6 H 0.053 0.947 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.682 5.682 14 C 0.120 3.880 15 C -0.169 4.169 16 C -0.104 4.104 17 C -0.110 4.110 18 C 0.106 3.894 19 H 0.052 0.948 20 O -0.574 6.574 21 C -0.151 4.151 22 C -0.100 4.100 23 H 0.033 0.967 24 H 0.022 0.978 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.329 0.671 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.373 0.627 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.733 7.522 4.755 11.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.106 3.894 4 H 0.053 0.947 5 C -0.572 4.572 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.311 5.311 14 C 0.028 3.972 15 C -0.228 4.228 16 C -0.142 4.142 17 C -0.148 4.148 18 C 0.048 3.952 19 H 0.070 0.930 20 O -0.379 6.379 21 C -0.189 4.189 22 C -0.137 4.137 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.146 0.854 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.220 0.780 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.823 7.280 4.925 11.767 hybrid contribution 1.534 0.159 -0.744 1.712 sum -6.289 7.440 4.181 10.601 Atomic orbital electron populations 1.21737 0.99309 0.98335 1.00136 1.21514 0.91845 0.99631 1.01458 1.19165 0.92721 0.90870 0.86606 0.94689 1.21808 0.92415 1.37280 1.05732 0.92879 1.24907 0.97745 0.95187 0.95777 1.69877 1.34775 1.38177 1.09676 0.86698 0.86409 0.78352 0.77133 1.20726 1.21319 1.20126 1.60972 1.43284 1.12933 1.13909 1.20708 0.93842 0.89652 0.93005 1.22578 0.98584 0.98921 1.02720 1.21527 1.01165 0.93824 0.97686 1.21507 0.96498 0.97734 0.99088 1.21870 0.96287 0.81820 0.95269 0.93044 1.86492 1.48870 1.27949 1.74601 1.22308 1.01502 0.97788 0.97323 1.21534 0.97236 0.94292 1.00683 0.94780 0.95848 0.93147 0.89485 0.95162 0.92994 0.85393 0.91101 0.93203 0.94005 0.91609 0.91879 0.91998 0.91014 0.78042 0.92412 0.91004 0.90964 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.83 37.16 0.37 -2.42 16 2 C -0.11 -2.50 5.44 -26.73 -0.15 -2.64 16 3 C 0.21 5.03 1.19 -68.87 -0.08 4.94 16 4 H 0.04 0.90 4.98 -51.93 -0.26 0.65 16 5 C -0.53 -13.84 7.34 -34.44 -0.25 -14.09 16 6 H 0.05 1.38 7.50 -52.49 -0.39 0.99 16 7 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 8 N -0.89 -24.65 11.30 55.43 0.63 -24.03 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 N -0.68 -13.58 5.31 -94.25 -0.50 -14.08 16 14 C 0.12 2.07 0.70 -131.60 -0.09 1.98 16 15 C -0.17 -3.14 6.79 37.15 0.25 -2.89 16 16 C -0.10 -1.53 4.94 -26.73 -0.13 -1.66 16 17 C -0.11 -1.51 5.30 -26.73 -0.14 -1.65 16 18 C 0.11 1.38 3.47 -26.73 -0.09 1.29 16 19 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 20 O -0.57 -7.22 13.32 -35.23 -0.47 -7.69 16 21 C -0.15 -2.10 5.27 -26.73 -0.14 -2.24 16 22 C -0.10 -1.64 4.68 -26.73 -0.13 -1.77 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.98 7.63 -51.93 -0.40 0.58 16 26 H 0.09 2.31 5.98 -51.93 -0.31 2.00 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.33 6.66 7.99 -39.29 -0.31 6.34 16 30 H 0.07 1.53 6.44 -51.93 -0.33 1.20 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.69 4.83 -51.93 -0.25 0.44 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.04 6.31 -51.93 -0.33 0.72 16 37 H 0.37 3.10 9.08 45.56 0.41 3.51 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.07 6.55 -51.93 -0.34 0.73 16 40 H 0.07 1.37 6.33 -51.93 -0.33 1.04 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 304.40 15.07 4.59 4.59 Total: -1.00 -27.47 304.40 -7.66 -35.13 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -6.20 Total: 9.61 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -0.68 Total: -19.48 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.13 Total: -38.11 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.47 Total: -7.69 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.47 -7.66 -35.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.064 kcal (2) G-P(sol) polarization free energy of solvation -27.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds